Wall clock time and date at job start Tue Mar 31 2020 18:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 119.99827 * 2 1 4 4 C 1.53001 * 109.46787 * 269.99918 * 3 2 1 5 5 H 1.09001 * 109.47349 * 59.99702 * 4 3 2 6 6 O 1.42909 * 109.47241 * 299.99882 * 4 3 2 7 7 C 1.52998 * 109.47191 * 180.02562 * 4 3 2 8 8 N 1.46504 * 109.47279 * 184.99889 * 7 4 3 9 9 C 1.36939 * 120.00073 * 179.71904 * 8 7 4 10 10 H 1.08001 * 119.99727 * 0.27790 * 9 8 7 11 11 C 1.38809 * 120.00047 * 180.27704 * 9 8 7 12 12 N 1.31626 * 119.99977 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00044 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47111 * 89.99859 * 13 11 9 15 15 H 1.48501 * 109.47391 * 209.99679 * 13 11 9 16 16 H 1.48497 * 109.47478 * 330.00266 * 13 11 9 17 17 C 1.34777 * 120.00126 * 179.97438 * 2 1 3 18 18 O 1.21599 * 120.00045 * 175.56440 * 17 2 1 19 19 C 1.47513 * 119.99880 * 355.56471 * 17 2 1 20 20 C 1.40092 * 119.93321 * 221.47484 * 19 17 2 21 21 C 1.36299 * 120.38786 * 179.74606 * 20 19 17 22 22 C 1.39859 * 120.03832 * 0.54296 * 21 20 19 23 23 N 1.35812 * 133.51495 * 179.75655 * 22 21 20 24 24 C 1.30789 * 108.79566 * 179.97438 * 23 22 21 25 25 O 1.35095 * 124.92108 * 180.02562 * 24 23 22 26 26 O 1.34318 * 110.15471 * 359.97438 * 24 23 22 27 27 C 1.35312 * 108.13246 * 0.02562 * 26 24 23 28 28 C 1.38097 * 133.76620 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47215 * 95.15932 * 1 2 3 30 30 H 1.09007 * 109.46825 * 215.16133 * 1 2 3 31 31 H 1.09000 * 109.47237 * 335.15378 * 1 2 3 32 32 H 1.09003 * 109.46980 * 150.00283 * 3 2 1 33 33 H 1.08990 * 109.47468 * 29.99885 * 3 2 1 34 34 H 0.96696 * 114.00223 * 300.00136 * 6 4 3 35 35 H 1.09000 * 109.47370 * 65.00030 * 7 4 3 36 36 H 1.08995 * 109.46869 * 304.99737 * 7 4 3 37 37 H 0.97000 * 119.99911 * 359.97438 * 8 7 4 38 38 H 0.96999 * 119.99735 * 180.02562 * 12 11 9 39 39 H 1.07997 * 119.80801 * 359.97438 * 20 19 17 40 40 H 1.07997 * 119.98085 * 180.28037 * 21 20 19 41 41 H 0.96709 * 114.00222 * 359.96916 * 25 24 23 42 42 H 1.07996 * 120.18480 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5000 1.8406 -1.9564 6 8 3.2248 0.7144 -2.1162 7 6 3.2179 3.0351 -1.4426 8 7 3.3578 3.5182 -2.8187 9 6 4.0075 4.6977 -3.0675 10 1 4.4207 5.2695 -2.2498 11 6 4.1351 5.1582 -4.3707 12 7 3.6311 4.4615 -5.3673 13 14 5.0219 6.7668 -4.7102 14 1 6.4665 6.4994 -4.9269 15 1 4.4486 7.4016 -5.9241 16 1 4.8560 7.6782 -3.5496 17 6 2.1389 -1.1672 0.0005 18 8 3.3521 -1.1688 -0.0809 19 6 1.4046 -2.4427 0.0999 20 6 1.8971 -3.4713 0.9136 21 6 1.2235 -4.6517 1.0163 22 6 0.0391 -4.8466 0.2984 23 7 -0.8306 -5.8844 0.1932 24 6 -1.7937 -5.5459 -0.6244 25 8 -2.8351 -6.3373 -0.9624 26 8 -1.5979 -4.2970 -1.0783 27 6 -0.4586 -3.8214 -0.5243 28 6 0.2234 -2.6245 -0.6213 29 1 -0.3633 -0.0924 -1.0235 30 1 -0.3633 -0.8402 0.5919 31 1 -0.3634 0.9325 0.4318 32 1 3.1499 1.1384 0.5138 33 1 1.6084 2.0284 0.5138 34 1 4.0872 0.5460 -1.7127 35 1 4.2062 2.8837 -1.0085 36 1 2.6709 3.7708 -0.8532 37 1 2.9871 3.0044 -3.5531 38 1 3.7206 4.7832 -6.2780 39 1 2.8140 -3.3267 1.4657 40 1 1.6067 -5.4385 1.6491 41 1 -2.8201 -7.2081 -0.5420 42 1 -0.1549 -1.8335 -1.2517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284476308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:00 Heat of formation + Delta-G solvation = -81.343326 kcal Electronic energy + Delta-G solvation = -28134.685686 eV Core-core repulsion = 23888.871546 eV Total energy + Delta-G solvation = -4245.814140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.48639 -41.40160 -39.51348 -38.91277 -38.21749 -36.55021 -35.92007 -35.63000 -33.21911 -32.23852 -31.25610 -30.25336 -28.06605 -27.07513 -25.25444 -24.98120 -23.96614 -23.22207 -22.63262 -21.12385 -20.05885 -19.41332 -19.22584 -18.44463 -18.36253 -18.09760 -17.53876 -17.06730 -16.56774 -16.40467 -16.15568 -15.84175 -15.59176 -15.24907 -15.05756 -14.88960 -14.76145 -14.50948 -14.14970 -13.91097 -13.75227 -13.71164 -13.60790 -13.26794 -12.95704 -12.77670 -12.69840 -12.60317 -12.16605 -12.10022 -12.02737 -11.81846 -11.73541 -11.20526 -10.98148 -10.91092 -10.05480 -9.62948 -9.39316 -9.00959 -7.94645 -5.24483 -0.67758 0.02317 0.46643 1.03840 1.46512 1.49403 1.57614 1.70521 1.90397 2.32290 2.51134 2.56326 3.19641 3.34404 3.37892 3.55167 3.69766 3.80604 3.86403 3.90172 4.08154 4.17657 4.21333 4.29569 4.46966 4.52529 4.55179 4.60998 4.72033 4.76000 4.80068 4.90000 4.94593 5.02909 5.11215 5.26931 5.32668 5.43352 5.48624 5.87204 6.26236 6.28418 6.50193 6.84049 7.06989 7.32426 8.09292 8.31537 9.28912 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.002113 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.300648 B =13249.827574 C =13827.949975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.599 5.599 3 C 0.096 3.904 4 C 0.094 3.906 5 H 0.089 0.911 6 O -0.567 6.567 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.081 4.081 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.265 1.265 17 C 0.564 3.436 18 O -0.557 6.557 19 C -0.117 4.117 20 C -0.056 4.056 21 C -0.072 4.072 22 C 0.060 3.940 23 N -0.536 5.536 24 C 0.464 3.536 25 O -0.404 6.404 26 O -0.211 6.211 27 C -0.022 4.022 28 C -0.045 4.045 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.377 0.623 35 H 0.023 0.977 36 H 0.043 0.957 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.464 0.536 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -22.082 18.576 32.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.330 5.330 3 C -0.027 4.027 4 C 0.033 3.967 5 H 0.107 0.893 6 O -0.373 6.373 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.273 4.273 12 N -0.622 5.622 13 Si 0.806 3.194 14 H -0.216 1.216 15 H -0.222 1.222 16 H -0.190 1.190 17 C 0.353 3.647 18 O -0.436 6.436 19 C -0.120 4.120 20 C -0.075 4.075 21 C -0.091 4.091 22 C -0.052 4.052 23 N -0.288 5.288 24 C 0.216 3.784 25 O -0.209 6.209 26 O -0.106 6.106 27 C -0.071 4.071 28 C -0.064 4.064 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.225 0.775 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.175 0.825 40 H 0.185 0.815 41 H 0.329 0.671 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.227 -22.075 18.105 31.898 hybrid contribution 0.577 0.795 -0.889 1.324 sum -13.650 -21.281 17.216 30.587 Atomic orbital electron populations 1.22392 0.77488 1.05453 1.02607 1.47662 1.08189 1.05103 1.72054 1.22179 0.99172 0.85408 0.95975 1.22447 0.94447 0.86386 0.93377 0.89278 1.86520 1.33579 1.59363 1.57866 1.21461 0.97596 0.94539 0.86797 1.42487 1.67980 1.24533 1.03476 1.19684 1.27281 0.98281 0.92532 0.90312 1.25665 1.03154 1.02829 0.95623 1.69860 1.52364 1.41221 0.98758 0.85075 0.77705 0.79268 0.77305 1.21576 1.22184 1.18990 1.18215 0.86697 0.83871 0.75930 1.90768 1.14837 1.87367 1.50651 1.19569 0.95165 0.95552 1.01753 1.20949 0.99530 0.90676 0.96392 1.20152 0.91285 0.98399 0.99243 1.19972 0.97165 0.89301 0.98778 1.71186 1.05655 1.28749 1.23221 1.22560 0.87955 0.81114 0.86814 1.84695 1.36183 1.31687 1.68349 1.84366 1.39020 1.27078 1.60111 1.19837 0.87875 0.98249 1.01112 1.20251 0.92510 0.94037 0.99594 0.91924 0.89502 0.88172 0.89697 0.86102 0.77511 0.95900 0.93936 0.79514 0.94072 0.82471 0.81520 0.67096 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 8.96 127.77 1.15 2.03 16 2 N -0.60 -12.81 2.83 -850.57 -2.40 -15.21 16 3 C 0.10 2.21 5.18 86.38 0.45 2.66 16 4 C 0.09 3.03 3.27 30.59 0.10 3.13 16 5 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 6 O -0.57 -21.67 12.00 -136.31 -1.64 -23.31 16 7 C 0.12 4.81 5.90 86.38 0.51 5.32 16 8 N -0.74 -38.94 5.55 -343.45 -1.91 -40.85 16 9 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 10 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 11 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 12 N -0.97 -61.68 13.06 21.65 0.28 -61.39 16 13 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 14 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 C 0.56 14.25 6.88 86.69 0.60 14.85 16 18 O -0.56 -17.86 15.06 8.64 0.13 -17.73 16 19 C -0.12 -2.41 5.15 -20.06 -0.10 -2.51 16 20 C -0.06 -0.96 9.56 22.27 0.21 -0.75 16 21 C -0.07 -1.13 10.03 22.21 0.22 -0.90 16 22 C 0.06 1.16 7.23 39.49 0.29 1.44 16 23 N -0.54 -9.51 11.36 -422.43 -4.80 -14.31 16 24 C 0.46 7.38 9.54 130.40 1.24 8.62 16 25 O -0.40 -3.27 13.62 -61.42 -0.84 -4.10 16 26 O -0.21 -4.25 10.79 9.39 0.10 -4.14 16 27 C -0.02 -0.44 7.40 22.80 0.17 -0.28 16 28 C -0.04 -0.86 7.62 22.56 0.17 -0.69 16 29 H 0.06 0.90 6.84 -2.39 -0.02 0.89 16 30 H 0.09 1.03 6.00 -2.38 -0.01 1.01 16 31 H 0.10 1.00 7.83 -2.39 -0.02 0.98 16 32 H 0.08 2.07 7.49 -2.39 -0.02 2.06 16 33 H 0.12 2.02 7.86 -2.39 -0.02 2.00 16 34 H 0.38 13.73 8.32 -74.06 -0.62 13.12 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.37 21.51 7.67 -92.71 -0.71 20.80 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.46 -1.51 9.06 -74.05 -0.67 -2.18 16 42 H 0.16 2.71 5.53 -2.91 -0.02 2.69 16 Total: -1.00 -81.09 360.63 -3.61 -84.71 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.88 Total: 31.90 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.31 Total: 15.41 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -8.83 Total: -131.77 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -2.24 Total: -49.29 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -81.09 -3.61 -84.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284476308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.363 kcal (2) G-P(sol) polarization free energy of solvation -81.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds