Wall clock time and date at job start Tue Mar 31 2020 18:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65604 * 119.99871 * 2 1 4 4 O 1.42091 * 104.28144 * 181.07469 * 3 2 1 5 5 O 1.42107 * 104.27654 * 308.92953 * 3 2 1 6 6 C 1.81402 * 104.44928 * 64.99700 * 3 2 1 7 7 C 1.52996 * 109.46999 * 179.97438 * 6 3 2 8 8 C 1.50702 * 109.46836 * 180.02562 * 7 6 3 9 9 O 1.21277 * 119.99999 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99997 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99946 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46861 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.51241 * 304.90260 * 12 11 10 14 14 C 1.53298 * 109.51241 * 184.74658 * 12 11 10 15 15 N 1.47146 * 108.38733 * 187.77667 * 14 12 11 16 16 C 1.36938 * 120.98309 * 230.51697 * 15 14 12 17 17 H 1.08000 * 119.99779 * 26.23995 * 16 15 14 18 18 C 1.38813 * 119.99943 * 206.24218 * 16 15 14 19 19 N 1.31615 * 119.99865 * 16.91322 * 18 16 15 20 20 Si 1.86797 * 119.99676 * 196.91854 * 18 16 15 21 21 H 1.48500 * 109.47589 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46970 * 120.00008 * 20 18 16 23 23 H 1.48507 * 109.47201 * 239.99659 * 20 18 16 24 24 C 1.47154 * 118.03378 * 50.53284 * 15 14 12 25 25 C 1.53294 * 108.38771 * 309.46578 * 24 15 14 26 26 O 1.42961 * 109.22211 * 52.30388 * 25 24 15 27 27 H 1.08999 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47426 * 299.99572 * 1 2 3 29 29 H 1.08996 * 109.47357 * 60.00327 * 1 2 3 30 30 H 0.96993 * 120.00525 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47090 * 300.00396 * 6 3 2 32 32 H 1.09008 * 109.46419 * 60.00379 * 6 3 2 33 33 H 1.08994 * 109.47715 * 300.00248 * 7 6 3 34 34 H 1.09008 * 109.47033 * 60.00990 * 7 6 3 35 35 H 0.97007 * 120.00126 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47320 * 299.99938 * 11 10 8 37 37 H 1.09002 * 109.47001 * 60.00758 * 11 10 8 38 38 H 1.09001 * 109.68231 * 307.50291 * 14 12 11 39 39 H 1.08997 * 109.67806 * 68.04904 * 14 12 11 40 40 H 0.97006 * 119.99667 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.67752 * 189.74274 * 24 15 14 42 42 H 1.08998 * 109.71151 * 69.21115 * 24 15 14 43 43 H 1.08995 * 109.51625 * 292.38011 * 25 24 15 44 44 H 1.09003 * 109.51076 * 172.22286 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6605 1.0494 -0.0258 5 8 1.7187 2.1704 -1.0713 6 6 1.8762 2.1974 1.5920 7 6 2.5898 3.5453 1.7136 8 6 2.2440 4.1791 3.0365 9 8 1.5006 3.6086 3.8063 10 7 2.7611 5.3799 3.3641 11 6 2.4245 5.9962 4.6498 12 6 3.1372 7.3447 4.7710 13 1 4.2082 7.2049 4.6251 14 6 2.8816 7.9358 6.1622 15 7 3.4154 9.3067 6.1892 16 6 4.2505 9.7183 7.1934 17 1 4.8590 8.9974 7.7192 18 6 4.3150 11.0621 7.5354 19 7 3.3634 11.8856 7.1500 20 14 5.7524 11.7015 8.5425 21 1 6.6800 10.5826 8.8474 22 1 6.4725 12.7455 7.7700 23 1 5.2473 12.2848 9.8114 24 6 3.0249 10.2225 5.1056 25 6 3.2735 9.5201 3.7659 26 8 2.6332 8.2420 3.7785 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8399 -0.0004 31 1 0.7986 2.3497 1.6509 32 1 2.1957 1.5431 2.4032 33 1 3.6673 3.3927 1.6549 34 1 2.2706 4.1999 0.9024 35 1 3.3554 5.8364 2.7481 36 1 1.3469 6.1486 4.7087 37 1 2.7440 5.3419 5.4610 38 1 1.8102 7.9549 6.3617 39 1 3.3851 7.3307 6.9161 40 1 3.4087 12.8248 7.3887 41 1 3.6234 11.1319 5.1600 42 1 1.9681 10.4725 5.1985 43 1 4.3452 9.3889 3.6169 44 1 2.8639 10.1245 2.9565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268021071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:32 Heat of formation + Delta-G solvation = -129.733647 kcal Electronic energy + Delta-G solvation = -26776.553118 eV Core-core repulsion = 22664.084568 eV Total energy + Delta-G solvation = -4112.468550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.91093 -38.52515 -37.51232 -36.37364 -35.45853 -35.05385 -34.35414 -33.57279 -31.60450 -30.71400 -27.75480 -26.46325 -26.25476 -24.55256 -23.21490 -21.85293 -20.71678 -19.79696 -19.62736 -18.41138 -17.55980 -17.01983 -16.84590 -16.42525 -16.17358 -16.03564 -15.70515 -15.10025 -15.02283 -14.51549 -14.38243 -14.07363 -13.94054 -13.79070 -13.31549 -13.28996 -13.10050 -12.93215 -12.78945 -12.52393 -12.45030 -12.39579 -12.08397 -11.86381 -11.62545 -11.29353 -11.17771 -10.91836 -10.76542 -10.47044 -10.30071 -10.15870 -10.04815 -9.98130 -9.70724 -9.13822 -9.10122 -8.59943 -6.81580 -5.89649 -3.33514 -0.19527 2.26178 2.47613 3.01375 3.30192 3.37876 3.39194 3.40493 3.79664 3.96172 4.15911 4.37825 4.38251 4.48483 4.58795 4.92732 4.95413 5.03392 5.06982 5.22085 5.26424 5.28013 5.38723 5.41076 5.45560 5.73120 5.77235 5.95870 6.08780 6.21640 6.30813 6.40773 6.42539 6.42640 6.68584 7.04400 7.40352 7.46433 7.65867 7.78775 8.08404 8.27737 9.05831 9.68488 10.25010 11.18480 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.001880 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.470387 B =14893.091326 C =14949.218721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.615 3.385 4 O -0.957 6.957 5 O -0.953 6.953 6 C -0.611 4.611 7 C -0.136 4.136 8 C 0.519 3.481 9 O -0.542 6.542 10 N -0.718 5.718 11 C 0.129 3.871 12 C 0.064 3.936 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.418 0.582 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.255 0.745 41 H 0.095 0.905 42 H 0.028 0.972 43 H 0.041 0.959 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -21.251 -14.408 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.706 3.294 4 O -0.947 6.947 5 O -0.943 6.943 6 C -0.740 4.740 7 C -0.178 4.178 8 C 0.304 3.696 9 O -0.419 6.419 10 N -0.369 5.369 11 C 0.006 3.994 12 C 0.004 3.996 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.310 6.310 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.252 0.748 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.240 0.760 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.942 -21.037 -14.603 25.910 hybrid contribution 0.927 0.446 1.154 1.546 sum -3.015 -20.591 -13.449 24.778 Atomic orbital electron populations 1.21540 0.78578 1.04415 1.02162 1.55359 1.16094 1.24584 1.92211 1.04925 0.73710 0.73956 0.76807 1.93620 1.32636 1.81200 1.87221 1.93619 1.78787 1.72271 1.49593 1.30389 1.11928 1.07643 1.24078 1.21356 1.02751 0.94894 0.98766 1.20126 0.80438 0.81228 0.87831 1.90701 1.36382 1.62835 1.52015 1.45955 1.49975 1.19885 1.21094 1.21460 1.01115 0.92069 0.84789 1.22815 0.96763 0.88044 0.91960 0.92261 1.21438 0.97575 0.88480 0.93072 1.44077 1.55051 1.07075 1.25570 1.19234 1.14931 0.92408 1.11929 0.91269 1.25062 0.97920 0.97527 0.99196 1.70044 1.31115 1.04182 1.49288 0.86173 0.82057 0.78744 0.79485 1.20197 1.21452 1.21609 1.21452 0.99244 0.94052 0.83944 1.23331 0.96036 0.84049 1.00384 1.87785 1.62772 1.25160 1.55236 0.89892 0.91989 0.91216 0.74794 0.84218 0.84025 0.87194 0.87094 0.76004 0.90537 0.90010 0.95228 0.91761 0.93501 0.88732 0.95341 0.94050 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.03 59.84 0.66 0.95 16 2 N -1.12 -5.56 6.08 -16.64 -0.10 -5.66 16 3 S 2.61 19.32 5.46 -107.50 -0.59 18.74 16 4 O -0.96 -10.01 18.08 -57.54 -1.04 -11.05 16 5 O -0.95 -10.20 17.73 -57.54 -1.02 -11.22 16 6 C -0.61 -4.18 5.31 37.16 0.20 -3.98 16 7 C -0.14 -1.09 5.71 -27.88 -0.16 -1.25 16 8 C 0.52 6.16 7.83 -10.98 -0.09 6.07 16 9 O -0.54 -8.23 15.98 5.56 0.09 -8.14 16 10 N -0.72 -8.53 5.50 -60.29 -0.33 -8.86 16 11 C 0.13 1.83 5.35 -4.04 -0.02 1.81 16 12 C 0.06 1.06 2.81 -26.57 -0.07 0.99 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.12 2.46 6.02 -3.54 -0.02 2.43 16 15 N -0.59 -14.52 3.05 -171.83 -0.52 -15.05 16 16 C -0.26 -6.83 9.65 -15.06 -0.15 -6.97 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 19 N -0.90 -25.61 11.14 55.49 0.62 -24.99 16 20 Si 0.91 21.14 29.59 -169.99 -5.03 16.11 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.14 3.23 5.44 -3.53 -0.02 3.21 16 25 C 0.04 0.74 6.98 37.31 0.26 1.00 16 26 O -0.39 -6.99 10.33 -35.23 -0.36 -7.35 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.16 7.73 -51.93 -0.40 -0.24 16 29 H 0.07 0.30 8.04 -51.93 -0.42 -0.12 16 30 H 0.42 1.43 8.92 -34.47 -0.31 1.12 16 31 H 0.14 0.86 7.73 -51.93 -0.40 0.46 16 32 H 0.14 0.88 8.10 -51.92 -0.42 0.46 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.41 4.04 8.47 -40.82 -0.35 3.70 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -37.07 376.05 -8.92 -46.00 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.80 Total: 1.59 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 0.50 Total: 4.23 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.34 Total: -54.56 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -2.34 Total: -37.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: 19.32 SS G_CDS: -0.59 Total: 18.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.07 -8.92 -46.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268021071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.739 kcal (2) G-P(sol) polarization free energy of solvation -37.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds