Wall clock time and date at job start Tue Mar 31 2020 18:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35945 * 119.25248 * 2 1 4 4 C 1.38343 * 119.27692 * 179.97438 * 3 2 1 5 5 C 1.46566 * 120.97913 * 180.02562 * 4 3 2 6 6 C 1.35301 * 120.00289 * 185.57856 * 5 4 3 7 7 C 1.41627 * 120.00069 * 174.91423 * 6 5 4 8 8 O 1.21758 * 120.00310 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99933 * 179.97438 * 7 6 5 10 10 C 1.47578 * 134.49413 * 179.97438 * 9 7 6 11 11 C 1.53941 * 86.12068 * 155.35664 * 10 9 7 12 12 O 1.42900 * 113.74594 * 269.15935 * 11 10 9 13 13 C 1.50700 * 113.74262 * 137.95193 * 11 10 9 14 14 H 1.07997 * 119.99910 * 1.92613 * 13 11 10 15 15 C 1.37877 * 119.99863 * 181.92872 * 13 11 10 16 16 N 1.31517 * 120.00307 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99835 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46972 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47102 * 299.99735 * 17 15 13 20 20 H 1.48499 * 109.46885 * 60.00061 * 17 15 13 21 21 C 1.47818 * 134.45615 * 359.86442 * 9 7 6 22 22 C 1.47338 * 118.04643 * 0.27474 * 4 3 2 23 23 O 1.21670 * 120.74304 * 179.70085 * 22 4 3 24 24 N 1.34969 * 118.51383 * 359.46563 * 22 4 3 25 25 C 1.46504 * 119.76072 * 180.26443 * 24 22 4 26 26 C 1.34226 * 119.24401 * 180.02562 * 2 1 3 27 27 O 1.21559 * 118.91013 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.46333 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47452 * 119.99559 * 1 2 3 30 30 H 1.08996 * 109.47444 * 240.00218 * 1 2 3 31 31 H 1.08006 * 120.36359 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.99542 * 5.57918 * 5 4 3 33 33 H 1.08005 * 119.99670 * 354.91082 * 6 5 4 34 34 H 1.09002 * 113.76603 * 41.05695 * 10 9 7 35 35 H 1.08992 * 113.87282 * 269.67525 * 10 9 7 36 36 H 0.96696 * 114.00295 * 178.07660 * 12 11 10 37 37 H 0.96996 * 120.00359 * 179.97438 * 16 15 13 38 38 H 1.08999 * 113.76915 * 90.38077 * 21 9 7 39 39 H 1.09005 * 113.83382 * 318.91567 * 21 9 7 40 40 H 1.09000 * 109.47181 * 270.27617 * 25 24 22 41 41 H 1.09000 * 109.47056 * 30.28259 * 25 24 22 42 42 H 1.09008 * 109.47058 * 150.27608 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1861 0.0000 4 6 3.5128 1.1867 0.0005 5 6 4.2667 2.4436 0.0011 6 6 5.6148 2.4240 -0.1123 7 6 6.3341 3.6392 -0.2201 8 8 5.7393 4.7016 -0.2113 9 7 7.6770 3.6197 -0.3326 10 6 8.7194 4.6565 -0.4612 11 6 9.6809 3.6164 0.1419 12 8 9.7711 3.6744 1.5668 13 6 11.0287 3.5743 -0.5309 14 1 11.2523 4.2592 -1.3354 15 6 11.9763 2.6612 -0.1194 16 7 11.7042 1.8275 0.8607 17 14 13.6468 2.6085 -0.9538 18 1 14.4779 1.5472 -0.3309 19 1 13.4693 2.3148 -2.3986 20 1 14.3212 3.9219 -0.7948 21 6 8.6970 2.5506 -0.3744 22 6 4.2061 -0.1134 -0.0051 23 8 5.4215 -0.1701 -0.0104 24 7 3.4629 -1.2400 0.0005 25 6 4.1240 -2.5474 0.0009 26 6 2.1208 -1.1712 -0.0005 27 8 1.4794 -2.2038 -0.0015 28 1 -0.3632 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8899 31 1 1.5831 2.1178 0.0004 32 1 3.7460 3.3855 0.0921 33 1 6.1423 1.4816 -0.1204 34 1 8.5558 5.5253 0.1765 35 1 8.9512 4.9233 -1.4922 36 1 10.3515 3.0036 1.9518 37 1 12.3707 1.1849 1.1499 38 1 8.9212 2.1964 -1.3806 39 1 8.5156 1.7408 0.3324 40 1 4.2883 -2.8718 -1.0266 41 1 5.0820 -2.4699 0.5151 42 1 3.4936 -3.2732 0.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255318022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:16 Heat of formation + Delta-G solvation = -71.850784 kcal Electronic energy + Delta-G solvation = -28595.537153 eV Core-core repulsion = 24350.134640 eV Total energy + Delta-G solvation = -4245.402512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.39844 -41.22229 -40.35818 -39.16094 -38.54021 -36.57720 -35.78821 -35.06836 -34.14804 -31.86227 -30.28003 -29.36156 -27.92983 -27.26576 -26.99214 -25.20847 -24.72828 -22.83252 -21.47122 -20.60970 -19.56997 -19.04179 -18.55790 -18.50865 -18.34193 -17.62175 -17.21973 -16.73476 -16.64357 -16.29018 -16.10314 -15.97579 -15.88469 -15.06449 -14.86054 -14.72600 -14.61522 -14.32355 -13.99397 -13.93776 -13.74705 -13.51109 -13.40694 -13.36480 -13.21207 -12.81845 -12.74417 -12.67140 -12.24902 -12.21303 -12.16075 -11.49907 -11.25202 -11.11048 -10.97514 -10.81479 -10.62443 -10.22775 -9.58415 -8.96338 -8.25015 -6.43095 -0.58247 0.47891 0.77253 0.93128 1.48181 1.49191 1.57460 1.73502 2.10620 2.18615 2.41305 2.60707 2.97002 3.06967 3.44689 3.69912 3.86982 4.01833 4.09211 4.20203 4.21213 4.25356 4.31235 4.44932 4.49603 4.52894 4.56410 4.63701 4.66325 4.80811 4.85659 4.91180 4.93194 5.00712 5.12231 5.22830 5.42657 5.63086 5.72567 5.93277 5.99800 6.32034 6.62544 6.69090 6.89226 7.23974 7.31253 7.43379 8.80932 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018144 B = 0.002680 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.844072 B =10445.142697 C =11646.199285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.519 5.519 3 C 0.254 3.746 4 C -0.284 4.284 5 C 0.039 3.961 6 C -0.265 4.265 7 C 0.559 3.441 8 O -0.606 6.606 9 N -0.634 5.634 10 C 0.113 3.887 11 C 0.220 3.780 12 O -0.585 6.585 13 C -0.557 4.557 14 H 0.075 0.925 15 C 0.029 3.971 16 N -0.918 5.918 17 Si 0.972 3.028 18 H -0.283 1.283 19 H -0.268 1.268 20 H -0.272 1.272 21 C 0.096 3.904 22 C 0.538 3.462 23 O -0.531 6.531 24 N -0.558 5.558 25 C 0.075 3.925 26 C 0.685 3.315 27 O -0.557 6.557 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.252 0.748 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.386 0.614 37 H 0.275 0.725 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.779 -6.506 -2.516 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.233 5.233 3 C 0.127 3.873 4 C -0.293 4.293 5 C 0.018 3.982 6 C -0.286 4.286 7 C 0.356 3.644 8 O -0.493 6.493 9 N -0.366 5.366 10 C -0.009 4.009 11 C 0.179 3.821 12 O -0.397 6.397 13 C -0.595 4.595 14 H 0.093 0.907 15 C -0.171 4.171 16 N -0.558 5.558 17 Si 0.797 3.203 18 H -0.208 1.208 19 H -0.193 1.193 20 H -0.197 1.197 21 C -0.027 4.027 22 C 0.335 3.665 23 O -0.407 6.407 24 N -0.301 5.301 25 C -0.065 4.065 26 C 0.389 3.611 27 O -0.432 6.432 28 H 0.165 0.835 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.268 0.732 32 H 0.180 0.820 33 H 0.158 0.842 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.240 0.760 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.409 -6.419 -2.460 26.323 hybrid contribution 1.870 -0.935 -0.127 2.094 sum -23.539 -7.354 -2.588 24.797 Atomic orbital electron populations 1.22624 0.71096 1.08076 1.05102 1.44785 1.11531 1.03457 1.63561 1.23810 0.90796 0.91273 0.81464 1.20269 0.93198 0.91275 1.24553 1.21731 0.92305 0.95378 0.88748 1.22559 0.97223 0.98166 1.10658 1.17291 0.80401 0.90319 0.76417 1.90671 1.68389 1.34236 1.56011 1.50178 1.04299 1.11985 1.70108 1.23396 0.83637 0.93109 1.00754 1.20133 0.91988 0.90264 0.79704 1.86035 1.71759 1.60597 1.21282 1.21707 0.98763 1.19589 1.19408 0.90734 1.25831 1.02429 0.93735 0.95145 1.69489 1.36759 1.21024 1.28536 0.85390 0.78331 0.77840 0.78755 1.20797 1.19281 1.19665 1.24053 0.85004 0.92974 1.00636 1.19190 0.87195 0.84686 0.75461 1.90739 1.14504 1.86132 1.49330 1.46452 1.06347 1.10892 1.66416 1.22034 0.98885 0.80918 1.04696 1.15948 0.81452 0.84968 0.78770 1.91004 1.65194 1.32280 1.54743 0.83529 0.89673 0.89645 0.73202 0.81988 0.84209 0.91921 0.87931 0.75971 0.91525 0.89710 0.92680 0.89937 0.89454 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.06 9.94 127.77 1.27 1.33 16 2 N -0.52 -4.92 2.98 -678.79 -2.02 -6.95 16 3 C 0.25 1.96 10.20 84.08 0.86 2.82 16 4 C -0.28 -5.74 6.04 -18.68 -0.11 -5.85 16 5 C 0.04 1.05 9.42 23.77 0.22 1.27 16 6 C -0.27 -10.09 8.93 22.43 0.20 -9.88 16 7 C 0.56 25.21 7.79 85.08 0.66 25.88 16 8 O -0.61 -28.78 16.84 -4.53 -0.08 -28.86 16 9 N -0.63 -30.10 3.61 -850.19 -3.07 -33.17 16 10 C 0.11 5.36 8.23 86.48 0.71 6.07 16 11 C 0.22 11.41 1.40 -10.87 -0.02 11.39 16 12 O -0.59 -32.55 13.49 -148.98 -2.01 -34.56 16 13 C -0.56 -29.25 8.61 25.60 0.22 -29.03 16 14 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 15 C 0.03 1.50 5.40 84.65 0.46 1.96 16 16 N -0.92 -48.95 11.20 21.45 0.24 -48.71 16 17 Si 0.97 40.99 29.54 68.60 2.03 43.01 16 18 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 C 0.10 4.71 7.77 86.45 0.67 5.38 16 22 C 0.54 14.64 7.60 86.61 0.66 15.30 16 23 O -0.53 -19.20 13.23 -4.25 -0.06 -19.26 16 24 N -0.56 -12.54 2.96 -800.50 -2.37 -14.91 16 25 C 0.08 1.50 10.11 127.77 1.29 2.80 16 26 C 0.69 12.71 8.09 179.35 1.45 14.16 16 27 O -0.56 -12.45 15.63 -3.90 -0.06 -12.51 16 28 H 0.15 -1.23 7.72 -2.39 -0.02 -1.25 16 29 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.25 -1.18 7.84 -2.91 -0.02 -1.21 16 32 H 0.16 3.52 7.46 -2.91 -0.02 3.50 16 33 H 0.14 5.91 4.54 -3.20 -0.01 5.89 16 34 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.10 4.38 8.09 -2.39 -0.02 4.36 16 36 H 0.39 21.69 6.60 -74.06 -0.49 21.20 16 37 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.08 3.98 8.09 -2.39 -0.02 3.96 16 39 H 0.05 2.81 8.14 -2.38 -0.02 2.79 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.90 7.44 -2.39 -0.02 1.89 16 42 H 0.10 1.78 7.35 -2.38 -0.02 1.76 16 Total: -1.00 -81.44 362.27 1.74 -79.70 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.59 Total: 32.64 kcal Atomic # 6 Polarization: 35.03 SS G_CDS: 8.55 Total: 43.58 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -7.22 Total: -103.74 kcal Atomic # 8 Polarization: -92.98 SS G_CDS: -2.20 Total: -95.19 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -81.44 1.74 -79.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255318022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.849 kcal (2) G-P(sol) polarization free energy of solvation -81.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds