Wall clock time and date at job start Tue Mar 31 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00172 * 2 1 4 4 O 1.20827 * 119.99590 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00453 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47586 * 179.97438 * 5 3 2 7 7 N 1.46493 * 109.47280 * 179.97438 * 6 5 3 8 8 C 1.37095 * 120.00677 * 270.00336 * 7 6 5 9 9 H 1.08004 * 120.00266 * 144.19698 * 8 7 6 10 10 C 1.38949 * 119.99983 * 324.20610 * 8 7 6 11 11 N 1.31403 * 120.00321 * 158.16059 * 10 8 7 12 12 Si 1.86809 * 119.99658 * 338.16195 * 10 8 7 13 13 H 1.48496 * 109.47227 * 95.42443 * 12 10 8 14 14 H 1.48498 * 109.46740 * 215.42382 * 12 10 8 15 15 H 1.48502 * 109.46880 * 335.42421 * 12 10 8 16 16 C 1.34787 * 119.99845 * 90.00126 * 7 6 5 17 17 O 1.21294 * 119.99795 * 354.83799 * 16 7 6 18 18 C 1.50700 * 120.00053 * 174.82858 * 16 7 6 19 19 N 1.46495 * 109.47111 * 185.02370 * 18 16 7 20 20 C 1.34774 * 120.00155 * 185.19643 * 19 18 16 21 21 O 1.21513 * 119.99815 * 354.93470 * 20 19 18 22 22 C 1.48149 * 119.99945 * 174.92998 * 20 19 18 23 23 C 1.39817 * 120.92036 * 180.02562 * 22 20 19 24 24 C 1.38153 * 119.00325 * 179.97438 * 23 22 20 25 25 N 1.31820 * 120.89199 * 0.02562 * 24 23 22 26 26 C 1.31810 * 122.04945 * 359.95745 * 25 24 23 27 27 C 1.38142 * 120.89778 * 0.04459 * 26 25 24 28 28 H 1.09003 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47293 * 299.99845 * 1 2 3 30 30 H 1.09003 * 109.47396 * 59.99977 * 1 2 3 31 31 H 1.09012 * 109.47029 * 60.00329 * 5 3 2 32 32 H 1.08997 * 109.47794 * 300.00789 * 5 3 2 33 33 H 1.09006 * 109.46213 * 60.00229 * 6 5 3 34 34 H 1.08990 * 109.47051 * 300.00531 * 6 5 3 35 35 H 0.97005 * 120.00081 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.46710 * 65.02224 * 18 16 7 37 37 H 1.09002 * 109.46994 * 305.02374 * 18 16 7 38 38 H 0.97005 * 119.99641 * 5.19972 * 19 18 16 39 39 H 1.08003 * 120.50105 * 359.70239 * 23 22 20 40 40 H 1.07995 * 119.55543 * 179.97438 * 24 23 22 41 41 H 1.08001 * 119.54822 * 180.02562 * 26 25 24 42 42 H 1.08005 * 120.49935 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4630 2.8188 0.0010 8 6 6.1467 2.8556 1.1887 9 1 7.1010 2.3577 1.2782 10 6 5.6118 3.5331 2.2776 11 7 6.0056 3.2348 3.4952 12 14 4.3328 4.8682 2.0103 13 1 2.9738 4.2899 2.1647 14 1 4.5279 5.9479 3.0110 15 1 4.4800 5.4281 0.6428 16 6 6.1370 2.8532 -1.1658 17 8 5.5408 2.7265 -2.2144 18 6 7.6312 3.0493 -1.1674 19 7 8.1064 3.1698 -2.5478 20 6 9.4278 3.2471 -2.8013 21 8 10.2201 3.3098 -1.8822 22 6 9.9144 3.2557 -4.2006 23 6 11.2809 3.3348 -4.4856 24 6 11.6908 3.3394 -5.8049 25 7 10.8136 3.2710 -6.7865 26 6 9.5170 3.1949 -6.5617 27 6 9.0199 3.1846 -5.2729 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9564 0.7806 -0.8893 32 1 3.9557 0.7809 0.8907 33 1 3.6100 3.2367 0.8894 34 1 3.6107 3.2357 -0.8905 35 1 5.6325 3.7081 4.2553 36 1 8.1103 2.1937 -0.6915 37 1 7.8791 3.9571 -0.6172 38 1 7.4699 3.1940 -3.2795 39 1 12.0049 3.3959 -3.6865 40 1 12.7442 3.4006 -6.0353 41 1 8.8340 3.1403 -7.3966 42 1 7.9562 3.1225 -5.0961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001302618151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:30 Heat of formation + Delta-G solvation = -102.618324 kcal Electronic energy + Delta-G solvation = -28129.480650 eV Core-core repulsion = 23882.743957 eV Total energy + Delta-G solvation = -4246.736693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64997 -40.31105 -39.41706 -38.57780 -36.45533 -35.49978 -34.23685 -32.79282 -32.43700 -31.44968 -31.19323 -28.19988 -27.29797 -25.14572 -24.74023 -23.74624 -23.29003 -20.72426 -20.50279 -19.54157 -18.55924 -17.67664 -16.89578 -16.66442 -16.57667 -16.45785 -16.07822 -15.79167 -15.53969 -15.41031 -15.21033 -14.69779 -14.41738 -14.01515 -13.95202 -13.77963 -13.76452 -13.35820 -13.06007 -12.81765 -12.62633 -12.57410 -12.05146 -11.89301 -11.81660 -11.77421 -11.23726 -10.97696 -10.72249 -10.38383 -10.30333 -10.26707 -10.04952 -9.99880 -9.64564 -9.45458 -9.40519 -8.98047 -8.87153 -8.16698 -6.69998 -4.32976 0.58223 0.89261 2.42447 2.80187 2.89874 2.94574 3.10382 3.14100 3.18835 3.40391 3.72865 3.95433 4.15849 4.21758 4.51013 4.65089 4.72007 4.81348 4.89887 5.03590 5.11054 5.17434 5.31773 5.39592 5.42019 5.53674 5.55239 5.60770 5.67058 5.89459 5.92317 5.96756 6.12627 6.16071 6.35235 6.38474 6.50326 6.54520 7.01901 7.61004 7.68980 7.78648 7.92701 7.99202 8.23648 8.65433 9.02287 9.31976 10.39042 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002927 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.177485 B = 9564.825015 C =11151.588655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.115 3.885 7 N -0.449 5.449 8 C -0.363 4.363 9 H 0.113 0.887 10 C 0.075 3.925 11 N -0.843 5.843 12 Si 0.870 3.130 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.260 1.260 16 C 0.469 3.531 17 O -0.598 6.598 18 C 0.119 3.881 19 N -0.705 5.705 20 C 0.553 3.447 21 O -0.531 6.531 22 C -0.080 4.080 23 C -0.117 4.117 24 C 0.092 3.908 25 N -0.474 5.474 26 C 0.094 3.906 27 C -0.140 4.140 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.279 0.721 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.408 0.592 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -3.193 -11.624 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.399 6.399 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.168 5.168 8 C -0.489 4.489 9 H 0.130 0.870 10 C -0.135 4.135 11 N -0.477 5.477 12 Si 0.697 3.303 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.184 1.184 16 C 0.258 3.742 17 O -0.485 6.485 18 C -0.006 4.006 19 N -0.359 5.359 20 C 0.338 3.662 21 O -0.408 6.408 22 C -0.092 4.092 23 C -0.137 4.137 24 C -0.064 4.064 25 N -0.184 5.184 26 C -0.062 4.062 27 C -0.161 4.161 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.246 0.754 39 H 0.167 0.833 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.511 -2.896 -12.037 12.391 hybrid contribution -1.593 0.695 0.871 1.944 sum -1.082 -2.201 -11.166 11.432 Atomic orbital electron populations 1.23212 0.76997 1.03309 1.02412 1.86534 1.23000 1.33918 1.84372 1.23983 0.92293 0.81060 0.71606 1.90649 1.67388 1.36347 1.45532 1.21771 0.86224 1.01497 1.06632 1.21464 0.82691 0.93575 1.03140 1.43626 1.03940 1.63422 1.05848 1.19173 1.07509 1.35991 0.86221 0.86982 1.25319 0.97149 0.96346 0.94684 1.69743 1.41898 1.37824 0.98193 0.87043 0.81403 0.82377 0.79448 1.19372 1.21108 1.18407 1.20210 0.89242 0.81036 0.83664 1.90542 1.70053 1.56349 1.31526 1.20961 0.92831 1.04880 0.81964 1.45718 1.06770 1.73105 1.10290 1.18098 0.82529 0.77531 0.88020 1.90796 1.55079 1.49386 1.45529 1.20461 0.94683 1.00356 0.93665 1.22345 0.95428 0.97127 0.98826 1.22801 0.99793 0.95868 0.87981 1.67557 1.03342 1.10346 1.37123 1.22758 0.91922 0.95641 0.95898 1.22482 1.01210 0.98922 0.93473 0.88360 0.92043 0.92084 0.87317 0.86529 0.90514 0.90025 0.91019 0.88520 0.88080 0.75360 0.83344 0.82064 0.82094 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.42 10.56 -39.26 -0.41 -5.83 16 3 C 0.47 8.19 7.96 36.00 0.29 8.48 16 4 O -0.51 -10.19 15.73 -18.75 -0.29 -10.48 16 5 C -0.12 -2.18 6.13 -27.88 -0.17 -2.35 16 6 C 0.11 2.39 3.47 -4.04 -0.01 2.38 16 7 N -0.45 -9.74 2.21 -114.81 -0.25 -9.99 16 8 C -0.36 -8.57 9.03 -14.93 -0.13 -8.70 16 9 H 0.11 2.75 7.33 -52.48 -0.38 2.37 16 10 C 0.08 1.85 5.32 -17.47 -0.09 1.76 16 11 N -0.84 -21.80 13.96 55.50 0.77 -21.02 16 12 Si 0.87 19.68 24.92 -169.99 -4.24 15.44 16 13 H -0.27 -6.05 6.68 56.52 0.38 -5.68 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 16 C 0.47 9.58 7.68 -10.98 -0.08 9.50 16 17 O -0.60 -12.62 15.33 5.55 0.09 -12.54 16 18 C 0.12 2.19 4.86 -5.20 -0.03 2.17 16 19 N -0.70 -11.22 5.46 -62.34 -0.34 -11.56 16 20 C 0.55 8.75 7.79 -12.19 -0.10 8.65 16 21 O -0.53 -10.03 16.45 5.35 0.09 -9.94 16 22 C -0.08 -1.03 5.91 -104.65 -0.62 -1.65 16 23 C -0.12 -1.32 9.68 -39.02 -0.38 -1.70 16 24 C 0.09 0.92 11.17 -17.59 -0.20 0.72 16 25 N -0.47 -5.27 10.34 -13.31 -0.14 -5.40 16 26 C 0.09 0.94 11.17 -17.60 -0.20 0.74 16 27 C -0.14 -1.50 9.61 -39.03 -0.38 -1.88 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.11 1.82 8.14 -51.92 -0.42 1.40 16 32 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 33 H 0.08 1.71 2.95 -51.93 -0.15 1.56 16 34 H 0.08 1.73 7.46 -51.93 -0.39 1.34 16 35 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.10 1.78 7.77 -51.93 -0.40 1.38 16 37 H 0.10 1.93 8.04 -51.93 -0.42 1.52 16 38 H 0.41 5.97 5.64 -40.82 -0.23 5.74 16 39 H 0.15 1.59 7.74 -52.48 -0.41 1.18 16 40 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.14 1.32 6.55 -52.48 -0.34 0.98 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -30.60 364.82 -5.11 -35.71 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.84 Total: 10.56 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: -1.03 Total: 19.57 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.04 Total: -47.98 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.54 Total: -38.79 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.24 Total: 15.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.60 -5.11 -35.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302618151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.913 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds