Wall clock time and date at job start Tue Mar 31 2020 18:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00215 * 2 1 4 4 O 1.21277 * 119.99772 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00344 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46957 * 299.99977 * 5 3 2 7 7 C 1.53004 * 109.46947 * 59.99700 * 5 3 2 8 8 N 1.46500 * 109.47216 * 179.97438 * 5 3 2 9 9 C 1.34769 * 119.99948 * 155.00049 * 8 5 3 10 10 O 1.21366 * 120.00055 * 0.02562 * 9 8 5 11 11 C 1.49324 * 120.00305 * 179.97438 * 9 8 5 12 12 O 1.21389 * 119.99191 * 0.02562 * 11 9 8 13 13 N 1.34769 * 120.00305 * 179.97438 * 11 9 8 14 14 C 1.39740 * 120.00064 * 175.49858 * 13 11 9 15 15 C 1.38998 * 120.00611 * 214.86819 * 14 13 11 16 16 C 1.37973 * 119.99301 * 179.74220 * 15 14 13 17 17 C 1.38936 * 120.00407 * 0.50582 * 16 15 14 18 18 O 1.35758 * 119.99231 * 179.74528 * 17 16 15 19 19 C 1.34797 * 116.99873 * 185.37030 * 18 17 16 20 20 H 1.07998 * 120.00457 * 354.96062 * 19 18 17 21 21 C 1.38652 * 119.99842 * 174.96436 * 19 18 17 22 22 N 1.31555 * 120.00226 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99893 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47351 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46835 * 119.99993 * 23 21 19 26 26 H 1.48496 * 109.47336 * 239.99949 * 23 21 19 27 27 C 1.38937 * 120.01449 * 359.76692 * 17 16 15 28 28 C 1.37967 * 120.00883 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.46748 * 59.72839 * 1 2 3 30 30 H 1.09001 * 109.47480 * 179.72465 * 1 2 3 31 31 H 1.08999 * 109.47596 * 299.72447 * 1 2 3 32 32 H 0.97007 * 119.99859 * 180.26968 * 2 1 3 33 33 H 1.08999 * 109.46691 * 180.02562 * 7 5 3 34 34 H 1.09000 * 109.47192 * 300.00041 * 7 5 3 35 35 H 1.09000 * 109.46810 * 59.99892 * 7 5 3 36 36 H 0.97000 * 119.99811 * 335.00015 * 8 5 3 37 37 H 0.97010 * 120.00115 * 355.49592 * 13 11 9 38 38 H 1.08001 * 120.00590 * 359.97438 * 15 14 13 39 39 H 1.07990 * 119.99456 * 180.25207 * 16 15 14 40 40 H 0.97002 * 120.00132 * 180.02562 * 22 21 19 41 41 H 1.07996 * 119.99682 * 179.97438 * 27 17 16 42 42 H 1.07995 * 120.00649 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0089 0.6536 0.8908 7 6 4.1564 0.4456 -1.2483 8 7 4.1342 2.5484 -0.0002 9 6 5.3560 2.8314 0.4934 10 8 6.0518 1.9420 0.9380 11 6 5.8540 4.2392 0.4921 12 8 5.1581 5.1286 0.0470 13 7 7.0755 4.5223 0.9861 14 6 7.5800 5.8226 0.8997 15 6 8.9400 6.0287 0.7001 16 6 9.4370 7.3126 0.6095 17 6 8.5798 8.3995 0.7283 18 8 9.0699 9.6627 0.6443 19 6 8.2063 10.6709 0.8783 20 1 7.1596 10.4591 1.0394 21 6 8.6618 11.9800 0.9122 22 7 9.9367 12.2382 0.7155 23 14 7.4650 13.3773 1.2359 24 1 6.0990 12.8258 1.4227 25 1 7.8758 14.1068 2.4624 26 1 7.4690 14.3101 0.0804 27 6 7.2211 8.1938 0.9335 28 6 6.7227 6.9101 1.0188 29 1 -0.3633 0.5181 -0.8876 30 1 -0.3634 -1.0276 -0.0049 31 1 -0.3634 0.5095 0.8924 32 1 1.9500 -0.8401 -0.0040 33 1 5.2464 0.4452 -1.2476 34 1 3.7931 -0.5821 -1.2482 35 1 3.7933 0.9592 -2.1385 36 1 3.5782 3.2592 -0.3559 37 1 7.6046 3.8234 1.4018 38 1 9.6071 5.1839 0.6122 39 1 10.4931 7.4727 0.4504 40 1 10.2554 13.1541 0.7396 41 1 6.5551 9.0388 1.0262 42 1 5.6667 6.7503 1.1787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319044634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:52 Heat of formation + Delta-G solvation = -93.147647 kcal Electronic energy + Delta-G solvation = -27408.229560 eV Core-core repulsion = 23161.903547 eV Total energy + Delta-G solvation = -4246.326014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.15244 -40.27507 -39.19821 -38.38336 -36.61601 -35.65056 -35.22393 -33.98177 -32.21104 -31.41700 -30.25328 -28.35193 -27.45163 -25.81578 -25.14725 -23.69053 -22.31980 -21.36931 -20.80239 -20.30161 -19.24454 -18.07884 -17.68882 -17.26201 -16.91568 -16.55368 -16.32114 -15.82167 -15.72782 -15.27184 -14.64810 -14.49772 -14.41439 -14.11677 -13.96475 -13.64408 -13.61749 -13.50073 -12.98792 -12.94249 -12.89768 -12.77599 -12.61256 -12.18325 -11.86316 -11.77716 -11.59431 -11.39286 -11.05967 -10.74703 -10.46035 -10.42597 -9.78765 -9.75721 -9.68364 -9.65077 -9.21425 -8.74212 -8.25023 -7.00472 -6.47119 -4.04202 1.21324 1.97538 2.02339 2.15485 2.30620 2.69464 3.11530 3.15176 3.20601 3.21158 3.55648 3.96456 4.02357 4.36229 4.45909 4.54660 4.57236 4.68919 4.97188 5.00528 5.07447 5.20720 5.22994 5.28925 5.59171 5.63869 5.69624 5.75621 5.79237 6.04623 6.11720 6.25160 6.62438 6.71527 6.80587 6.87275 6.95946 7.03001 7.26396 7.39873 7.41354 7.57644 7.65597 7.70975 7.98015 8.08800 8.98684 9.67064 10.70565 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.002013 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.340661 B =13906.347439 C =15029.170785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.730 5.730 3 C 0.509 3.491 4 O -0.525 6.525 5 C 0.124 3.876 6 H 0.120 0.880 7 C -0.161 4.161 8 N -0.687 5.687 9 C 0.519 3.481 10 O -0.523 6.523 11 C 0.497 3.503 12 O -0.503 6.503 13 N -0.623 5.623 14 C 0.022 3.978 15 C -0.084 4.084 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.174 6.174 19 C -0.391 4.391 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.221 4.221 28 C -0.060 4.060 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.405 0.595 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.424 0.576 37 H 0.414 0.586 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.270 0.730 41 H 0.132 0.868 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 -26.899 -1.309 30.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.382 5.382 3 C 0.294 3.706 4 O -0.400 6.400 5 C 0.016 3.984 6 H 0.138 0.862 7 C -0.220 4.220 8 N -0.343 5.343 9 C 0.300 3.700 10 O -0.398 6.398 11 C 0.277 3.723 12 O -0.378 6.378 13 N -0.268 5.268 14 C -0.070 4.070 15 C -0.104 4.104 16 C -0.198 4.198 17 C 0.096 3.904 18 O -0.076 6.076 19 C -0.467 4.467 20 H 0.112 0.888 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.241 4.241 28 C -0.080 4.080 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.239 0.761 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.263 0.737 37 H 0.250 0.750 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.756 -25.834 -1.384 29.301 hybrid contribution -0.481 0.161 0.191 0.542 sum -14.237 -25.673 -1.194 29.381 Atomic orbital electron populations 1.21596 0.78865 1.02552 1.02737 1.45685 1.08096 1.08448 1.76012 1.20593 0.89682 0.84198 0.76132 1.90774 1.69825 1.31081 1.48328 1.20843 0.90680 0.84493 1.02417 0.86219 1.22171 1.03490 1.00058 0.96274 1.45482 1.17320 1.09639 1.61860 1.20188 0.82038 0.89622 0.78183 1.90751 1.55913 1.47931 1.45236 1.19860 0.83419 0.88620 0.80359 1.90805 1.55302 1.47042 1.44667 1.42807 1.16938 1.10834 1.56265 1.17232 0.93056 0.82343 1.14416 1.20382 0.92953 0.96430 1.00669 1.19997 0.99333 0.89882 1.10556 1.19447 0.91735 0.86544 0.92723 1.83963 1.38041 1.09995 1.75638 1.21414 0.90942 0.84092 1.50227 0.88835 1.25307 0.96966 0.97695 0.96557 1.70046 1.13455 1.20785 1.45212 0.85633 0.79468 0.79950 0.78332 1.18986 1.20120 1.20110 1.21097 0.95513 0.96957 1.10568 1.20858 0.99290 0.90924 0.96913 0.91897 0.90317 0.91929 0.76113 0.90230 0.90731 0.91320 0.73684 0.74985 0.86412 0.85837 0.92007 0.85014 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 10.70 59.84 0.64 1.00 16 2 N -0.73 -3.40 5.61 -67.08 -0.38 -3.77 16 3 C 0.51 4.22 7.22 -10.98 -0.08 4.14 16 4 O -0.52 -6.61 15.84 5.56 0.09 -6.52 16 5 C 0.12 0.95 2.99 -69.08 -0.21 0.74 16 6 H 0.12 0.83 7.58 -51.93 -0.39 0.43 16 7 C -0.16 -0.89 9.38 37.16 0.35 -0.54 16 8 N -0.69 -7.38 4.94 -55.40 -0.27 -7.65 16 9 C 0.52 6.49 7.85 -11.65 -0.09 6.40 16 10 O -0.52 -6.80 16.14 5.48 0.09 -6.71 16 11 C 0.50 7.44 7.73 -11.65 -0.09 7.35 16 12 O -0.50 -8.91 13.91 5.46 0.08 -8.83 16 13 N -0.62 -9.15 5.32 -10.27 -0.05 -9.20 16 14 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 15 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 16 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 17 C 0.15 3.61 6.65 -39.06 -0.26 3.35 16 18 O -0.17 -4.91 9.75 0.12 0.00 -4.91 16 19 C -0.39 -10.91 9.48 30.89 0.29 -10.61 16 20 H 0.09 2.44 5.19 -52.49 -0.27 2.17 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 23 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.22 -4.96 9.16 -39.42 -0.36 -5.32 16 28 C -0.06 -1.20 8.69 -39.40 -0.34 -1.55 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.40 0.59 8.24 -40.82 -0.34 0.25 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.19 7.56 -51.93 -0.39 -0.20 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.42 4.99 7.26 -40.82 -0.30 4.70 16 37 H 0.41 5.01 8.30 -40.82 -0.34 4.67 16 38 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 2.97 5.63 -52.49 -0.30 2.67 16 42 H 0.13 2.47 6.22 -52.49 -0.33 2.14 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -35.20 368.75 -5.46 -40.67 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.75 Total: 10.22 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.56 Total: -0.12 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.05 Total: -44.96 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: 0.25 Total: -26.97 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.20 -5.46 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319044634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.481 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds