Wall clock time and date at job start Tue Mar 31 2020 18:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81401 * 109.47019 * 2 1 4 4 O 1.42101 * 110.54030 * 68.37785 * 3 2 1 5 5 O 1.42095 * 110.54346 * 291.62796 * 3 2 1 6 6 N 1.65597 * 104.45164 * 180.02562 * 3 2 1 7 7 C 1.46507 * 119.99809 * 64.99878 * 6 3 2 8 8 C 1.50707 * 109.46679 * 165.00089 * 7 6 3 9 9 O 1.21275 * 120.00359 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99405 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99817 * 175.54290 * 10 8 7 12 12 C 1.53001 * 112.94703 * 302.72558 * 11 10 8 13 13 C 1.53002 * 109.46881 * 304.00297 * 12 11 10 14 14 O 1.42904 * 109.47152 * 175.20763 * 13 12 11 15 15 C 1.53943 * 113.74339 * 171.12949 * 11 10 8 16 16 N 1.47812 * 86.03891 * 222.08523 * 15 11 10 17 17 C 1.36936 * 134.46004 * 204.64436 * 16 15 11 18 18 H 1.08000 * 120.00271 * 184.78641 * 17 16 15 19 19 C 1.38817 * 119.99673 * 4.77903 * 17 16 15 20 20 N 1.31618 * 119.99914 * 5.12615 * 19 17 16 21 21 Si 1.86796 * 119.99980 * 185.12639 * 19 17 16 22 22 H 1.48493 * 109.47364 * 94.99796 * 21 19 17 23 23 H 1.48497 * 109.47315 * 215.00019 * 21 19 17 24 24 H 1.48502 * 109.47124 * 334.99620 * 21 19 17 25 25 C 1.47587 * 91.05059 * 24.54926 * 16 15 11 26 26 H 1.09004 * 109.47113 * 299.99445 * 1 2 3 27 27 H 1.08995 * 109.47518 * 60.00202 * 1 2 3 28 28 H 1.09004 * 109.46729 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47113 * 240.00554 * 2 1 3 30 30 H 1.08996 * 109.47638 * 120.00336 * 2 1 3 31 31 H 0.97003 * 120.00558 * 245.00755 * 6 3 2 32 32 H 1.08998 * 109.47001 * 45.00724 * 7 6 3 33 33 H 1.08999 * 109.47428 * 285.00185 * 7 6 3 34 34 H 0.96996 * 120.00233 * 355.27439 * 10 8 7 35 35 H 1.09002 * 109.47030 * 63.99412 * 12 11 10 36 36 H 1.08996 * 109.47142 * 183.99833 * 12 11 10 37 37 H 1.09001 * 109.46622 * 295.20510 * 13 12 11 38 38 H 1.08997 * 109.47344 * 55.20510 * 13 12 11 39 39 H 0.96698 * 114.00106 * 179.97438 * 14 13 12 40 40 H 1.08997 * 113.76777 * 336.35251 * 15 11 10 41 41 H 1.09003 * 113.76727 * 107.74992 * 15 11 10 42 42 H 0.97000 * 119.99985 * 180.02562 * 20 19 17 43 43 H 1.08991 * 113.76973 * 221.15224 * 25 16 15 44 44 H 1.08999 * 113.86812 * 89.76273 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2369 6 7 3.7842 1.5654 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9392 1.2791 -1.0793 9 8 6.3759 1.9358 -0.1580 10 7 6.7710 0.8282 -2.0392 11 6 8.1846 1.2122 -2.0232 12 6 8.3914 2.7279 -2.0486 13 6 7.6809 3.3191 -3.2679 14 8 7.7790 4.7443 -3.2319 15 6 9.0451 0.4519 -3.0486 16 7 10.0553 0.3528 -1.9741 17 6 11.4155 0.1966 -1.9479 18 1 11.9269 0.0743 -1.0045 19 6 12.1369 0.1954 -3.1338 20 7 11.5289 0.4447 -4.2742 21 14 13.9706 -0.1602 -3.1112 22 1 14.1987 -1.6019 -3.3843 23 1 14.6456 0.6539 -4.1537 24 1 14.5253 0.1849 -1.7776 25 6 9.0102 0.4922 -0.9414 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.2988 1.8764 0.7605 32 1 4.0528 1.3773 -2.0723 33 1 4.3228 -0.1131 -1.1374 34 1 6.4344 0.2463 -2.7385 35 1 7.9788 3.1662 -1.1399 36 1 9.4572 2.9483 -2.1069 37 1 8.1499 2.9455 -4.1782 38 1 6.6309 3.0267 -3.2538 39 1 7.3498 5.1871 -3.9767 40 1 8.6260 -0.5088 -3.3475 41 1 9.3609 1.0617 -3.8951 42 1 12.0329 0.4434 -5.1030 43 1 9.2981 1.1339 -0.1088 44 1 8.5797 -0.4558 -0.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276057205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:51 Heat of formation + Delta-G solvation = -99.233328 kcal Electronic energy + Delta-G solvation = -27795.297897 eV Core-core repulsion = 23684.151940 eV Total energy + Delta-G solvation = -4111.145957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.19918 -38.14756 -37.38251 -36.35545 -36.24673 -34.87720 -33.78575 -33.60073 -32.00916 -30.39598 -27.70875 -26.70457 -25.12783 -24.50763 -23.34410 -21.79792 -20.53550 -19.66659 -18.81068 -18.34340 -17.37056 -16.97669 -16.86512 -16.58501 -16.23409 -15.72823 -15.50588 -15.24688 -14.78671 -14.59875 -14.39075 -13.94950 -13.71543 -13.62754 -13.51710 -13.09219 -12.93085 -12.56581 -12.41480 -12.38350 -12.28915 -12.03217 -11.89517 -11.77464 -11.60031 -11.13151 -11.02261 -10.95373 -10.80947 -10.72380 -10.24359 -10.07364 -9.91396 -9.71120 -9.66063 -9.26579 -8.94555 -8.70358 -6.97859 -5.85256 -3.18930 -0.10293 2.33839 2.66108 3.24264 3.35933 3.41626 3.43161 3.47967 3.82074 4.13486 4.37471 4.37635 4.47310 4.54649 4.70766 4.85771 4.97964 5.08067 5.12028 5.16870 5.22129 5.33986 5.42775 5.46262 5.54314 5.73693 5.79226 5.92662 6.24752 6.39898 6.40264 6.56387 6.70725 6.75889 6.79913 7.05789 7.24068 7.43516 7.67580 7.89591 7.92878 8.32644 8.95459 9.62159 10.47279 11.30844 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.002601 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.300047 B =10763.971424 C =11344.847034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.634 4.634 3 S 2.615 3.385 4 O -0.954 6.954 5 O -0.954 6.954 6 N -1.107 6.107 7 C 0.092 3.908 8 C 0.509 3.491 9 O -0.524 6.524 10 N -0.712 5.712 11 C 0.126 3.874 12 C -0.097 4.097 13 C 0.083 3.917 14 O -0.574 6.574 15 C 0.158 3.842 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.124 3.876 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.429 0.571 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.372 0.628 40 H 0.028 0.972 41 H 0.091 0.909 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 -2.428 2.980 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.707 3.293 4 O -0.944 6.944 5 O -0.944 6.944 6 N -0.870 5.870 7 C -0.038 4.038 8 C 0.293 3.707 9 O -0.400 6.400 10 N -0.364 5.364 11 C 0.040 3.960 12 C -0.135 4.135 13 C 0.005 3.995 14 O -0.379 6.379 15 C 0.032 3.968 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.003 4.003 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.267 0.733 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.218 0.782 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.131 -1.348 3.905 21.531 hybrid contribution 0.879 -1.346 -0.686 1.748 sum -20.252 -2.694 3.219 20.682 Atomic orbital electron populations 1.21506 0.90397 1.05139 1.03565 1.30531 1.07388 1.26575 1.11854 1.04927 0.72784 0.77207 0.74420 1.93622 1.82866 1.72862 1.45035 1.93608 1.83289 1.71920 1.45613 1.55353 1.25736 1.77963 1.27940 1.21155 0.92845 0.99241 0.90600 1.20274 0.87576 0.80097 0.82790 1.90694 1.77046 1.38974 1.33264 1.46188 1.10359 1.50917 1.28942 1.23029 0.76887 0.94779 1.01334 1.21341 1.02617 0.91714 0.97864 1.22120 0.98217 0.80123 0.99032 1.86497 1.80868 1.19673 1.50848 1.22719 0.85140 0.95669 0.93289 1.45625 1.00880 1.85369 1.01078 1.18997 0.79479 1.42968 0.93358 0.90029 1.24775 0.98235 1.01990 0.95275 1.69777 1.34927 1.54515 0.97416 0.86066 0.84504 0.77696 0.77312 1.21667 1.21620 1.20486 1.22861 0.88087 0.96130 0.93190 0.90904 0.90847 0.89952 0.84949 0.84720 0.73282 0.87349 0.88931 0.76634 0.90272 0.89104 0.93230 0.94704 0.78219 0.95389 0.89144 0.93570 0.93053 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.92 37.16 0.37 -0.34 16 2 C -0.63 -3.05 6.79 37.16 0.25 -2.79 16 3 S 2.62 23.10 5.46 -107.50 -0.59 22.51 16 4 O -0.95 -11.80 18.08 -57.54 -1.04 -12.84 16 5 O -0.95 -11.34 17.49 -57.54 -1.01 -12.35 16 6 N -1.11 -10.32 5.82 -11.65 -0.07 -10.38 16 7 C 0.09 0.78 6.61 -5.19 -0.03 0.74 16 8 C 0.51 6.62 7.50 -10.98 -0.08 6.54 16 9 O -0.52 -8.85 13.91 5.56 0.08 -8.77 16 10 N -0.71 -9.29 4.52 -49.07 -0.22 -9.51 16 11 C 0.13 2.24 0.68 -134.03 -0.09 2.15 16 12 C -0.10 -1.84 4.68 -26.73 -0.13 -1.96 16 13 C 0.08 1.35 6.86 37.16 0.25 1.60 16 14 O -0.57 -9.38 13.66 -35.23 -0.48 -9.86 16 15 C 0.16 3.34 6.90 -2.84 -0.02 3.32 16 16 N -0.60 -14.75 3.54 -177.49 -0.63 -15.37 16 17 C -0.22 -6.00 10.69 -15.06 -0.16 -6.16 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -25.89 11.29 55.49 0.63 -25.26 16 21 Si 0.91 21.65 29.56 -169.99 -5.02 16.63 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.12 2.55 8.02 -2.96 -0.02 2.52 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.43 4.51 7.67 -34.47 -0.26 4.25 16 32 H 0.11 0.77 7.69 -51.93 -0.40 0.37 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.40 3.87 8.67 -40.82 -0.35 3.52 16 35 H 0.08 1.59 6.56 -51.93 -0.34 1.25 16 36 H 0.09 2.02 8.02 -51.93 -0.42 1.61 16 37 H 0.05 0.82 7.60 -51.93 -0.39 0.42 16 38 H 0.03 0.50 7.46 -51.93 -0.39 0.11 16 39 H 0.37 4.10 9.12 45.56 0.42 4.51 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.14 6.28 -51.93 -0.33 1.81 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.05 1.10 8.10 -51.93 -0.42 0.68 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -37.97 377.24 -8.24 -46.22 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.82 Total: 7.95 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 0.24 Total: 5.36 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.29 Total: -60.53 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -2.45 Total: -43.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 23.10 SS G_CDS: -0.59 Total: 22.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.97 -8.24 -46.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276057205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.018 kcal (2) G-P(sol) polarization free energy of solvation -37.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds