Wall clock time and date at job start Tue Mar 31 2020 18:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65604 * 119.99871 * 2 1 4 4 O 1.42091 * 104.28144 * 181.07469 * 3 2 1 5 5 O 1.42107 * 104.27654 * 308.92953 * 3 2 1 6 6 C 1.81402 * 104.44928 * 64.99700 * 3 2 1 7 7 C 1.52996 * 109.46999 * 179.97438 * 6 3 2 8 8 C 1.50702 * 109.46836 * 180.02562 * 7 6 3 9 9 O 1.21277 * 119.99999 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99997 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99946 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46861 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.51241 * 304.90260 * 12 11 10 14 14 C 1.53298 * 109.51241 * 184.74658 * 12 11 10 15 15 N 1.47146 * 108.38733 * 187.77667 * 14 12 11 16 16 C 1.36938 * 120.98309 * 230.51697 * 15 14 12 17 17 H 1.08000 * 119.99779 * 26.23995 * 16 15 14 18 18 C 1.38813 * 119.99943 * 206.24218 * 16 15 14 19 19 N 1.31615 * 119.99865 * 16.91322 * 18 16 15 20 20 Si 1.86797 * 119.99676 * 196.91854 * 18 16 15 21 21 H 1.48500 * 109.47589 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46970 * 120.00008 * 20 18 16 23 23 H 1.48507 * 109.47201 * 239.99659 * 20 18 16 24 24 C 1.47154 * 118.03378 * 50.53284 * 15 14 12 25 25 C 1.53294 * 108.38771 * 309.46578 * 24 15 14 26 26 O 1.42961 * 109.22211 * 52.30388 * 25 24 15 27 27 H 1.08999 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47426 * 299.99572 * 1 2 3 29 29 H 1.08996 * 109.47357 * 60.00327 * 1 2 3 30 30 H 0.96993 * 120.00525 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47090 * 300.00396 * 6 3 2 32 32 H 1.09008 * 109.46419 * 60.00379 * 6 3 2 33 33 H 1.08994 * 109.47715 * 300.00248 * 7 6 3 34 34 H 1.09008 * 109.47033 * 60.00990 * 7 6 3 35 35 H 0.97007 * 120.00126 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47320 * 299.99938 * 11 10 8 37 37 H 1.09002 * 109.47001 * 60.00758 * 11 10 8 38 38 H 1.09001 * 109.68231 * 307.50291 * 14 12 11 39 39 H 1.08997 * 109.67806 * 68.04904 * 14 12 11 40 40 H 0.97006 * 119.99667 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.67752 * 189.74274 * 24 15 14 42 42 H 1.08998 * 109.71151 * 69.21115 * 24 15 14 43 43 H 1.08995 * 109.51625 * 292.38011 * 25 24 15 44 44 H 1.09003 * 109.51076 * 172.22286 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6605 1.0494 -0.0258 5 8 1.7187 2.1704 -1.0713 6 6 1.8762 2.1974 1.5920 7 6 2.5898 3.5453 1.7136 8 6 2.2440 4.1791 3.0365 9 8 1.5006 3.6086 3.8063 10 7 2.7611 5.3799 3.3641 11 6 2.4245 5.9962 4.6498 12 6 3.1372 7.3447 4.7710 13 1 4.2082 7.2049 4.6251 14 6 2.8816 7.9358 6.1622 15 7 3.4154 9.3067 6.1892 16 6 4.2505 9.7183 7.1934 17 1 4.8590 8.9974 7.7192 18 6 4.3150 11.0621 7.5354 19 7 3.3634 11.8856 7.1500 20 14 5.7524 11.7015 8.5425 21 1 6.6800 10.5826 8.8474 22 1 6.4725 12.7455 7.7700 23 1 5.2473 12.2848 9.8114 24 6 3.0249 10.2225 5.1056 25 6 3.2735 9.5201 3.7659 26 8 2.6332 8.2420 3.7785 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8399 -0.0004 31 1 0.7986 2.3497 1.6509 32 1 2.1957 1.5431 2.4032 33 1 3.6673 3.3927 1.6549 34 1 2.2706 4.1999 0.9024 35 1 3.3554 5.8364 2.7481 36 1 1.3469 6.1486 4.7087 37 1 2.7440 5.3419 5.4610 38 1 1.8102 7.9549 6.3617 39 1 3.3851 7.3307 6.9161 40 1 3.4087 12.8248 7.3887 41 1 3.6234 11.1319 5.1600 42 1 1.9681 10.4725 5.1985 43 1 4.3452 9.3889 3.6169 44 1 2.8639 10.1245 2.9565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268021071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:31 Heat of formation + Delta-G solvation = -161.702343 kcal Electronic energy + Delta-G solvation = -26777.939385 eV Core-core repulsion = 22664.084568 eV Total energy + Delta-G solvation = -4113.854817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94219 -39.98574 -38.20896 -37.07300 -36.54242 -35.85443 -35.79297 -34.27260 -33.35455 -32.28512 -29.32576 -27.62846 -26.78547 -25.69190 -24.90209 -23.28230 -21.82814 -21.12402 -20.30499 -19.10058 -18.86529 -18.22820 -17.63922 -17.42051 -17.24051 -16.96088 -16.79992 -16.57677 -16.14507 -15.71390 -15.51669 -15.35913 -15.01529 -14.86228 -14.64616 -14.50682 -14.32883 -13.75939 -13.61005 -13.54862 -13.23685 -13.21233 -13.12586 -13.02283 -12.72124 -12.55801 -12.51554 -12.43177 -12.17962 -12.06526 -11.94884 -11.87787 -11.35776 -11.03325 -10.81121 -10.55993 -10.43699 -10.13939 -8.77183 -7.92777 -5.40163 -0.77660 1.45300 1.47356 1.57405 1.57846 1.75665 2.12662 2.47078 2.76019 2.79647 3.22485 3.23580 3.34993 3.48008 3.80872 3.85110 3.97917 4.07311 4.23502 4.24800 4.38716 4.47565 4.49243 4.53888 4.61905 4.67218 4.71163 4.77344 4.82827 4.89550 4.95238 5.04607 5.05566 5.23618 5.36526 5.54561 5.60389 6.12386 6.24409 6.31838 6.50581 7.04734 7.17883 7.72887 8.26170 9.13340 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.001880 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.470387 B =14893.091326 C =14949.218721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.639 3.361 4 O -0.988 6.988 5 O -0.988 6.988 6 C -0.605 4.605 7 C -0.142 4.142 8 C 0.519 3.481 9 O -0.578 6.578 10 N -0.714 5.714 11 C 0.140 3.860 12 C 0.078 3.922 13 H 0.071 0.929 14 C 0.116 3.884 15 N -0.613 5.613 16 C -0.265 4.265 17 H 0.073 0.927 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.294 1.294 24 C 0.142 3.858 25 C 0.055 3.945 26 O -0.389 6.389 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.426 0.574 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.017 0.983 39 H 0.072 0.928 40 H 0.251 0.749 41 H 0.067 0.933 42 H -0.002 1.002 43 H 0.052 0.948 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 -22.932 -15.244 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.879 5.879 3 S 2.731 3.269 4 O -0.979 6.979 5 O -0.977 6.977 6 C -0.735 4.735 7 C -0.183 4.183 8 C 0.305 3.695 9 O -0.458 6.458 10 N -0.366 5.366 11 C 0.015 3.985 12 C 0.018 3.982 13 H 0.089 0.911 14 C -0.011 4.011 15 N -0.338 5.338 16 C -0.394 4.394 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.221 1.221 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.262 0.738 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.253 0.747 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.035 0.965 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.016 0.984 43 H 0.070 0.930 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.133 -22.758 -15.483 27.703 hybrid contribution 0.591 0.906 1.463 1.819 sum -2.542 -21.852 -14.020 26.087 Atomic orbital electron populations 1.21777 0.77544 1.06030 1.02450 1.55112 1.16748 1.24064 1.91997 1.04026 0.72684 0.73830 0.76356 1.93573 1.34776 1.81790 1.87730 1.93575 1.79196 1.73439 1.51529 1.30339 1.12446 1.07254 1.23478 1.21521 1.04520 0.95404 0.96856 1.20716 0.79422 0.80684 0.88655 1.90689 1.37976 1.63671 1.53454 1.45869 1.50179 1.20090 1.20425 1.21194 0.99900 0.90946 0.86442 1.22669 0.97717 0.88504 0.89283 0.91093 1.21613 0.96674 0.86871 0.95909 1.44360 1.55168 1.08619 1.25624 1.19585 1.15050 0.92707 1.12090 0.90887 1.25846 1.00234 0.97847 1.00824 1.70198 1.32911 1.04139 1.50959 0.85145 0.79157 0.78169 0.77568 1.18883 1.21442 1.22119 1.21325 0.96732 0.93844 0.86487 1.23151 0.96990 0.84126 0.98042 1.87802 1.62995 1.24838 1.55215 0.87708 0.90761 0.91981 0.73801 0.83434 0.83177 0.84853 0.85156 0.74667 0.91925 0.89254 0.96505 0.90929 0.93940 0.91463 0.98381 0.92956 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 11.03 127.77 1.41 1.78 16 2 N -1.12 -9.18 6.08 -206.56 -1.25 -10.44 16 3 S 2.64 35.05 5.46 -56.49 -0.31 34.75 16 4 O -0.99 -19.42 18.08 -127.65 -2.31 -21.73 16 5 O -0.99 -20.05 17.73 -127.65 -2.26 -22.32 16 6 C -0.60 -6.94 5.31 71.98 0.38 -6.55 16 7 C -0.14 -1.89 5.71 29.85 0.17 -1.72 16 8 C 0.52 11.16 7.83 87.66 0.69 11.84 16 9 O -0.58 -16.64 15.98 -3.02 -0.05 -16.69 16 10 N -0.71 -15.26 5.50 -463.05 -2.55 -17.81 16 11 C 0.14 3.72 5.35 86.38 0.46 4.19 16 12 C 0.08 2.45 2.81 30.70 0.09 2.54 16 13 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 14 C 0.12 4.63 6.02 86.36 0.52 5.15 16 15 N -0.61 -30.16 3.05 -697.54 -2.13 -32.28 16 16 C -0.26 -14.15 9.65 84.03 0.81 -13.34 16 17 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 18 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 19 N -0.94 -54.49 11.14 21.65 0.24 -54.25 16 20 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 C 0.14 6.70 5.44 86.35 0.47 7.17 16 25 C 0.05 1.94 6.98 72.08 0.50 2.44 16 26 O -0.39 -13.22 10.33 -148.98 -1.54 -14.76 16 27 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.07 0.23 7.73 -2.39 -0.02 0.21 16 29 H 0.06 0.45 8.04 -2.39 -0.02 0.43 16 30 H 0.43 2.20 8.92 -96.75 -0.86 1.33 16 31 H 0.15 1.49 7.73 -2.39 -0.02 1.48 16 32 H 0.15 1.51 8.10 -2.39 -0.02 1.49 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.42 7.06 8.47 -92.70 -0.79 6.27 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 40 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 41 H 0.07 3.53 6.14 -2.38 -0.01 3.52 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -80.36 376.05 -4.83 -85.19 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -0.63 Total: 13.53 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.92 Total: 11.06 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -5.69 Total: -114.78 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: -6.16 Total: -75.49 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 35.05 SS G_CDS: -0.31 Total: 34.75 kcal Total: -80.36 -4.83 -85.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268021071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.512 kcal (2) G-P(sol) polarization free energy of solvation -80.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds