Wall clock time and date at job start Tue Mar 31 2020 18:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00215 * 2 1 4 4 O 1.21277 * 119.99772 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00344 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46957 * 299.99977 * 5 3 2 7 7 C 1.53004 * 109.46947 * 59.99700 * 5 3 2 8 8 N 1.46500 * 109.47216 * 179.97438 * 5 3 2 9 9 C 1.34769 * 119.99948 * 155.00049 * 8 5 3 10 10 O 1.21366 * 120.00055 * 0.02562 * 9 8 5 11 11 C 1.49324 * 120.00305 * 179.97438 * 9 8 5 12 12 O 1.21389 * 119.99191 * 0.02562 * 11 9 8 13 13 N 1.34769 * 120.00305 * 179.97438 * 11 9 8 14 14 C 1.39740 * 120.00064 * 175.49858 * 13 11 9 15 15 C 1.38998 * 120.00611 * 214.86819 * 14 13 11 16 16 C 1.37973 * 119.99301 * 179.74220 * 15 14 13 17 17 C 1.38936 * 120.00407 * 0.50582 * 16 15 14 18 18 O 1.35758 * 119.99231 * 179.74528 * 17 16 15 19 19 C 1.34797 * 116.99873 * 185.37030 * 18 17 16 20 20 H 1.07998 * 120.00457 * 354.96062 * 19 18 17 21 21 C 1.38652 * 119.99842 * 174.96436 * 19 18 17 22 22 N 1.31555 * 120.00226 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99893 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47351 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46835 * 119.99993 * 23 21 19 26 26 H 1.48496 * 109.47336 * 239.99949 * 23 21 19 27 27 C 1.38937 * 120.01449 * 359.76692 * 17 16 15 28 28 C 1.37967 * 120.00883 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.46748 * 59.72839 * 1 2 3 30 30 H 1.09001 * 109.47480 * 179.72465 * 1 2 3 31 31 H 1.08999 * 109.47596 * 299.72447 * 1 2 3 32 32 H 0.97007 * 119.99859 * 180.26968 * 2 1 3 33 33 H 1.08999 * 109.46691 * 180.02562 * 7 5 3 34 34 H 1.09000 * 109.47192 * 300.00041 * 7 5 3 35 35 H 1.09000 * 109.46810 * 59.99892 * 7 5 3 36 36 H 0.97000 * 119.99811 * 335.00015 * 8 5 3 37 37 H 0.97010 * 120.00115 * 355.49592 * 13 11 9 38 38 H 1.08001 * 120.00590 * 359.97438 * 15 14 13 39 39 H 1.07990 * 119.99456 * 180.25207 * 16 15 14 40 40 H 0.97002 * 120.00132 * 180.02562 * 22 21 19 41 41 H 1.07996 * 119.99682 * 179.97438 * 27 17 16 42 42 H 1.07995 * 120.00649 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0089 0.6536 0.8908 7 6 4.1564 0.4456 -1.2483 8 7 4.1342 2.5484 -0.0002 9 6 5.3560 2.8314 0.4934 10 8 6.0518 1.9420 0.9380 11 6 5.8540 4.2392 0.4921 12 8 5.1581 5.1286 0.0470 13 7 7.0755 4.5223 0.9861 14 6 7.5800 5.8226 0.8997 15 6 8.9400 6.0287 0.7001 16 6 9.4370 7.3126 0.6095 17 6 8.5798 8.3995 0.7283 18 8 9.0699 9.6627 0.6443 19 6 8.2063 10.6709 0.8783 20 1 7.1596 10.4591 1.0394 21 6 8.6618 11.9800 0.9122 22 7 9.9367 12.2382 0.7155 23 14 7.4650 13.3773 1.2359 24 1 6.0990 12.8258 1.4227 25 1 7.8758 14.1068 2.4624 26 1 7.4690 14.3101 0.0804 27 6 7.2211 8.1938 0.9335 28 6 6.7227 6.9101 1.0188 29 1 -0.3633 0.5181 -0.8876 30 1 -0.3634 -1.0276 -0.0049 31 1 -0.3634 0.5095 0.8924 32 1 1.9500 -0.8401 -0.0040 33 1 5.2464 0.4452 -1.2476 34 1 3.7931 -0.5821 -1.2482 35 1 3.7933 0.9592 -2.1385 36 1 3.5782 3.2592 -0.3559 37 1 7.6046 3.8234 1.4018 38 1 9.6071 5.1839 0.6122 39 1 10.4931 7.4727 0.4504 40 1 10.2554 13.1541 0.7396 41 1 6.5551 9.0388 1.0262 42 1 5.6667 6.7503 1.1787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319044634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:51 Heat of formation + Delta-G solvation = -122.242963 kcal Electronic energy + Delta-G solvation = -27409.491228 eV Core-core repulsion = 23161.903547 eV Total energy + Delta-G solvation = -4247.587681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21798 -41.24734 -40.59724 -39.72399 -38.22960 -36.53573 -35.81065 -35.39423 -34.18188 -32.14249 -31.89341 -29.92515 -27.88385 -27.47435 -26.41737 -24.64448 -23.90176 -22.77121 -21.50741 -21.41371 -20.44691 -19.77229 -19.06682 -18.44615 -18.05584 -17.70088 -17.19617 -16.99452 -16.54692 -16.32932 -16.18981 -15.95145 -15.53058 -15.40980 -15.19199 -15.13948 -14.78304 -14.68570 -14.22530 -14.16600 -13.60933 -13.56116 -13.45373 -13.34204 -13.27433 -13.09601 -12.82705 -12.74407 -12.66206 -12.42559 -12.11396 -11.47468 -11.18728 -11.13160 -10.77842 -10.60088 -10.51775 -10.22136 -9.87995 -8.70718 -8.48259 -6.14740 0.01671 0.50827 0.65779 1.09644 1.35634 1.39596 1.42898 1.53323 1.97324 2.12317 2.17235 2.52939 2.78779 3.12074 3.27083 3.48592 3.55225 3.90658 4.01521 4.06017 4.08388 4.43720 4.44925 4.55496 4.58542 4.62362 4.63887 4.72572 4.96287 5.00405 5.04743 5.06904 5.17219 5.27275 5.30833 5.34434 5.49315 5.66385 5.79451 6.00834 6.07050 6.23407 6.37228 6.60895 6.84954 6.96724 7.07565 7.74591 8.74401 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.002013 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.340661 B =13906.347439 C =15029.170785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.710 5.710 3 C 0.508 3.492 4 O -0.576 6.576 5 C 0.122 3.878 6 H 0.133 0.867 7 C -0.156 4.156 8 N -0.683 5.683 9 C 0.529 3.471 10 O -0.524 6.524 11 C 0.498 3.502 12 O -0.531 6.531 13 N -0.615 5.615 14 C 0.049 3.951 15 C -0.068 4.068 16 C -0.178 4.178 17 C 0.113 3.887 18 O -0.224 6.224 19 C -0.414 4.414 20 H 0.099 0.901 21 C -0.020 4.020 22 N -0.915 5.915 23 Si 1.016 2.984 24 H -0.255 1.255 25 H -0.266 1.266 26 H -0.268 1.268 27 C -0.229 4.229 28 C -0.070 4.070 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.423 0.577 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.419 0.581 37 H 0.431 0.569 38 H 0.168 0.832 39 H 0.132 0.868 40 H 0.274 0.726 41 H 0.120 0.880 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -30.798 -1.184 34.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.293 3.707 4 O -0.455 6.455 5 C 0.015 3.985 6 H 0.151 0.849 7 C -0.214 4.214 8 N -0.337 5.337 9 C 0.309 3.691 10 O -0.401 6.401 11 C 0.280 3.720 12 O -0.407 6.407 13 N -0.263 5.263 14 C -0.044 4.044 15 C -0.088 4.088 16 C -0.198 4.198 17 C 0.062 3.938 18 O -0.130 6.130 19 C -0.490 4.490 20 H 0.116 0.884 21 C -0.218 4.218 22 N -0.553 5.553 23 Si 0.836 3.164 24 H -0.179 1.179 25 H -0.191 1.191 26 H -0.192 1.192 27 C -0.249 4.249 28 C -0.090 4.090 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.257 0.743 37 H 0.271 0.729 38 H 0.185 0.815 39 H 0.150 0.850 40 H 0.083 0.917 41 H 0.138 0.862 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.976 -29.891 -1.254 33.457 hybrid contribution -0.242 0.896 0.134 0.938 sum -15.218 -28.995 -1.119 32.765 Atomic orbital electron populations 1.21729 0.78262 1.04628 1.01534 1.45595 1.08519 1.08242 1.73932 1.20740 0.89912 0.84407 0.75651 1.90761 1.70688 1.32995 1.51072 1.21127 0.90350 0.82843 1.04161 0.84908 1.22174 1.02900 1.01711 0.94651 1.45573 1.16444 1.11077 1.60628 1.19545 0.82663 0.88088 0.78806 1.90760 1.56138 1.47369 1.45799 1.20390 0.82830 0.89676 0.79145 1.90807 1.56015 1.48320 1.45594 1.42726 1.17227 1.09852 1.56469 1.17357 0.93112 0.83295 1.10675 1.20793 0.93312 0.96525 0.98158 1.20321 0.99599 0.90210 1.09677 1.19975 0.93034 0.86318 0.94478 1.83932 1.38993 1.11368 1.78682 1.21825 0.91432 0.84874 1.50830 0.88352 1.26526 0.98971 1.00169 0.96095 1.70171 1.15689 1.21551 1.47920 0.84561 0.77200 0.76122 0.78540 1.17900 1.19134 1.19249 1.21093 0.94978 0.97778 1.11005 1.20937 0.99919 0.90712 0.97455 0.93019 0.86576 0.93299 0.73892 0.90999 0.87142 0.91931 0.74320 0.72925 0.81471 0.84969 0.91738 0.86223 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.70 127.77 1.37 1.87 16 2 N -0.71 -4.68 5.61 -484.53 -2.72 -7.40 16 3 C 0.51 7.53 7.22 87.66 0.63 8.16 16 4 O -0.58 -14.29 15.84 -3.02 -0.05 -14.34 16 5 C 0.12 1.57 2.99 44.25 0.13 1.70 16 6 H 0.13 1.40 7.58 -2.39 -0.02 1.38 16 7 C -0.16 -1.24 9.38 71.98 0.68 -0.57 16 8 N -0.68 -13.54 4.94 -447.56 -2.21 -15.75 16 9 C 0.53 12.01 7.85 87.23 0.68 12.70 16 10 O -0.52 -11.97 16.14 -3.30 -0.05 -12.03 16 11 C 0.50 13.91 7.73 87.23 0.67 14.59 16 12 O -0.53 -18.29 13.91 -3.37 -0.05 -18.34 16 13 N -0.62 -16.25 5.32 -304.75 -1.62 -17.87 16 14 C 0.05 1.64 6.30 38.24 0.24 1.88 16 15 C -0.07 -2.18 9.96 22.39 0.22 -1.96 16 16 C -0.18 -7.25 9.98 22.37 0.22 -7.03 16 17 C 0.11 5.63 6.65 22.60 0.15 5.78 16 18 O -0.22 -13.40 9.75 -22.50 -0.22 -13.62 16 19 C -0.41 -24.34 9.48 67.92 0.64 -23.69 16 20 H 0.10 5.42 5.19 -2.91 -0.02 5.41 16 21 C -0.02 -1.12 5.49 84.83 0.47 -0.65 16 22 N -0.92 -56.00 13.67 21.61 0.30 -55.71 16 23 Si 1.02 43.63 29.55 68.60 2.03 45.66 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 C -0.23 -10.57 9.16 22.37 0.20 -10.36 16 28 C -0.07 -2.80 8.69 22.39 0.19 -2.60 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.42 -0.43 8.24 -92.70 -0.76 -1.19 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.08 7.56 -2.39 -0.02 0.06 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.42 9.57 7.26 -92.71 -0.67 8.90 16 37 H 0.43 8.72 8.30 -92.70 -0.77 7.95 16 38 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.13 5.09 8.06 -2.92 -0.02 5.07 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.12 5.70 5.63 -2.91 -0.02 5.69 16 42 H 0.13 5.05 6.22 -2.91 -0.02 5.04 16 Total: -1.00 -82.01 368.75 0.83 -81.17 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -1.09 Total: 28.41 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 6.51 Total: -0.19 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -6.25 Total: -96.73 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -0.37 Total: -58.33 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -82.01 0.83 -81.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319044634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.071 kcal (2) G-P(sol) polarization free energy of solvation -82.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds