Wall clock time and date at job start Tue Mar 31 2020 18:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99843 * 2 1 4 4 C 1.50694 * 109.46859 * 84.99804 * 3 2 1 5 5 O 1.21278 * 120.00419 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00020 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00227 * 175.54327 * 6 4 3 8 8 C 1.53004 * 112.94516 * 302.72672 * 7 6 4 9 9 C 1.53004 * 109.46655 * 303.99963 * 8 7 6 10 10 O 1.42901 * 109.46566 * 175.20631 * 9 8 7 11 11 C 1.53941 * 113.74530 * 171.13016 * 7 6 4 12 12 N 1.47812 * 86.03721 * 222.08747 * 11 7 6 13 13 C 1.36938 * 134.45256 * 204.64142 * 12 11 7 14 14 H 1.08000 * 119.99880 * 179.86848 * 13 12 11 15 15 C 1.38816 * 120.00342 * 359.87076 * 13 12 11 16 16 N 1.31623 * 119.99786 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47225 * 89.99584 * 17 15 13 19 19 H 1.48506 * 109.46568 * 209.99891 * 17 15 13 20 20 H 1.48498 * 109.46744 * 329.99197 * 17 15 13 21 21 C 1.47582 * 91.05137 * 24.54803 * 12 11 7 22 22 S 1.65599 * 120.00249 * 180.02562 * 2 1 3 23 23 C 1.81403 * 104.44725 * 269.99712 * 22 2 1 24 24 O 1.42093 * 104.27710 * 26.07241 * 22 2 1 25 25 O 1.42101 * 104.27680 * 153.93084 * 22 2 1 26 26 H 1.08999 * 109.46974 * 89.99752 * 1 2 3 27 27 H 1.08997 * 109.46825 * 209.99767 * 1 2 3 28 28 H 1.08999 * 109.47253 * 330.00297 * 1 2 3 29 29 H 1.09002 * 109.46742 * 325.00464 * 3 2 1 30 30 H 1.08998 * 109.47363 * 204.99776 * 3 2 1 31 31 H 0.96998 * 119.99383 * 355.27248 * 6 4 3 32 32 H 1.08999 * 109.47526 * 63.99858 * 8 7 6 33 33 H 1.08996 * 109.46936 * 184.00686 * 8 7 6 34 34 H 1.08992 * 109.47424 * 295.20945 * 9 8 7 35 35 H 1.09004 * 109.47159 * 55.21545 * 9 8 7 36 36 H 0.96706 * 113.99614 * 179.97438 * 10 9 8 37 37 H 1.09002 * 113.76865 * 336.35009 * 11 7 6 38 38 H 1.08996 * 113.76929 * 107.74611 * 11 7 6 39 39 H 0.96994 * 119.99783 * 180.02562 * 16 15 13 40 40 H 1.08996 * 113.76470 * 221.15346 * 21 12 11 41 41 H 1.09000 * 113.86613 * 89.77118 * 21 12 11 42 42 H 1.09004 * 109.46564 * 60.00302 * 23 22 2 43 43 H 1.08998 * 109.47017 * 179.97438 * 23 22 2 44 44 H 1.08992 * 109.47455 * 300.00329 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7657 1.4154 5 8 1.8781 1.1232 2.3337 6 7 2.9857 2.9238 1.6608 7 6 3.0411 3.4565 3.0244 8 6 1.6559 3.6772 3.6354 9 6 0.8376 4.5955 2.7254 10 8 -0.4914 4.7121 3.2374 11 6 3.9868 4.6610 3.1814 12 7 4.4199 4.0259 4.4439 13 6 4.9752 4.4864 5.6078 14 1 5.2040 3.7967 6.4068 15 6 5.2438 5.8397 5.7609 16 7 4.9653 6.6802 4.7870 17 14 6.0019 6.4677 7.3485 18 1 7.4823 6.4405 7.2348 19 1 5.5498 7.8605 7.5957 20 1 5.5760 5.6014 8.4769 21 6 4.0117 2.6974 3.9473 22 16 2.2930 -1.4341 -0.0006 23 6 2.5194 -1.8268 1.7559 24 8 1.3971 -2.3558 -0.6063 25 8 3.5395 -1.1187 -0.6057 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6500 2.0044 -0.5894 30 1 3.1858 1.1179 -0.4343 31 1 3.4161 3.4025 0.9352 32 1 1.1466 2.7188 3.7370 33 1 1.7611 4.1386 4.6172 34 1 1.3018 5.5811 2.6917 35 1 0.8041 4.1751 1.7202 36 1 -1.0678 5.2815 2.7093 37 1 4.7680 4.7080 2.4227 38 1 3.4697 5.6103 3.3206 39 1 5.1534 7.6257 4.8939 40 1 3.5145 2.0820 4.6970 41 1 4.7992 2.1649 3.4140 42 1 1.5452 -1.9196 2.2358 43 1 3.0620 -2.7673 1.8509 44 1 3.0866 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282518409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:27 Heat of formation + Delta-G solvation = -116.468352 kcal Electronic energy + Delta-G solvation = -28681.834648 eV Core-core repulsion = 24569.941324 eV Total energy + Delta-G solvation = -4111.893324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.46335 -39.52094 -38.24096 -37.66590 -37.12663 -36.59455 -35.19581 -33.77511 -31.93772 -30.26063 -29.69223 -28.82612 -26.81799 -26.24304 -24.85319 -23.30718 -21.81018 -20.19678 -19.84974 -18.79654 -18.73141 -18.40624 -18.25702 -17.41929 -17.14867 -16.97263 -16.65237 -16.20881 -15.85054 -15.56882 -15.48472 -15.11345 -15.01294 -14.40412 -14.24368 -14.09393 -13.94942 -13.74563 -13.58482 -13.41812 -13.30196 -13.20557 -13.14260 -12.89773 -12.79458 -12.57416 -12.54908 -12.43348 -12.21419 -12.04443 -12.02799 -11.72746 -11.42863 -11.07701 -10.90078 -10.74622 -9.96651 -9.88480 -8.94394 -7.93062 -5.25225 -0.70977 1.46159 1.47059 1.52315 1.55709 1.69922 2.21754 2.50478 2.86571 3.14992 3.17957 3.27648 3.41050 3.66228 3.68584 3.91183 4.09906 4.14625 4.17511 4.30395 4.39003 4.42391 4.51382 4.53552 4.74666 4.75414 4.79501 4.87598 4.93652 5.02683 5.06022 5.09932 5.18122 5.22565 5.26086 5.45450 5.49843 5.76424 5.91187 6.70224 6.91246 6.93828 7.36210 7.57799 8.50949 9.23662 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.003225 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.794352 B = 8680.648916 C = 9549.597819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.984 5.984 3 C 0.098 3.902 4 C 0.485 3.515 5 O -0.555 6.555 6 N -0.705 5.705 7 C 0.159 3.841 8 C -0.089 4.089 9 C 0.093 3.907 10 O -0.593 6.593 11 C 0.169 3.831 12 N -0.633 5.633 13 C -0.237 4.237 14 H 0.078 0.922 15 C -0.056 4.056 16 N -0.946 5.946 17 Si 0.974 3.026 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.273 1.273 21 C 0.121 3.879 22 S 2.626 3.374 23 C -0.655 4.655 24 O -0.983 6.983 25 O -0.985 6.985 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.134 0.866 31 H 0.417 0.583 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.251 0.749 40 H 0.040 0.960 41 H 0.045 0.955 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 -10.408 -13.729 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.820 5.820 3 C -0.031 4.031 4 C 0.271 3.729 5 O -0.433 6.433 6 N -0.359 5.359 7 C 0.071 3.929 8 C -0.127 4.127 9 C 0.015 3.985 10 O -0.401 6.401 11 C 0.043 3.957 12 N -0.360 5.360 13 C -0.365 4.365 14 H 0.096 0.904 15 C -0.250 4.250 16 N -0.594 5.594 17 Si 0.803 3.197 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.198 1.198 21 C -0.006 4.006 22 S 2.721 3.279 23 C -0.807 4.807 24 O -0.973 6.973 25 O -0.976 6.976 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.168 0.832 30 H 0.152 0.848 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.629 -11.508 -13.197 19.983 hybrid contribution 0.722 1.339 1.211 1.944 sum -8.907 -10.169 -11.985 18.067 Atomic orbital electron populations 1.21607 0.76703 1.03878 1.02905 1.56983 1.16074 1.19759 1.89169 1.21481 1.01367 0.87709 0.92568 1.21946 0.77303 0.80666 0.93022 1.90673 1.48912 1.56654 1.47086 1.45988 1.55883 1.24277 1.09723 1.22136 0.93806 0.95036 0.81881 1.21177 0.92925 1.00214 0.98429 1.21952 0.82085 0.98109 0.96313 1.86441 1.23309 1.73214 1.57175 1.22491 0.92238 0.94480 0.86459 1.45980 1.73448 1.03769 1.12775 1.19291 1.33518 0.92096 0.91590 0.90432 1.25494 1.02459 0.95942 1.01105 1.69928 1.53938 1.02347 1.33192 0.85146 0.77942 0.77240 0.79395 1.21274 1.21788 1.19841 1.22971 0.94110 0.88970 0.94513 1.04304 0.72809 0.72870 0.77916 1.30386 1.12863 1.12409 1.25070 1.93563 1.65226 1.63306 1.75223 1.93550 1.45241 1.83383 1.75426 0.90888 0.90893 0.90339 0.83158 0.84850 0.74548 0.90820 0.93624 0.94104 0.91570 0.75455 0.94655 0.92555 0.94037 0.94199 0.93742 0.84424 0.84140 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 10.20 127.77 1.30 2.59 16 2 N -0.98 -16.25 2.61 -543.23 -1.42 -17.66 16 3 C 0.10 1.42 6.12 85.63 0.52 1.94 16 4 C 0.49 10.67 7.49 87.65 0.66 11.32 16 5 O -0.56 -15.61 13.20 -3.02 -0.04 -15.65 16 6 N -0.70 -16.50 4.52 -427.57 -1.93 -18.43 16 7 C 0.16 5.43 0.68 5.36 0.00 5.43 16 8 C -0.09 -3.16 4.68 30.60 0.14 -3.02 16 9 C 0.09 2.64 6.86 71.98 0.49 3.13 16 10 O -0.59 -16.56 13.66 -148.98 -2.03 -18.60 16 11 C 0.17 7.21 6.69 86.44 0.58 7.79 16 12 N -0.63 -31.48 3.55 -715.53 -2.54 -34.02 16 13 C -0.24 -13.13 10.70 84.03 0.90 -12.24 16 14 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 15 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 16 N -0.95 -54.29 11.39 21.65 0.25 -54.04 16 17 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.12 4.92 8.02 86.49 0.69 5.62 16 22 S 2.63 50.99 6.02 -56.49 -0.34 50.65 16 23 C -0.66 -11.13 10.52 113.37 1.19 -9.94 16 24 O -0.98 -23.78 17.09 -127.65 -2.18 -25.96 16 25 O -0.99 -24.23 16.53 -127.65 -2.11 -26.34 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 28 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 29 H 0.15 1.10 8.11 -2.39 -0.02 1.08 16 30 H 0.13 1.77 6.82 -2.39 -0.02 1.75 16 31 H 0.42 7.15 8.67 -92.71 -0.80 6.34 16 32 H 0.07 2.72 6.56 -2.39 -0.02 2.70 16 33 H 0.04 2.00 8.02 -2.39 -0.02 1.98 16 34 H 0.04 1.23 7.60 -2.39 -0.02 1.21 16 35 H 0.07 1.48 7.46 -2.38 -0.02 1.46 16 36 H 0.40 6.58 9.12 -74.05 -0.68 5.90 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 2.70 6.58 -2.39 -0.02 2.69 16 39 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 40 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.12 2.51 7.22 -2.39 -0.02 2.49 16 Total: -1.00 -79.20 373.86 -3.81 -83.01 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.45 Total: 20.00 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.96 Total: 9.98 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -5.64 Total: -124.16 kcal Atomic # 8 Polarization: -80.18 SS G_CDS: -6.37 Total: -86.54 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -0.34 Total: 50.65 kcal Total: -79.20 -3.81 -83.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282518409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.462 kcal (2) G-P(sol) polarization free energy of solvation -79.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds