Wall clock time and date at job start Tue Mar 31 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39517 * 126.27976 * 2 1 4 4 C 1.38595 * 133.30084 * 359.97438 * 3 2 1 5 5 C 1.38351 * 120.15835 * 179.97438 * 4 3 2 6 6 C 1.37979 * 120.38762 * 0.02562 * 5 4 3 7 7 C 1.39637 * 120.14291 * 359.97438 * 6 5 4 8 8 C 1.47586 * 120.20504 * 180.02562 * 7 6 5 9 9 O 1.21577 * 119.99913 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99887 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99638 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46900 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47164 * 60.00014 * 12 11 10 14 14 O 1.42903 * 109.47171 * 299.99748 * 12 11 10 15 15 C 1.53003 * 109.47376 * 180.02562 * 12 11 10 16 16 N 1.46494 * 109.47283 * 185.00021 * 15 12 11 17 17 C 1.36937 * 120.00022 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00269 * 0.02562 * 17 16 15 19 19 C 1.38819 * 120.00106 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99677 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99701 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47086 * 89.99739 * 21 19 17 23 23 H 1.48503 * 109.46612 * 209.99678 * 21 19 17 24 24 H 1.48497 * 109.46986 * 329.99380 * 21 19 17 25 25 C 1.39383 * 106.57354 * 180.22316 * 3 2 1 26 26 O 1.35307 * 107.36357 * 0.16323 * 25 3 2 27 27 C 1.34266 * 109.20544 * 0.26243 * 26 25 3 28 28 O 1.21590 * 125.29254 * 180.02562 * 27 26 25 29 29 H 1.09007 * 109.46498 * 89.99734 * 1 2 3 30 30 H 1.08993 * 109.47531 * 209.99690 * 1 2 3 31 31 H 1.09003 * 109.47212 * 330.00501 * 1 2 3 32 32 H 1.07997 * 119.92204 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.80720 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.92696 * 179.97438 * 6 5 4 35 35 H 0.96996 * 120.00052 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.47200 * 60.00094 * 11 10 8 37 37 H 1.08997 * 109.47487 * 300.00148 * 11 10 8 38 38 H 0.96700 * 114.00311 * 300.00378 * 14 12 11 39 39 H 1.09005 * 109.46682 * 304.99749 * 15 12 11 40 40 H 1.08999 * 109.47221 * 64.99915 * 15 12 11 41 41 H 0.96999 * 120.00388 * 359.97438 * 16 15 12 42 42 H 0.97005 * 119.99686 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.1247 0.0000 4 6 2.0399 2.4878 -0.0005 5 6 3.0907 3.3877 0.0002 6 6 4.3950 2.9377 0.0008 7 6 4.6640 1.5675 0.0013 8 6 6.0587 1.0847 0.0025 9 8 6.2886 -0.1092 0.0034 10 7 7.0774 1.9672 0.0026 11 6 8.4617 1.4879 0.0044 12 6 9.4156 2.6841 0.0048 13 1 9.2394 3.2890 0.8943 14 8 9.1872 3.4759 -1.1627 15 6 10.8614 2.1836 0.0060 16 7 11.7729 3.3241 0.1268 17 6 13.1267 3.1192 0.1502 18 1 13.5224 2.1168 0.0792 19 6 13.9904 4.1999 0.2641 20 7 15.2915 4.0028 0.2871 21 14 13.3059 5.9337 0.3862 22 1 13.0836 6.2787 1.8134 23 1 14.2727 6.8905 -0.2097 24 1 12.0175 6.0100 -0.3481 25 6 3.6027 0.6547 -0.0052 26 8 3.5474 -0.6972 -0.0118 27 6 2.2625 -1.0867 -0.0168 28 8 1.8780 -2.2402 -0.0228 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 1.0219 2.8483 -0.0013 33 1 2.8888 4.4487 0.0003 34 1 5.2096 3.6468 0.0009 35 1 6.8939 2.9197 0.0023 36 1 8.6378 0.8826 -0.8849 37 1 8.6361 0.8843 0.8950 38 1 9.3257 3.0008 -1.9935 39 1 11.0113 1.5080 0.8482 40 1 11.0634 1.6541 -0.9251 41 1 11.4176 4.2244 0.1902 42 1 15.8951 4.7580 0.3671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320235957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:56 Heat of formation + Delta-G solvation = -73.593778 kcal Electronic energy + Delta-G solvation = -27796.603806 eV Core-core repulsion = 23551.125712 eV Total energy + Delta-G solvation = -4245.478094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.78401 -40.26023 -38.78354 -37.93296 -37.77175 -36.34466 -34.62196 -34.19332 -31.89638 -31.41254 -30.51540 -29.39722 -28.38490 -26.03154 -24.18726 -23.70600 -22.78660 -22.10527 -21.57970 -20.69796 -19.20131 -18.67277 -17.96917 -17.76135 -17.41281 -16.66979 -16.37990 -16.15673 -15.61465 -15.45218 -15.20115 -15.01918 -14.68641 -14.56343 -14.55338 -14.02381 -13.80036 -13.69033 -13.32476 -13.18247 -12.88236 -12.75869 -12.62472 -12.45836 -12.42463 -12.04777 -11.40883 -11.33696 -11.22818 -10.89675 -10.85731 -10.31946 -10.18667 -9.80842 -9.58811 -9.51121 -9.22618 -8.95154 -8.76678 -7.28424 -5.79519 -3.16063 0.02851 0.50824 1.55062 1.96522 2.28126 2.39298 2.77033 3.18129 3.37217 3.42071 3.44760 3.69074 3.96785 4.14324 4.30787 4.37042 4.49307 4.54638 4.57749 4.61329 4.64012 4.72146 4.90387 5.05113 5.07896 5.16479 5.41341 5.44680 5.49143 5.57854 5.60882 5.67397 5.73161 5.82295 5.84408 6.17116 6.39610 6.51330 6.65131 7.15395 7.22947 7.71495 7.94556 7.95973 8.38732 9.18038 9.89794 10.09156 11.38450 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.002046 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.344573 B =13685.206111 C =14546.856303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.551 5.551 3 C 0.060 3.940 4 C -0.077 4.077 5 C -0.103 4.103 6 C -0.074 4.074 7 C -0.093 4.093 8 C 0.551 3.449 9 O -0.520 6.520 10 N -0.714 5.714 11 C 0.090 3.910 12 C 0.085 3.915 13 H 0.106 0.894 14 O -0.557 6.557 15 C 0.131 3.869 16 N -0.749 5.749 17 C -0.249 4.249 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.273 1.273 25 C 0.095 3.905 26 O -0.211 6.211 27 C 0.631 3.369 28 O -0.482 6.482 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.404 0.596 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.377 0.623 39 H 0.039 0.961 40 H 0.033 0.967 41 H 0.365 0.635 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.903 0.251 -1.042 34.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.284 5.284 3 C -0.038 4.038 4 C -0.098 4.098 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.097 4.097 8 C 0.337 3.663 9 O -0.396 6.396 10 N -0.366 5.366 11 C -0.035 4.035 12 C 0.025 3.975 13 H 0.124 0.876 14 O -0.363 6.363 15 C 0.003 3.997 16 N -0.395 5.395 17 C -0.378 4.378 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.199 1.199 25 C 0.045 3.955 26 O -0.115 6.115 27 C 0.386 3.614 28 O -0.364 6.364 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.241 0.759 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.224 0.776 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.199 0.801 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -34.721 -1.193 -0.598 34.746 hybrid contribution -0.395 1.184 -0.290 1.281 sum -35.116 -0.009 -0.888 35.127 Atomic orbital electron populations 1.21835 0.73400 1.04932 1.03764 1.45778 1.08336 1.04582 1.69707 1.18463 0.88639 0.90235 1.06445 1.20274 1.01058 0.87901 1.00550 1.20975 0.91152 1.00338 0.99724 1.21258 0.98225 0.92527 0.97320 1.19017 0.91447 0.91654 1.07548 1.17947 0.84381 0.86321 0.77627 1.90886 1.84887 1.15334 1.48512 1.45766 1.05919 1.10051 1.74906 1.22141 0.79849 0.97619 1.03849 1.22464 0.94125 0.91357 0.89541 0.87648 1.86535 1.91967 1.41812 1.15943 1.21177 0.87251 0.91571 0.99744 1.42560 1.03267 1.03297 1.90414 1.19046 0.80336 0.95344 1.43118 0.89244 1.24686 0.95081 0.97544 1.01761 1.69708 1.01043 1.30324 1.56931 0.86528 0.78306 0.85814 0.77868 1.21111 1.21751 1.19859 1.18716 0.93150 0.80890 1.02695 1.85198 1.27086 1.20203 1.79019 1.18688 0.78665 0.85503 0.78519 1.91162 1.74055 1.16009 1.55161 0.90645 0.88923 0.89317 0.84147 0.83350 0.83362 0.75949 0.90524 0.89897 0.77553 0.94365 0.94966 0.80122 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.06 59.84 0.66 1.04 16 2 N -0.55 -4.54 3.21 -126.43 -0.41 -4.95 16 3 C 0.06 0.47 6.84 -83.80 -0.57 -0.11 16 4 C -0.08 -0.33 10.02 -39.41 -0.39 -0.72 16 5 C -0.10 -0.38 10.02 -39.63 -0.40 -0.77 16 6 C -0.07 -0.41 9.53 -39.15 -0.37 -0.78 16 7 C -0.09 -0.89 5.88 -104.91 -0.62 -1.51 16 8 C 0.55 6.79 7.77 -12.44 -0.10 6.69 16 9 O -0.52 -8.71 16.08 -6.02 -0.10 -8.81 16 10 N -0.71 -7.22 5.40 -61.34 -0.33 -7.55 16 11 C 0.09 1.04 5.34 -4.04 -0.02 1.02 16 12 C 0.08 1.11 3.09 -26.73 -0.08 1.03 16 13 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 14 O -0.56 -7.29 13.03 -35.23 -0.46 -7.75 16 15 C 0.13 2.31 5.90 -4.04 -0.02 2.29 16 16 N -0.75 -17.24 5.35 -59.91 -0.32 -17.57 16 17 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 21 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.27 -6.38 6.52 56.52 0.37 -6.02 16 25 C 0.09 1.03 6.94 -38.50 -0.27 0.76 16 26 O -0.21 -2.95 10.03 -26.07 -0.26 -3.21 16 27 C 0.63 7.88 9.07 54.07 0.49 8.37 16 28 O -0.48 -7.24 17.82 -18.99 -0.34 -7.57 16 29 H 0.07 0.20 8.14 -51.92 -0.42 -0.23 16 30 H 0.09 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.14 0.17 8.06 -52.49 -0.42 -0.26 16 33 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 34 H 0.15 0.50 6.40 -52.49 -0.34 0.16 16 35 H 0.40 3.10 6.38 -40.82 -0.26 2.84 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.38 4.04 9.05 45.56 0.41 4.45 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.37 8.32 5.53 -40.82 -0.23 8.09 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -39.12 365.69 -6.82 -45.94 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.23 Total: 6.97 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -1.95 Total: 10.24 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.28 Total: -58.47 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.16 Total: -27.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.12 -6.82 -45.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320235957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.658 kcal (2) G-P(sol) polarization free energy of solvation -39.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds