Wall clock time and date at job start Tue Mar 31 2020 19:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34230 * 117.00275 * 2 1 4 4 O 1.20829 * 119.99984 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00152 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47006 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.46996 * 180.02562 * 6 5 3 8 8 C 1.36923 * 119.99544 * 269.99978 * 7 6 5 9 9 H 1.08003 * 119.99441 * 141.19580 * 8 7 6 10 10 C 1.39018 * 120.00142 * 321.19731 * 8 7 6 11 11 N 1.31375 * 119.99981 * 341.09463 * 10 8 7 12 12 Si 1.86799 * 119.99898 * 161.09645 * 10 8 7 13 13 H 1.48502 * 109.47188 * 90.00056 * 12 10 8 14 14 H 1.48498 * 109.46970 * 209.99717 * 12 10 8 15 15 H 1.48498 * 109.47384 * 329.99810 * 12 10 8 16 16 C 1.34772 * 120.00609 * 89.99772 * 7 6 5 17 17 O 1.21603 * 119.99707 * 354.70977 * 16 7 6 18 18 C 1.47667 * 120.00511 * 174.98319 * 16 7 6 19 19 C 1.41218 * 126.17940 * 173.79283 * 18 16 7 20 20 C 1.36841 * 104.89623 * 179.97438 * 19 18 16 21 21 N 1.37839 * 107.45960 * 0.02562 * 20 19 18 22 22 N 1.28080 * 109.00919 * 359.69691 * 21 20 19 23 23 C 1.46764 * 122.99899 * 179.97438 * 21 20 19 24 24 C 1.52969 * 109.78773 * 338.48248 * 23 21 20 25 25 C 1.53286 * 110.60234 * 53.54068 * 24 23 21 26 26 C 1.46821 * 130.32640 * 180.02562 * 20 19 18 27 27 O 1.21347 * 122.52361 * 349.48883 * 26 20 19 28 28 H 1.09007 * 109.46881 * 299.99879 * 1 2 3 29 29 H 1.09000 * 109.47563 * 59.99646 * 1 2 3 30 30 H 1.08994 * 109.47635 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46859 * 60.00068 * 5 3 2 32 32 H 1.09000 * 109.47240 * 300.00229 * 5 3 2 33 33 H 1.08993 * 109.47252 * 59.99926 * 6 5 3 34 34 H 1.08995 * 109.47160 * 299.99496 * 6 5 3 35 35 H 0.97002 * 120.00089 * 184.64621 * 11 10 8 36 36 H 1.07998 * 127.55176 * 0.02562 * 19 18 16 37 37 H 1.08999 * 109.42194 * 218.37980 * 23 21 20 38 38 H 1.09008 * 109.36399 * 98.54370 * 23 21 20 39 39 H 1.09003 * 109.24837 * 293.25179 * 24 23 21 40 40 H 1.08997 * 109.21915 * 173.81501 * 24 23 21 41 41 H 1.08998 * 109.77600 * 176.56548 * 25 24 23 42 42 H 1.09002 * 109.77585 * 55.76598 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8186 -0.0023 8 6 6.1477 2.8546 1.1830 9 1 7.0784 2.3164 1.2855 10 6 5.6447 3.5838 2.2544 11 7 4.7454 4.5190 2.0480 12 14 6.2475 3.2338 3.9875 13 1 7.4273 4.0859 4.2827 14 1 5.1646 3.5343 4.9582 15 1 6.6296 1.8032 4.0993 16 6 6.1353 2.8537 -1.1699 17 8 5.5363 2.7250 -2.2203 18 6 7.5998 3.0424 -1.1735 19 6 8.4459 2.9773 -2.3023 20 6 9.7021 3.2156 -1.8146 21 7 9.5876 3.4107 -0.4549 22 7 8.3553 3.3089 -0.1211 23 6 10.7379 3.6933 0.4117 24 6 12.0248 3.2168 -0.2641 25 6 12.1477 3.8127 -1.6711 26 6 10.9948 3.2763 -2.5079 27 8 11.1337 2.9257 -3.6613 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9556 0.7809 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 3.6108 3.2363 0.8888 34 1 3.6102 3.2359 -0.8911 35 1 4.4441 5.0732 2.7849 36 1 8.1634 2.7828 -3.3264 37 1 10.6130 3.1727 1.3612 38 1 10.7994 4.7665 0.5923 39 1 12.0124 2.1291 -0.3343 40 1 12.8809 3.5284 0.3342 41 1 13.0967 3.5141 -2.1165 42 1 12.0906 4.8999 -1.6174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287989152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:26 Heat of formation + Delta-G solvation = -86.829753 kcal Electronic energy + Delta-G solvation = -29045.723202 eV Core-core repulsion = 24799.671153 eV Total energy + Delta-G solvation = -4246.052049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.57343 -41.56145 -40.40511 -39.94235 -37.66451 -36.88941 -36.71197 -33.83564 -32.90944 -32.62008 -31.10177 -29.11690 -28.68070 -26.94396 -26.03161 -24.04845 -23.73091 -22.92680 -21.73984 -21.13491 -20.05282 -19.09041 -18.54258 -17.94187 -17.76762 -17.63220 -17.54941 -17.01199 -16.46945 -16.39087 -16.06656 -15.81686 -15.62983 -15.46486 -15.14136 -14.98366 -14.71807 -14.28998 -14.16260 -13.82583 -13.74794 -13.45233 -13.21938 -13.12967 -12.91251 -12.73784 -12.69374 -12.32595 -12.13583 -12.10163 -11.96346 -11.79413 -11.68936 -11.56224 -11.12863 -10.85845 -10.66454 -10.23347 -10.00648 -9.48902 -8.26220 -6.00087 -0.07844 0.78865 1.12519 1.45435 1.47206 1.52922 1.62503 1.67747 1.72547 2.32311 2.55721 2.71320 3.04110 3.12102 3.31496 3.67077 3.79050 3.81909 3.92972 4.10710 4.22711 4.23960 4.31272 4.32007 4.37857 4.45996 4.55237 4.58135 4.59766 4.65827 4.69387 4.89536 4.93369 4.98474 5.12798 5.25501 5.28298 5.38914 5.59802 5.77191 5.91706 6.29032 6.49289 6.69364 6.93827 7.17403 7.50815 7.91999 8.77493 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003631 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.558597 B = 7710.430160 C = 9303.421611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.114 4.114 6 C 0.133 3.867 7 N -0.426 5.426 8 C -0.326 4.326 9 H 0.108 0.892 10 C 0.005 3.995 11 N -0.897 5.897 12 Si 0.982 3.018 13 H -0.265 1.265 14 H -0.287 1.287 15 H -0.256 1.256 16 C 0.526 3.474 17 O -0.628 6.628 18 C -0.031 4.031 19 C -0.129 4.129 20 C -0.099 4.099 21 N -0.261 5.261 22 N -0.198 5.198 23 C 0.099 3.901 24 C -0.118 4.118 25 C -0.153 4.153 26 C 0.433 3.567 27 O -0.479 6.479 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.272 0.728 36 H 0.156 0.844 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 -4.769 3.133 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.153 4.153 6 C 0.009 3.991 7 N -0.142 5.142 8 C -0.455 4.455 9 H 0.126 0.874 10 C -0.198 4.198 11 N -0.534 5.534 12 Si 0.805 3.195 13 H -0.190 1.190 14 H -0.213 1.213 15 H -0.179 1.179 16 C 0.316 3.684 17 O -0.516 6.516 18 C -0.186 4.186 19 C -0.158 4.158 20 C -0.222 4.222 21 N -0.056 5.056 22 N -0.038 5.038 23 C -0.018 4.018 24 C -0.155 4.155 25 C -0.190 4.190 26 C 0.310 3.690 27 O -0.353 6.353 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.174 0.826 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.173 0.827 41 H 0.147 0.853 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.988 -4.435 3.380 13.221 hybrid contribution -0.888 0.233 -0.360 0.986 sum 11.100 -4.202 3.020 12.247 Atomic orbital electron populations 1.23588 0.74728 1.05892 1.02477 1.86505 1.25190 1.32274 1.83848 1.23753 0.91958 0.81317 0.71048 1.90641 1.67803 1.37449 1.46719 1.21640 0.87006 1.00444 1.06207 1.21037 0.81488 0.93495 1.03083 1.43517 1.04884 1.60693 1.05067 1.19875 1.07871 1.30691 0.87014 0.87424 1.26295 0.96179 0.93332 1.04007 1.69960 1.31402 1.17963 1.34074 0.85095 0.77969 0.79659 0.76748 1.19038 1.21278 1.17942 1.17729 0.85270 0.81521 0.83906 1.90590 1.69429 1.58732 1.32805 1.21835 0.94603 1.11523 0.90593 1.21946 0.91072 1.03049 0.99768 1.22539 0.97705 1.14924 0.86986 1.47319 1.06043 1.46176 1.06087 1.74014 0.90083 1.13968 1.25727 1.22763 0.80196 1.05122 0.93764 1.21950 0.96591 1.02211 0.94791 1.22545 0.97051 1.04136 0.95244 1.22563 0.87337 0.72557 0.86505 1.90579 1.85796 1.39759 1.19120 0.92024 0.92162 0.84365 0.87948 0.86176 0.88193 0.94393 0.91855 0.82592 0.86203 0.86324 0.90399 0.82740 0.85309 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.69 10.56 -51.42 -0.54 -12.23 16 3 C 0.48 18.83 7.96 71.24 0.57 19.40 16 4 O -0.54 -24.37 15.73 21.96 0.35 -24.02 16 5 C -0.11 -4.77 6.14 29.85 0.18 -4.58 16 6 C 0.13 6.79 4.25 86.38 0.37 7.16 16 7 N -0.43 -22.41 2.51 -639.00 -1.60 -24.01 16 8 C -0.33 -16.48 7.73 84.09 0.65 -15.83 16 9 H 0.11 5.28 6.33 -2.91 -0.02 5.26 16 10 C 0.00 0.24 5.01 84.95 0.43 0.66 16 11 N -0.90 -48.56 11.39 21.67 0.25 -48.31 16 12 Si 0.98 38.38 29.60 68.60 2.03 40.41 16 13 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 14 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 16 C 0.53 28.22 7.63 86.73 0.66 28.88 16 17 O -0.63 -36.06 16.55 -4.04 -0.07 -36.13 16 18 C -0.03 -1.45 6.80 42.30 0.29 -1.17 16 19 C -0.13 -5.34 10.85 22.67 0.25 -5.10 16 20 C -0.10 -3.25 6.73 40.12 0.27 -2.98 16 21 N -0.26 -8.04 3.81 -334.81 -1.28 -9.31 16 22 N -0.20 -8.22 9.00 -48.16 -0.43 -8.66 16 23 C 0.10 1.61 7.16 86.32 0.62 2.23 16 24 C -0.12 -1.00 5.85 30.68 0.18 -0.83 16 25 C -0.15 -1.80 6.23 30.43 0.19 -1.61 16 26 C 0.43 11.06 7.10 28.42 0.20 11.26 16 27 O -0.48 -15.41 17.97 -3.24 -0.06 -15.47 16 28 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 29 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 4.20 8.14 -2.39 -0.02 4.18 16 32 H 0.12 4.62 8.14 -2.39 -0.02 4.60 16 33 H 0.10 5.50 5.47 -2.39 -0.01 5.49 16 34 H 0.04 2.10 7.46 -2.39 -0.02 2.08 16 35 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 36 H 0.16 6.42 8.06 -2.91 -0.02 6.39 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -80.61 363.60 5.75 -74.86 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 1.06 Total: 23.55 kcal Atomic # 6 Polarization: 33.28 SS G_CDS: 6.04 Total: 39.32 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -3.07 Total: -90.29 kcal Atomic # 8 Polarization: -87.52 SS G_CDS: -0.32 Total: -87.85 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -80.61 5.75 -74.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287989152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.973 kcal (2) G-P(sol) polarization free energy of solvation -80.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds