Wall clock time and date at job start Tue Mar 31 2020 19:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00172 * 2 1 4 4 O 1.20827 * 119.99590 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00453 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47586 * 179.97438 * 5 3 2 7 7 N 1.46493 * 109.47280 * 179.97438 * 6 5 3 8 8 C 1.37095 * 120.00677 * 270.00336 * 7 6 5 9 9 H 1.08004 * 120.00266 * 144.19698 * 8 7 6 10 10 C 1.38949 * 119.99983 * 324.20610 * 8 7 6 11 11 N 1.31403 * 120.00321 * 158.16059 * 10 8 7 12 12 Si 1.86809 * 119.99658 * 338.16195 * 10 8 7 13 13 H 1.48496 * 109.47227 * 95.42443 * 12 10 8 14 14 H 1.48498 * 109.46740 * 215.42382 * 12 10 8 15 15 H 1.48502 * 109.46880 * 335.42421 * 12 10 8 16 16 C 1.34787 * 119.99845 * 90.00126 * 7 6 5 17 17 O 1.21294 * 119.99795 * 354.83799 * 16 7 6 18 18 C 1.50700 * 120.00053 * 174.82858 * 16 7 6 19 19 N 1.46495 * 109.47111 * 185.02370 * 18 16 7 20 20 C 1.34774 * 120.00155 * 185.19643 * 19 18 16 21 21 O 1.21513 * 119.99815 * 354.93470 * 20 19 18 22 22 C 1.48149 * 119.99945 * 174.92998 * 20 19 18 23 23 C 1.39817 * 120.92036 * 180.02562 * 22 20 19 24 24 C 1.38153 * 119.00325 * 179.97438 * 23 22 20 25 25 N 1.31820 * 120.89199 * 0.02562 * 24 23 22 26 26 C 1.31810 * 122.04945 * 359.95745 * 25 24 23 27 27 C 1.38142 * 120.89778 * 0.04459 * 26 25 24 28 28 H 1.09003 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47293 * 299.99845 * 1 2 3 30 30 H 1.09003 * 109.47396 * 59.99977 * 1 2 3 31 31 H 1.09012 * 109.47029 * 60.00329 * 5 3 2 32 32 H 1.08997 * 109.47794 * 300.00789 * 5 3 2 33 33 H 1.09006 * 109.46213 * 60.00229 * 6 5 3 34 34 H 1.08990 * 109.47051 * 300.00531 * 6 5 3 35 35 H 0.97005 * 120.00081 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.46710 * 65.02224 * 18 16 7 37 37 H 1.09002 * 109.46994 * 305.02374 * 18 16 7 38 38 H 0.97005 * 119.99641 * 5.19972 * 19 18 16 39 39 H 1.08003 * 120.50105 * 359.70239 * 23 22 20 40 40 H 1.07995 * 119.55543 * 179.97438 * 24 23 22 41 41 H 1.08001 * 119.54822 * 180.02562 * 26 25 24 42 42 H 1.08005 * 120.49935 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4630 2.8188 0.0010 8 6 6.1467 2.8556 1.1887 9 1 7.1010 2.3577 1.2782 10 6 5.6118 3.5331 2.2776 11 7 6.0056 3.2348 3.4952 12 14 4.3328 4.8682 2.0103 13 1 2.9738 4.2899 2.1647 14 1 4.5279 5.9479 3.0110 15 1 4.4800 5.4281 0.6428 16 6 6.1370 2.8532 -1.1658 17 8 5.5408 2.7265 -2.2144 18 6 7.6312 3.0493 -1.1674 19 7 8.1064 3.1698 -2.5478 20 6 9.4278 3.2471 -2.8013 21 8 10.2201 3.3098 -1.8822 22 6 9.9144 3.2557 -4.2006 23 6 11.2809 3.3348 -4.4856 24 6 11.6908 3.3394 -5.8049 25 7 10.8136 3.2710 -6.7865 26 6 9.5170 3.1949 -6.5617 27 6 9.0199 3.1846 -5.2729 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9564 0.7806 -0.8893 32 1 3.9557 0.7809 0.8907 33 1 3.6100 3.2367 0.8894 34 1 3.6107 3.2357 -0.8905 35 1 5.6325 3.7081 4.2553 36 1 8.1103 2.1937 -0.6915 37 1 7.8791 3.9571 -0.6172 38 1 7.4699 3.1940 -3.2795 39 1 12.0049 3.3959 -3.6865 40 1 12.7442 3.4006 -6.0353 41 1 8.8340 3.1403 -7.3966 42 1 7.9562 3.1225 -5.0961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001302618151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:29 Heat of formation + Delta-G solvation = -123.400554 kcal Electronic energy + Delta-G solvation = -28130.381835 eV Core-core repulsion = 23882.743957 eV Total energy + Delta-G solvation = -4247.637878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78725 -41.59765 -40.84633 -39.88981 -37.80061 -37.14472 -35.66952 -34.27815 -33.74644 -32.80564 -32.21221 -29.49603 -28.48575 -26.94540 -25.93109 -24.90771 -24.27912 -22.01490 -21.77089 -21.20733 -19.90279 -19.09682 -18.35695 -18.12392 -17.89556 -17.69141 -17.43617 -16.92741 -16.83443 -16.65401 -16.40197 -16.10634 -15.84758 -15.46360 -15.19482 -14.85625 -14.78480 -14.58715 -14.51516 -14.38081 -14.08157 -14.04712 -13.55040 -13.41407 -13.04431 -12.91716 -12.73030 -12.67040 -12.17031 -11.88472 -11.80076 -11.67016 -11.51021 -11.22280 -11.00819 -10.71382 -10.54396 -10.29045 -10.19093 -9.96457 -8.60940 -6.23189 -0.36813 0.10325 1.05045 1.15184 1.29308 1.36185 1.50445 1.63979 1.75085 1.90047 2.10066 2.60220 2.84781 2.85960 3.45618 3.51974 3.66538 3.77707 3.82146 3.95157 3.98319 4.03822 4.07143 4.28331 4.29855 4.37957 4.42080 4.53685 4.57613 4.61275 4.66865 4.79876 4.81197 4.82645 5.05575 5.12886 5.24403 5.26048 5.61344 5.95514 6.10521 6.35700 6.60809 6.81013 6.89319 6.97291 7.22524 7.53993 8.51945 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002927 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.177485 B = 9564.825015 C =11151.588655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.116 4.116 6 C 0.113 3.887 7 N -0.459 5.459 8 C -0.351 4.351 9 H 0.099 0.901 10 C 0.046 3.954 11 N -0.879 5.879 12 Si 0.911 3.089 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.265 1.265 16 C 0.476 3.524 17 O -0.600 6.600 18 C 0.127 3.873 19 N -0.700 5.700 20 C 0.555 3.445 21 O -0.567 6.567 22 C -0.100 4.100 23 C -0.122 4.122 24 C 0.098 3.902 25 N -0.487 5.487 26 C 0.097 3.903 27 C -0.137 4.137 28 H 0.137 0.863 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.282 0.718 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.416 0.584 39 H 0.149 0.851 40 H 0.193 0.807 41 H 0.192 0.808 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -3.809 -13.746 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.154 4.154 6 C -0.010 4.010 7 N -0.179 5.179 8 C -0.478 4.478 9 H 0.116 0.884 10 C -0.161 4.161 11 N -0.514 5.514 12 Si 0.738 3.262 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.266 3.734 17 O -0.486 6.486 18 C 0.000 4.000 19 N -0.354 5.354 20 C 0.343 3.657 21 O -0.447 6.447 22 C -0.111 4.111 23 C -0.143 4.143 24 C -0.059 4.059 25 N -0.197 5.197 26 C -0.059 4.059 27 C -0.158 4.158 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.255 0.745 39 H 0.167 0.833 40 H 0.209 0.791 41 H 0.209 0.791 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.009 -3.530 -14.195 14.627 hybrid contribution -1.456 0.817 1.394 2.175 sum -1.448 -2.713 -12.800 13.164 Atomic orbital electron populations 1.23607 0.74579 1.05960 1.02573 1.86509 1.25274 1.32204 1.83632 1.23779 0.92046 0.81393 0.70989 1.90639 1.67907 1.37401 1.47053 1.21615 0.87019 0.99456 1.07354 1.21415 0.82020 0.95504 1.02103 1.43656 1.04352 1.64355 1.05567 1.19045 1.07012 1.35033 0.86697 0.88358 1.25685 0.98403 0.97447 0.94586 1.69784 1.43636 1.39173 0.98803 0.86395 0.79994 0.80885 0.78883 1.19571 1.20929 1.18924 1.20459 0.89894 0.79873 0.83223 1.90535 1.70464 1.56081 1.31481 1.20750 0.91429 1.04326 0.83456 1.45625 1.07212 1.73214 1.09366 1.18565 0.81881 0.76172 0.89122 1.90772 1.55811 1.51079 1.47040 1.20318 0.95821 1.02822 0.92165 1.22466 0.94881 0.97271 0.99694 1.23246 1.01144 0.94457 0.87032 1.67653 1.03992 1.10562 1.37489 1.23254 0.92071 0.94243 0.96367 1.22626 1.01555 0.98342 0.93250 0.84497 0.92160 0.91738 0.86071 0.86285 0.91972 0.90507 0.90732 0.88713 0.89016 0.74452 0.83304 0.79065 0.79082 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -10.12 10.56 -51.41 -0.54 -10.66 16 3 C 0.47 16.08 7.96 71.23 0.57 16.65 16 4 O -0.54 -21.12 15.73 21.96 0.35 -20.78 16 5 C -0.12 -4.03 6.13 29.85 0.18 -3.85 16 6 C 0.11 4.66 3.47 86.38 0.30 4.96 16 7 N -0.46 -19.83 2.21 -635.53 -1.41 -21.24 16 8 C -0.35 -16.73 9.03 84.04 0.76 -15.97 16 9 H 0.10 4.93 7.33 -2.91 -0.02 4.91 16 10 C 0.05 2.27 5.32 84.93 0.45 2.72 16 11 N -0.88 -46.01 13.96 21.66 0.30 -45.71 16 12 Si 0.91 40.83 24.92 68.60 1.71 42.54 16 13 H -0.27 -12.05 6.68 99.48 0.66 -11.38 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 16 C 0.48 19.19 7.68 87.66 0.67 19.86 16 17 O -0.60 -24.54 15.33 -3.07 -0.05 -24.58 16 18 C 0.13 4.67 4.86 85.63 0.42 5.09 16 19 N -0.70 -21.94 5.46 -469.43 -2.56 -24.50 16 20 C 0.56 17.47 7.79 86.88 0.68 18.15 16 21 O -0.57 -21.76 16.45 -3.75 -0.06 -21.83 16 22 C -0.10 -2.46 5.91 -19.88 -0.12 -2.58 16 23 C -0.12 -2.63 9.68 22.63 0.22 -2.41 16 24 C 0.10 1.73 11.17 84.67 0.95 2.67 16 25 N -0.49 -9.55 10.34 -196.01 -2.03 -11.57 16 26 C 0.10 1.66 11.17 84.67 0.95 2.60 16 27 C -0.14 -2.66 9.61 22.63 0.22 -2.44 16 28 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 31 H 0.12 3.89 8.14 -2.38 -0.02 3.87 16 32 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 33 H 0.06 2.77 2.95 -2.38 -0.01 2.76 16 34 H 0.08 3.22 7.46 -2.39 -0.02 3.20 16 35 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 36 H 0.09 3.54 7.77 -2.39 -0.02 3.52 16 37 H 0.09 3.57 8.04 -2.39 -0.02 3.55 16 38 H 0.42 11.68 5.64 -92.70 -0.52 11.16 16 39 H 0.15 3.12 7.74 -2.91 -0.02 3.09 16 40 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.16 2.53 6.55 -2.91 -0.02 2.51 16 Total: -1.00 -65.27 364.82 3.66 -61.61 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.52 Total: 29.57 kcal Atomic # 6 Polarization: 39.72 SS G_CDS: 7.44 Total: 47.16 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -5.69 Total: -103.02 kcal Atomic # 8 Polarization: -77.54 SS G_CDS: -0.31 Total: -77.85 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.71 Total: 42.54 kcal Total: -65.27 3.66 -61.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302618151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.795 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds