Wall clock time and date at job start Tue Mar 31 2020 18:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99843 * 2 1 4 4 C 1.50694 * 109.46859 * 84.99804 * 3 2 1 5 5 O 1.21278 * 120.00419 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00020 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00227 * 175.54327 * 6 4 3 8 8 C 1.53004 * 112.94516 * 302.72672 * 7 6 4 9 9 C 1.53004 * 109.46655 * 303.99963 * 8 7 6 10 10 O 1.42901 * 109.46566 * 175.20631 * 9 8 7 11 11 C 1.53941 * 113.74530 * 171.13016 * 7 6 4 12 12 N 1.47812 * 86.03721 * 222.08747 * 11 7 6 13 13 C 1.36938 * 134.45256 * 204.64142 * 12 11 7 14 14 H 1.08000 * 119.99880 * 179.86848 * 13 12 11 15 15 C 1.38816 * 120.00342 * 359.87076 * 13 12 11 16 16 N 1.31623 * 119.99786 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47225 * 89.99584 * 17 15 13 19 19 H 1.48506 * 109.46568 * 209.99891 * 17 15 13 20 20 H 1.48498 * 109.46744 * 329.99197 * 17 15 13 21 21 C 1.47582 * 91.05137 * 24.54803 * 12 11 7 22 22 S 1.65599 * 120.00249 * 180.02562 * 2 1 3 23 23 C 1.81403 * 104.44725 * 269.99712 * 22 2 1 24 24 O 1.42093 * 104.27710 * 26.07241 * 22 2 1 25 25 O 1.42101 * 104.27680 * 153.93084 * 22 2 1 26 26 H 1.08999 * 109.46974 * 89.99752 * 1 2 3 27 27 H 1.08997 * 109.46825 * 209.99767 * 1 2 3 28 28 H 1.08999 * 109.47253 * 330.00297 * 1 2 3 29 29 H 1.09002 * 109.46742 * 325.00464 * 3 2 1 30 30 H 1.08998 * 109.47363 * 204.99776 * 3 2 1 31 31 H 0.96998 * 119.99383 * 355.27248 * 6 4 3 32 32 H 1.08999 * 109.47526 * 63.99858 * 8 7 6 33 33 H 1.08996 * 109.46936 * 184.00686 * 8 7 6 34 34 H 1.08992 * 109.47424 * 295.20945 * 9 8 7 35 35 H 1.09004 * 109.47159 * 55.21545 * 9 8 7 36 36 H 0.96706 * 113.99614 * 179.97438 * 10 9 8 37 37 H 1.09002 * 113.76865 * 336.35009 * 11 7 6 38 38 H 1.08996 * 113.76929 * 107.74611 * 11 7 6 39 39 H 0.96994 * 119.99783 * 180.02562 * 16 15 13 40 40 H 1.08996 * 113.76470 * 221.15346 * 21 12 11 41 41 H 1.09000 * 113.86613 * 89.77118 * 21 12 11 42 42 H 1.09004 * 109.46564 * 60.00302 * 23 22 2 43 43 H 1.08998 * 109.47017 * 179.97438 * 23 22 2 44 44 H 1.08992 * 109.47455 * 300.00329 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7657 1.4154 5 8 1.8781 1.1232 2.3337 6 7 2.9857 2.9238 1.6608 7 6 3.0411 3.4565 3.0244 8 6 1.6559 3.6772 3.6354 9 6 0.8376 4.5955 2.7254 10 8 -0.4914 4.7121 3.2374 11 6 3.9868 4.6610 3.1814 12 7 4.4199 4.0259 4.4439 13 6 4.9752 4.4864 5.6078 14 1 5.2040 3.7967 6.4068 15 6 5.2438 5.8397 5.7609 16 7 4.9653 6.6802 4.7870 17 14 6.0019 6.4677 7.3485 18 1 7.4823 6.4405 7.2348 19 1 5.5498 7.8605 7.5957 20 1 5.5760 5.6014 8.4769 21 6 4.0117 2.6974 3.9473 22 16 2.2930 -1.4341 -0.0006 23 6 2.5194 -1.8268 1.7559 24 8 1.3971 -2.3558 -0.6063 25 8 3.5395 -1.1187 -0.6057 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6500 2.0044 -0.5894 30 1 3.1858 1.1179 -0.4343 31 1 3.4161 3.4025 0.9352 32 1 1.1466 2.7188 3.7370 33 1 1.7611 4.1386 4.6172 34 1 1.3018 5.5811 2.6917 35 1 0.8041 4.1751 1.7202 36 1 -1.0678 5.2815 2.7093 37 1 4.7680 4.7080 2.4227 38 1 3.4697 5.6103 3.3206 39 1 5.1534 7.6257 4.8939 40 1 3.5145 2.0820 4.6970 41 1 4.7992 2.1649 3.4140 42 1 1.5452 -1.9196 2.2358 43 1 3.0620 -2.7673 1.8509 44 1 3.0866 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282518409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:27 Heat of formation + Delta-G solvation = -84.801325 kcal Electronic energy + Delta-G solvation = -28680.461463 eV Core-core repulsion = 24569.941324 eV Total energy + Delta-G solvation = -4110.520139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.19569 -38.21753 -37.32673 -36.44666 -36.21962 -35.74396 -33.74744 -32.04060 -30.49435 -29.50388 -28.81217 -27.10327 -25.39351 -25.13701 -23.35325 -21.83124 -20.55533 -19.12450 -18.74023 -17.89791 -17.39944 -17.16849 -16.85436 -16.52860 -16.22824 -15.52674 -15.18522 -14.80286 -14.60446 -14.55474 -14.16659 -13.86702 -13.68904 -13.50995 -13.29465 -13.15866 -12.90622 -12.65353 -12.47787 -12.27720 -12.02400 -11.85895 -11.81131 -11.70439 -11.53710 -11.20263 -11.12393 -10.99915 -10.81752 -10.77367 -10.31333 -10.12975 -9.93179 -9.70660 -9.51070 -8.97885 -8.94978 -8.67437 -6.99528 -5.86507 -3.18527 0.09915 2.30651 2.68348 3.29914 3.36308 3.41573 3.42553 3.67960 3.97519 4.36474 4.39027 4.41386 4.76295 4.77484 4.89486 5.05835 5.12389 5.14237 5.16708 5.37431 5.40984 5.46746 5.56896 5.65380 5.67954 5.73231 5.77143 5.87497 6.14765 6.24138 6.38690 6.41167 6.54743 6.68884 6.76508 7.04173 7.21895 7.41620 7.70669 7.82699 7.87971 8.35990 8.95459 9.61667 10.46901 11.31054 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.003225 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.794352 B = 8680.648916 C = 9549.597819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.982 5.982 3 C 0.093 3.907 4 C 0.485 3.515 5 O -0.530 6.530 6 N -0.712 5.712 7 C 0.124 3.876 8 C -0.095 4.095 9 C 0.083 3.917 10 O -0.575 6.575 11 C 0.166 3.834 12 N -0.604 5.604 13 C -0.221 4.221 14 H 0.082 0.918 15 C -0.005 4.005 16 N -0.922 5.922 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.124 3.876 22 S 2.612 3.388 23 C -0.659 4.659 24 O -0.959 6.959 25 O -0.959 6.959 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.400 0.600 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.372 0.628 37 H 0.032 0.968 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 -9.947 -12.374 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.818 5.818 3 C -0.036 4.036 4 C 0.269 3.731 5 O -0.406 6.406 6 N -0.364 5.364 7 C 0.038 3.962 8 C -0.134 4.134 9 C 0.006 3.994 10 O -0.379 6.379 11 C 0.040 3.960 12 N -0.330 5.330 13 C -0.349 4.349 14 H 0.100 0.900 15 C -0.202 4.202 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.003 4.003 22 S 2.705 3.295 23 C -0.810 4.810 24 O -0.949 6.949 25 O -0.949 6.949 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.234 0.766 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.217 0.783 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.868 -11.029 -11.776 18.411 hybrid contribution 0.547 1.273 0.767 1.583 sum -8.321 -9.756 -11.009 16.900 Atomic orbital electron populations 1.21434 0.77653 1.03519 1.01842 1.57050 1.15416 1.20004 1.89340 1.21338 1.00062 0.87240 0.95006 1.21288 0.78522 0.81629 0.91709 1.90668 1.48060 1.56076 1.45830 1.46245 1.55174 1.23615 1.11386 1.22986 0.95291 0.97973 0.79978 1.21327 0.92169 1.00239 0.99650 1.22118 0.82231 0.99149 0.95915 1.86502 1.23236 1.72302 1.55903 1.22596 0.91619 0.94294 0.87534 1.45688 1.73420 1.01532 1.12380 1.18996 1.33843 0.91722 0.90315 0.90020 1.24764 1.01488 0.95756 0.98171 1.69778 1.52863 1.02544 1.31714 0.86096 0.78865 0.78137 0.82537 1.21582 1.21576 1.20540 1.22853 0.93240 0.90171 0.94058 1.04873 0.73711 0.73092 0.77823 1.30440 1.12237 1.11787 1.26574 1.93597 1.64753 1.62337 1.74220 1.93589 1.44052 1.82952 1.74350 0.92284 0.91057 0.90789 0.86986 0.85922 0.76604 0.90228 0.89341 0.93346 0.94691 0.78267 0.95073 0.90002 0.93555 0.93177 0.94650 0.85225 0.86044 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 10.20 59.85 0.61 1.44 16 2 N -0.98 -9.41 2.61 -123.05 -0.32 -9.73 16 3 C 0.09 0.84 6.12 -5.19 -0.03 0.80 16 4 C 0.49 5.95 7.49 -10.99 -0.08 5.87 16 5 O -0.53 -7.92 13.20 5.56 0.07 -7.85 16 6 N -0.71 -9.12 4.52 -49.08 -0.22 -9.35 16 7 C 0.12 2.14 0.68 -134.04 -0.09 2.05 16 8 C -0.10 -1.70 4.68 -26.73 -0.13 -1.83 16 9 C 0.08 1.25 6.86 37.16 0.25 1.50 16 10 O -0.57 -8.50 13.66 -35.23 -0.48 -8.98 16 11 C 0.17 3.50 6.69 -2.84 -0.02 3.48 16 12 N -0.60 -14.71 3.55 -177.51 -0.63 -15.34 16 13 C -0.22 -6.01 10.70 -15.06 -0.16 -6.17 16 14 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 15 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 16 N -0.92 -25.97 11.39 55.49 0.63 -25.34 16 17 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 C 0.12 2.51 8.02 -2.97 -0.02 2.48 16 22 S 2.61 27.55 6.02 -107.50 -0.65 26.90 16 23 C -0.66 -6.12 10.52 101.05 1.06 -5.06 16 24 O -0.96 -12.29 17.09 -57.54 -0.98 -13.27 16 25 O -0.96 -12.54 16.53 -57.54 -0.95 -13.49 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.55 7.79 -51.93 -0.40 0.14 16 28 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.11 0.69 8.11 -51.93 -0.42 0.27 16 30 H 0.12 1.02 6.82 -51.93 -0.35 0.67 16 31 H 0.40 4.01 8.67 -40.82 -0.35 3.66 16 32 H 0.08 1.48 6.56 -51.93 -0.34 1.14 16 33 H 0.09 1.88 8.02 -51.93 -0.42 1.46 16 34 H 0.05 0.75 7.60 -51.93 -0.39 0.35 16 35 H 0.03 0.45 7.46 -51.93 -0.39 0.06 16 36 H 0.37 3.53 9.12 45.56 0.42 3.95 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.92 6.58 -51.93 -0.34 1.58 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.13 1.11 8.14 -51.92 -0.42 0.69 16 43 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.14 1.45 7.22 -51.93 -0.37 1.08 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -36.19 373.86 -7.49 -43.68 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.87 Total: 6.18 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 1.30 Total: 4.34 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.54 Total: -59.76 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -2.34 Total: -43.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 27.55 SS G_CDS: -0.65 Total: 26.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.19 -7.49 -43.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282518409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.119 kcal (2) G-P(sol) polarization free energy of solvation -36.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds