Wall clock time and date at job start Tue Mar 31 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39517 * 126.27976 * 2 1 4 4 C 1.38595 * 133.30084 * 359.97438 * 3 2 1 5 5 C 1.38351 * 120.15835 * 179.97438 * 4 3 2 6 6 C 1.37979 * 120.38762 * 0.02562 * 5 4 3 7 7 C 1.39637 * 120.14291 * 359.97438 * 6 5 4 8 8 C 1.47586 * 120.20504 * 180.02562 * 7 6 5 9 9 O 1.21577 * 119.99913 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99887 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99638 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46900 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47164 * 60.00014 * 12 11 10 14 14 O 1.42903 * 109.47171 * 299.99748 * 12 11 10 15 15 C 1.53003 * 109.47376 * 180.02562 * 12 11 10 16 16 N 1.46494 * 109.47283 * 185.00021 * 15 12 11 17 17 C 1.36937 * 120.00022 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00269 * 0.02562 * 17 16 15 19 19 C 1.38819 * 120.00106 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99677 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99701 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47086 * 89.99739 * 21 19 17 23 23 H 1.48503 * 109.46612 * 209.99678 * 21 19 17 24 24 H 1.48497 * 109.46986 * 329.99380 * 21 19 17 25 25 C 1.39383 * 106.57354 * 180.22316 * 3 2 1 26 26 O 1.35307 * 107.36357 * 0.16323 * 25 3 2 27 27 C 1.34266 * 109.20544 * 0.26243 * 26 25 3 28 28 O 1.21590 * 125.29254 * 180.02562 * 27 26 25 29 29 H 1.09007 * 109.46498 * 89.99734 * 1 2 3 30 30 H 1.08993 * 109.47531 * 209.99690 * 1 2 3 31 31 H 1.09003 * 109.47212 * 330.00501 * 1 2 3 32 32 H 1.07997 * 119.92204 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.80720 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.92696 * 179.97438 * 6 5 4 35 35 H 0.96996 * 120.00052 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.47200 * 60.00094 * 11 10 8 37 37 H 1.08997 * 109.47487 * 300.00148 * 11 10 8 38 38 H 0.96700 * 114.00311 * 300.00378 * 14 12 11 39 39 H 1.09005 * 109.46682 * 304.99749 * 15 12 11 40 40 H 1.08999 * 109.47221 * 64.99915 * 15 12 11 41 41 H 0.96999 * 120.00388 * 359.97438 * 16 15 12 42 42 H 0.97005 * 119.99686 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.1247 0.0000 4 6 2.0399 2.4878 -0.0005 5 6 3.0907 3.3877 0.0002 6 6 4.3950 2.9377 0.0008 7 6 4.6640 1.5675 0.0013 8 6 6.0587 1.0847 0.0025 9 8 6.2886 -0.1092 0.0034 10 7 7.0774 1.9672 0.0026 11 6 8.4617 1.4879 0.0044 12 6 9.4156 2.6841 0.0048 13 1 9.2394 3.2890 0.8943 14 8 9.1872 3.4759 -1.1627 15 6 10.8614 2.1836 0.0060 16 7 11.7729 3.3241 0.1268 17 6 13.1267 3.1192 0.1502 18 1 13.5224 2.1168 0.0792 19 6 13.9904 4.1999 0.2641 20 7 15.2915 4.0028 0.2871 21 14 13.3059 5.9337 0.3862 22 1 13.0836 6.2787 1.8134 23 1 14.2727 6.8905 -0.2097 24 1 12.0175 6.0100 -0.3481 25 6 3.6027 0.6547 -0.0052 26 8 3.5474 -0.6972 -0.0118 27 6 2.2625 -1.0867 -0.0168 28 8 1.8780 -2.2402 -0.0228 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 1.0219 2.8483 -0.0013 33 1 2.8888 4.4487 0.0003 34 1 5.2096 3.6468 0.0009 35 1 6.8939 2.9197 0.0023 36 1 8.6378 0.8826 -0.8849 37 1 8.6361 0.8843 0.8950 38 1 9.3257 3.0008 -1.9935 39 1 11.0113 1.5080 0.8482 40 1 11.0634 1.6541 -0.9251 41 1 11.4176 4.2244 0.1902 42 1 15.8951 4.7580 0.3671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320235957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:55 Heat of formation + Delta-G solvation = -106.591467 kcal Electronic energy + Delta-G solvation = -27798.034693 eV Core-core repulsion = 23551.125712 eV Total energy + Delta-G solvation = -4246.908981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.49542 -41.13991 -39.59905 -38.92701 -38.66113 -37.00147 -36.21787 -35.38637 -33.48993 -32.42056 -31.07306 -30.62132 -28.84935 -27.41323 -25.16653 -24.27000 -23.96901 -23.23579 -22.85273 -21.54942 -19.91448 -19.72639 -19.34411 -18.75117 -18.19787 -17.66877 -17.25365 -17.18079 -16.51565 -16.39106 -16.18514 -16.01240 -15.79409 -15.39187 -15.19233 -15.16166 -15.01058 -14.76743 -14.56514 -14.25593 -13.97739 -13.49587 -13.38349 -13.35808 -13.23682 -13.14537 -12.92952 -12.78313 -12.25814 -12.20818 -11.87202 -11.80907 -11.74959 -11.32075 -11.02232 -10.91047 -10.31207 -9.90902 -9.34477 -9.30949 -8.02249 -5.36623 -0.53137 0.00960 0.92856 1.10038 1.41789 1.45302 1.53667 1.66882 1.70854 1.90936 2.50781 2.56203 3.11473 3.27673 3.37778 3.46110 3.52807 3.63564 3.82452 3.98053 4.01340 4.09142 4.11824 4.19759 4.33361 4.40808 4.59285 4.61360 4.70253 4.73173 4.76778 4.94101 5.03653 5.14323 5.17731 5.20874 5.25416 5.47938 5.74608 5.96865 6.20730 6.36848 6.41873 6.76392 7.08714 7.09070 7.83237 8.03661 9.18988 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.002046 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.344573 B =13685.206111 C =14546.856303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.537 5.537 3 C 0.053 3.947 4 C -0.053 4.053 5 C -0.086 4.086 6 C -0.059 4.059 7 C -0.118 4.118 8 C 0.548 3.452 9 O -0.579 6.579 10 N -0.696 5.696 11 C 0.098 3.902 12 C 0.109 3.891 13 H 0.117 0.883 14 O -0.560 6.560 15 C 0.122 3.878 16 N -0.750 5.750 17 C -0.240 4.240 18 H 0.053 0.947 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.961 3.039 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.246 1.246 25 C 0.048 3.952 26 O -0.250 6.250 27 C 0.617 3.383 28 O -0.529 6.529 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.186 0.814 33 H 0.196 0.804 34 H 0.175 0.825 35 H 0.419 0.581 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.388 0.612 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.370 0.630 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.721 4.862 -1.090 39.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.269 5.269 3 C -0.044 4.044 4 C -0.073 4.073 5 C -0.104 4.104 6 C -0.078 4.078 7 C -0.122 4.122 8 C 0.336 3.664 9 O -0.459 6.459 10 N -0.350 5.350 11 C -0.027 4.027 12 C 0.049 3.951 13 H 0.135 0.865 14 O -0.367 6.367 15 C -0.005 4.005 16 N -0.397 5.397 17 C -0.371 4.371 18 H 0.072 0.928 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.788 3.212 22 H -0.203 1.203 23 H -0.225 1.225 24 H -0.171 1.171 25 C 0.000 4.000 26 O -0.154 6.154 27 C 0.372 3.628 28 O -0.415 6.415 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.203 0.797 33 H 0.213 0.787 34 H 0.192 0.808 35 H 0.259 0.741 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.237 0.763 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.204 0.796 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -38.608 3.482 -0.659 38.770 hybrid contribution 0.780 -0.225 -0.300 0.866 sum -37.827 3.257 -0.958 37.979 Atomic orbital electron populations 1.22262 0.70732 1.06547 1.05278 1.45893 1.09532 1.03539 1.67942 1.18799 0.86942 0.91344 1.07337 1.20908 1.03626 0.85763 0.96999 1.21568 0.89643 1.02395 0.96765 1.21667 1.00424 0.90646 0.95090 1.19011 0.89318 0.93300 1.10536 1.18470 0.85874 0.85675 0.76359 1.90855 1.85854 1.17836 1.51385 1.45554 1.04828 1.10625 1.73965 1.21902 0.80528 0.96847 1.03404 1.22121 0.91081 0.91637 0.90238 0.86542 1.86510 1.91699 1.42052 1.16398 1.21403 0.89366 0.90211 0.99499 1.42503 1.01917 1.04979 1.90287 1.19032 0.82813 0.93827 1.41399 0.92849 1.25597 0.95310 1.02551 1.02361 1.69904 1.02824 1.31614 1.59132 0.85316 0.78302 0.79308 0.78309 1.20254 1.22451 1.17071 1.19260 0.95436 0.79799 1.05456 1.85085 1.28281 1.22729 1.79350 1.18920 0.78786 0.86051 0.79036 1.91091 1.74810 1.17863 1.57768 0.89169 0.89665 0.85385 0.79723 0.78690 0.80784 0.74127 0.91007 0.90663 0.76252 0.94569 0.94938 0.79562 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.06 127.77 1.41 1.90 16 2 N -0.54 -8.51 3.21 -784.47 -2.52 -11.02 16 3 C 0.05 0.71 6.84 38.28 0.26 0.98 16 4 C -0.05 -0.16 10.02 22.38 0.22 0.07 16 5 C -0.09 -0.08 10.02 22.24 0.22 0.14 16 6 C -0.06 -0.41 9.53 22.55 0.21 -0.19 16 7 C -0.12 -2.14 5.88 -20.05 -0.12 -2.26 16 8 C 0.55 13.61 7.77 86.71 0.67 14.28 16 9 O -0.58 -20.74 16.08 6.86 0.11 -20.63 16 10 N -0.70 -13.01 5.40 -466.23 -2.52 -15.53 16 11 C 0.10 2.18 5.34 86.38 0.46 2.64 16 12 C 0.11 2.62 3.09 30.60 0.09 2.71 16 13 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 14 O -0.56 -12.82 13.03 -148.98 -1.94 -14.76 16 15 C 0.12 4.21 5.90 86.38 0.51 4.72 16 16 N -0.75 -33.60 5.35 -343.45 -1.84 -35.44 16 17 C -0.24 -13.59 10.47 84.04 0.88 -12.71 16 18 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 19 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 20 N -0.98 -63.09 13.97 21.65 0.30 -62.79 16 21 Si 0.96 44.62 27.74 68.60 1.90 46.52 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 25 C 0.05 1.07 6.94 22.97 0.16 1.23 16 26 O -0.25 -7.69 10.03 15.42 0.15 -7.54 16 27 C 0.62 16.75 9.07 129.79 1.18 17.92 16 28 O -0.53 -17.57 17.82 19.22 0.34 -17.23 16 29 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.19 -1.01 8.06 -2.91 -0.02 -1.03 16 33 H 0.20 -1.44 8.06 -2.91 -0.02 -1.46 16 34 H 0.17 0.22 6.40 -2.91 -0.02 0.20 16 35 H 0.42 5.04 6.38 -92.71 -0.59 4.45 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.39 7.24 9.05 -74.06 -0.67 6.57 16 39 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.37 15.79 5.53 -92.71 -0.51 15.28 16 42 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -93.78 365.69 -0.09 -93.87 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.73 Total: 16.55 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 6.64 Total: 27.99 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -6.57 Total: -124.78 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -1.33 Total: -60.16 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -93.78 -0.09 -93.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320235957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.723 kcal (2) G-P(sol) polarization free energy of solvation -93.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds