Wall clock time and date at job start Tue Mar 31 2020 18:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81401 * 109.47019 * 2 1 4 4 O 1.42101 * 110.54030 * 68.37785 * 3 2 1 5 5 O 1.42095 * 110.54346 * 291.62796 * 3 2 1 6 6 N 1.65597 * 104.45164 * 180.02562 * 3 2 1 7 7 C 1.46507 * 119.99809 * 64.99878 * 6 3 2 8 8 C 1.50707 * 109.46679 * 165.00089 * 7 6 3 9 9 O 1.21275 * 120.00359 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99405 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99817 * 175.54290 * 10 8 7 12 12 C 1.53001 * 112.94703 * 302.72558 * 11 10 8 13 13 C 1.53002 * 109.46881 * 304.00297 * 12 11 10 14 14 O 1.42904 * 109.47152 * 175.20763 * 13 12 11 15 15 C 1.53943 * 113.74339 * 171.12949 * 11 10 8 16 16 N 1.47812 * 86.03891 * 222.08523 * 15 11 10 17 17 C 1.36936 * 134.46004 * 204.64436 * 16 15 11 18 18 H 1.08000 * 120.00271 * 184.78641 * 17 16 15 19 19 C 1.38817 * 119.99673 * 4.77903 * 17 16 15 20 20 N 1.31618 * 119.99914 * 5.12615 * 19 17 16 21 21 Si 1.86796 * 119.99980 * 185.12639 * 19 17 16 22 22 H 1.48493 * 109.47364 * 94.99796 * 21 19 17 23 23 H 1.48497 * 109.47315 * 215.00019 * 21 19 17 24 24 H 1.48502 * 109.47124 * 334.99620 * 21 19 17 25 25 C 1.47587 * 91.05059 * 24.54926 * 16 15 11 26 26 H 1.09004 * 109.47113 * 299.99445 * 1 2 3 27 27 H 1.08995 * 109.47518 * 60.00202 * 1 2 3 28 28 H 1.09004 * 109.46729 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47113 * 240.00554 * 2 1 3 30 30 H 1.08996 * 109.47638 * 120.00336 * 2 1 3 31 31 H 0.97003 * 120.00558 * 245.00755 * 6 3 2 32 32 H 1.08998 * 109.47001 * 45.00724 * 7 6 3 33 33 H 1.08999 * 109.47428 * 285.00185 * 7 6 3 34 34 H 0.96996 * 120.00233 * 355.27439 * 10 8 7 35 35 H 1.09002 * 109.47030 * 63.99412 * 12 11 10 36 36 H 1.08996 * 109.47142 * 183.99833 * 12 11 10 37 37 H 1.09001 * 109.46622 * 295.20510 * 13 12 11 38 38 H 1.08997 * 109.47344 * 55.20510 * 13 12 11 39 39 H 0.96698 * 114.00106 * 179.97438 * 14 13 12 40 40 H 1.08997 * 113.76777 * 336.35251 * 15 11 10 41 41 H 1.09003 * 113.76727 * 107.74992 * 15 11 10 42 42 H 0.97000 * 119.99985 * 180.02562 * 20 19 17 43 43 H 1.08991 * 113.76973 * 221.15224 * 25 16 15 44 44 H 1.08999 * 113.86812 * 89.76273 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2369 6 7 3.7842 1.5654 -0.0007 7 6 4.4665 0.9673 -1.1510 8 6 5.9392 1.2791 -1.0793 9 8 6.3759 1.9358 -0.1580 10 7 6.7710 0.8282 -2.0392 11 6 8.1846 1.2122 -2.0232 12 6 8.3914 2.7279 -2.0486 13 6 7.6809 3.3191 -3.2679 14 8 7.7790 4.7443 -3.2319 15 6 9.0451 0.4519 -3.0486 16 7 10.0553 0.3528 -1.9741 17 6 11.4155 0.1966 -1.9479 18 1 11.9269 0.0743 -1.0045 19 6 12.1369 0.1954 -3.1338 20 7 11.5289 0.4447 -4.2742 21 14 13.9706 -0.1602 -3.1112 22 1 14.1987 -1.6019 -3.3843 23 1 14.6456 0.6539 -4.1537 24 1 14.5253 0.1849 -1.7776 25 6 9.0102 0.4922 -0.9414 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.2988 1.8764 0.7605 32 1 4.0528 1.3773 -2.0723 33 1 4.3228 -0.1131 -1.1374 34 1 6.4344 0.2463 -2.7385 35 1 7.9788 3.1662 -1.1399 36 1 9.4572 2.9483 -2.1069 37 1 8.1499 2.9455 -4.1782 38 1 6.6309 3.0267 -3.2538 39 1 7.3498 5.1871 -3.9767 40 1 8.6260 -0.5088 -3.3475 41 1 9.3609 1.0617 -3.8951 42 1 12.0329 0.4434 -5.1030 43 1 9.2981 1.1339 -0.1088 44 1 8.5797 -0.4558 -0.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276057205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:50 Heat of formation + Delta-G solvation = -134.467935 kcal Electronic energy + Delta-G solvation = -27796.825785 eV Core-core repulsion = 23684.151940 eV Total energy + Delta-G solvation = -4112.673845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50497 -39.51092 -38.17029 -37.70406 -37.02237 -35.67884 -35.23722 -33.97374 -33.77942 -31.92427 -29.18451 -27.93491 -26.81621 -24.94699 -24.88666 -23.33606 -21.79089 -20.38058 -20.15691 -19.15244 -18.75774 -18.48047 -17.96153 -17.32189 -17.20049 -16.90572 -16.71149 -16.46871 -16.14026 -15.76885 -15.56345 -15.16718 -15.09821 -14.55858 -14.32269 -14.21188 -13.88878 -13.68997 -13.33518 -13.31208 -13.28627 -13.20105 -13.08909 -13.02433 -12.85731 -12.78540 -12.54210 -12.33841 -12.24770 -12.04212 -11.75623 -11.55627 -11.43960 -11.03525 -10.88544 -10.66966 -10.44567 -10.01988 -8.92556 -7.91308 -5.25327 -0.72634 1.46698 1.47647 1.56444 1.63025 1.67477 2.19007 2.50002 2.86982 3.15825 3.25748 3.27497 3.37997 3.64586 3.66187 3.78952 3.98536 4.13388 4.24954 4.32576 4.36249 4.40971 4.46518 4.48507 4.64816 4.73475 4.74307 4.78805 4.87147 4.91878 5.03975 5.15900 5.17426 5.18879 5.27208 5.51145 5.73012 5.93586 5.95858 6.65568 6.90079 6.91466 7.31718 7.58327 8.51341 9.23727 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.002601 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.300047 B =10763.971424 C =11344.847034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.604 4.604 3 S 2.615 3.385 4 O -1.000 7.000 5 O -0.993 6.993 6 N -1.115 6.115 7 C 0.093 3.907 8 C 0.507 3.493 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.157 3.843 12 C -0.091 4.091 13 C 0.091 3.909 14 O -0.594 6.594 15 C 0.163 3.837 16 N -0.632 5.632 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.975 3.025 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.274 1.274 25 C 0.122 3.878 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.422 0.578 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.421 0.579 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.396 0.604 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.251 0.749 43 H 0.034 0.966 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.606 -4.495 2.500 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.738 4.738 3 S 2.712 3.288 4 O -0.990 6.990 5 O -0.983 6.983 6 N -0.876 5.876 7 C -0.036 4.036 8 C 0.292 3.708 9 O -0.445 6.445 10 N -0.355 5.355 11 C 0.069 3.931 12 C -0.130 4.130 13 C 0.013 3.987 14 O -0.403 6.403 15 C 0.037 3.963 16 N -0.359 5.359 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.804 3.196 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.199 1.199 25 C -0.004 4.004 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.184 0.816 30 H 0.175 0.825 31 H 0.259 0.741 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.245 0.755 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.214 -3.382 3.401 23.705 hybrid contribution 1.426 -0.717 -0.483 1.668 sum -21.788 -4.099 2.918 22.361 Atomic orbital electron populations 1.21707 0.90277 1.06550 1.03630 1.30291 1.07276 1.21500 1.14705 1.04780 0.72308 0.79045 0.72699 1.93559 1.83359 1.75513 1.46609 1.93553 1.83628 1.74516 1.46563 1.55327 1.25780 1.78615 1.27908 1.21425 0.88634 1.02503 0.91065 1.21086 0.89398 0.78763 0.81505 1.90697 1.78173 1.40676 1.34924 1.45870 1.08130 1.51455 1.30033 1.22180 0.79439 0.93333 0.98156 1.21195 1.00137 0.92876 0.98798 1.21987 0.99169 0.80274 0.97221 1.86440 1.81603 1.19679 1.52566 1.22621 0.85054 0.96150 0.92447 1.45902 1.00965 1.85615 1.03458 1.19268 0.81349 1.42389 0.93344 0.90525 1.25511 1.02048 1.02490 0.95094 1.69929 1.36011 1.55587 0.97570 0.85112 0.79950 0.77365 0.77200 1.21189 1.21981 1.19854 1.22971 0.87775 0.96821 0.92814 0.91315 0.90714 0.87694 0.81575 0.82521 0.74120 0.85445 0.83620 0.74118 0.91578 0.93421 0.93473 0.92010 0.75460 0.93935 0.91854 0.94036 0.94734 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.92 71.98 0.71 -0.28 16 2 C -0.60 -3.16 6.79 71.98 0.49 -2.67 16 3 S 2.61 41.62 5.46 -56.49 -0.31 41.31 16 4 O -1.00 -24.66 18.08 -127.65 -2.31 -26.97 16 5 O -0.99 -22.22 17.49 -127.65 -2.23 -24.45 16 6 N -1.12 -18.38 5.82 -190.77 -1.11 -19.49 16 7 C 0.09 1.21 6.61 85.63 0.57 1.77 16 8 C 0.51 11.96 7.50 87.66 0.66 12.62 16 9 O -0.57 -18.75 13.91 -3.01 -0.04 -18.79 16 10 N -0.70 -16.59 4.52 -427.54 -1.93 -18.52 16 11 C 0.16 5.53 0.68 5.36 0.00 5.53 16 12 C -0.09 -3.54 4.68 30.60 0.14 -3.40 16 13 C 0.09 2.91 6.86 71.98 0.49 3.40 16 14 O -0.59 -19.09 13.66 -148.98 -2.04 -21.12 16 15 C 0.16 6.90 6.90 86.44 0.60 7.49 16 16 N -0.63 -31.47 3.54 -715.46 -2.53 -34.01 16 17 C -0.24 -13.05 10.69 84.03 0.90 -12.15 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 20 N -0.94 -53.99 11.29 21.65 0.24 -53.75 16 21 Si 0.98 45.05 29.56 68.60 2.03 47.08 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.12 5.05 8.02 86.49 0.69 5.75 16 26 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 28 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.17 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.42 8.54 7.67 -96.74 -0.74 7.80 16 32 H 0.13 1.25 7.69 -2.39 -0.02 1.23 16 33 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.42 6.58 8.67 -92.71 -0.80 5.78 16 35 H 0.07 2.74 6.56 -2.39 -0.02 2.72 16 36 H 0.05 2.24 8.02 -2.39 -0.02 2.22 16 37 H 0.05 1.53 7.60 -2.39 -0.02 1.52 16 38 H 0.06 1.64 7.46 -2.39 -0.02 1.62 16 39 H 0.40 8.17 9.12 -74.06 -0.68 7.50 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 3.06 6.28 -2.39 -0.01 3.04 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.03 1.52 8.10 -2.39 -0.02 1.50 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -86.72 377.24 -5.68 -92.40 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -1.17 Total: 20.97 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.72 Total: 15.33 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.33 Total: -125.77 kcal Atomic # 8 Polarization: -84.71 SS G_CDS: -6.62 Total: -91.33 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 41.62 SS G_CDS: -0.31 Total: 41.31 kcal Total: -86.72 -5.68 -92.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276057205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.067 kcal (2) G-P(sol) polarization free energy of solvation -86.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds