Wall clock time and date at job start Tue Mar 31 2020 19:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35698 * 117.00120 * 2 1 4 4 C 1.39399 * 120.18265 * 269.98000 * 3 2 1 5 5 N 1.39883 * 120.03103 * 0.04219 * 4 3 2 6 6 C 1.34774 * 120.00440 * 145.25593 * 5 4 3 7 7 O 1.21396 * 119.99970 * 4.49294 * 6 5 4 8 8 C 1.49336 * 120.00495 * 184.49678 * 6 5 4 9 9 O 1.21366 * 119.99602 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00146 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99710 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46713 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47095 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99936 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00051 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00378 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99761 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47009 * 60.00089 * 17 15 13 19 19 H 1.48506 * 109.47050 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47256 * 299.99918 * 17 15 13 21 21 C 1.38663 * 119.93845 * 180.02562 * 4 3 2 22 22 C 1.38463 * 120.31914 * 0.02562 * 21 4 3 23 23 C 1.37794 * 120.36951 * 359.67831 * 22 21 4 24 24 C 1.39800 * 120.04953 * 0.59789 * 23 22 21 25 25 C 1.47548 * 120.16010 * 179.69907 * 24 23 22 26 26 N 1.34778 * 119.99448 * 359.72774 * 25 24 23 27 27 O 1.21581 * 120.00348 * 179.72823 * 25 24 23 28 28 H 1.09001 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47146 * 299.99930 * 1 2 3 30 30 H 1.09004 * 109.47077 * 60.00039 * 1 2 3 31 31 H 0.97007 * 119.99875 * 325.26084 * 5 4 3 32 32 H 0.97001 * 120.00019 * 0.02562 * 10 8 6 33 33 H 1.08999 * 109.47151 * 300.00310 * 11 10 8 34 34 H 1.08998 * 109.46606 * 60.00837 * 11 10 8 35 35 H 1.08991 * 109.47455 * 300.00222 * 12 11 10 36 36 H 1.09004 * 109.47387 * 60.00522 * 12 11 10 37 37 H 0.96995 * 120.00554 * 180.02562 * 16 15 13 38 38 H 1.08008 * 119.83795 * 179.97438 * 21 4 3 39 39 H 1.07995 * 119.81328 * 179.97438 * 22 21 4 40 40 H 1.08003 * 119.97914 * 180.29712 * 23 22 21 41 41 H 0.96998 * 120.00689 * 359.97438 * 26 25 24 42 42 H 0.97002 * 119.99919 * 179.72488 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3637 1.8333 -1.2050 5 7 2.0478 1.2144 -2.4190 6 6 1.6814 1.9599 -3.4804 7 8 1.7041 3.1715 -3.4079 8 6 1.2476 1.2957 -4.7455 9 8 1.2244 0.0844 -4.8178 10 7 0.8808 2.0413 -5.8067 11 6 0.4557 1.3896 -7.0480 12 6 0.0967 2.4547 -8.0860 13 6 -0.3412 1.7843 -9.3628 14 1 -0.3617 0.7064 -9.4272 15 6 -0.7155 2.5471 -10.4486 16 7 -0.6900 3.8596 -10.3704 17 14 -1.2589 1.7161 -12.0309 18 1 -2.4476 0.8678 -11.7615 19 1 -1.6073 2.7499 -13.0385 20 1 -0.1545 0.8702 -12.5503 21 6 2.9937 3.0685 -1.1991 22 6 3.3093 3.6865 -0.0009 23 6 2.9949 3.0839 1.1978 24 6 2.3649 1.8359 1.2099 25 6 2.0331 1.1854 2.4920 26 7 2.3424 1.7920 3.6552 27 8 1.4808 0.1023 2.4992 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0923 0.2485 -2.4970 32 1 0.8989 3.0094 -5.7487 33 1 1.2673 0.7699 -7.4294 34 1 -0.4160 0.7657 -6.8506 35 1 -0.7147 3.0746 -7.7049 36 1 0.9686 3.0783 -8.2833 37 1 -0.9537 4.3962 -11.1341 38 1 3.2401 3.5506 -2.1337 39 1 3.8003 4.6483 -0.0058 40 1 3.2397 3.5738 2.1287 41 1 2.7834 2.6559 3.6495 42 1 2.1207 1.3662 4.4981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323735994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:41 Heat of formation + Delta-G solvation = -140.790707 kcal Electronic energy + Delta-G solvation = -27878.168145 eV Core-core repulsion = 23629.776174 eV Total energy + Delta-G solvation = -4248.391972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41677 -41.37846 -40.10234 -39.34653 -38.28529 -37.00722 -36.01670 -34.84461 -34.63479 -31.79815 -31.63093 -30.85227 -28.03299 -27.46044 -25.83619 -25.11672 -23.25024 -22.84678 -22.19283 -21.15201 -20.11677 -19.38662 -18.67763 -18.48851 -18.07139 -17.74950 -17.28085 -16.96889 -16.76507 -16.72964 -16.50003 -16.24027 -15.98939 -15.61662 -15.56683 -15.20544 -14.88561 -14.79356 -14.53588 -14.30701 -13.68547 -13.43642 -13.27566 -13.23643 -12.93957 -12.71094 -12.59441 -12.54565 -12.28555 -11.78239 -11.69711 -11.46689 -11.31775 -11.05807 -10.71697 -10.62892 -10.61506 -10.26455 -9.94663 -9.38639 -8.23575 -6.34560 -0.37390 -0.25289 0.36684 1.07867 1.43510 1.45361 1.53391 1.76244 1.99225 2.31905 2.40450 2.45492 2.58777 2.87750 3.11432 3.25138 3.74158 3.84091 3.99608 4.12179 4.22922 4.27537 4.36547 4.38559 4.43831 4.48753 4.70068 4.80112 4.88152 4.98505 5.01228 5.13744 5.28111 5.41299 5.54539 5.58852 5.71550 5.78697 5.89638 6.12106 6.18927 6.32261 6.44273 6.53298 6.75885 6.82069 7.31930 7.34853 8.88049 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.002005 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.003463 B =13964.059557 C =14615.054630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.334 6.334 3 C 0.115 3.885 4 C 0.095 3.905 5 N -0.632 5.632 6 C 0.519 3.481 7 O -0.511 6.511 8 C 0.504 3.496 9 O -0.544 6.544 10 N -0.682 5.682 11 C 0.137 3.863 12 C 0.019 3.981 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.091 4.091 22 C -0.104 4.104 23 C -0.065 4.065 24 C -0.160 4.160 25 C 0.559 3.441 26 N -0.827 5.827 27 O -0.567 6.567 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.429 0.571 32 H 0.417 0.583 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.143 0.857 39 H 0.174 0.826 40 H 0.180 0.820 41 H 0.417 0.583 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 1.423 29.867 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.251 6.251 3 C 0.067 3.933 4 C 0.001 3.999 5 N -0.279 5.279 6 C 0.301 3.699 7 O -0.385 6.385 8 C 0.284 3.716 9 O -0.423 6.423 10 N -0.334 5.334 11 C 0.015 3.985 12 C -0.018 4.018 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.193 4.193 16 N -0.566 5.566 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.084 4.084 24 C -0.164 4.164 25 C 0.345 3.655 26 N -0.393 5.393 27 O -0.446 6.446 28 H 0.124 0.876 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.268 0.732 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.191 0.809 40 H 0.197 0.803 41 H 0.250 0.750 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.837 0.707 29.527 30.829 hybrid contribution -0.479 -0.028 -0.904 1.023 sum 8.359 0.679 28.623 29.826 Atomic orbital electron populations 1.22929 0.77326 1.04221 0.99814 1.85931 1.21114 1.23996 1.94042 1.18678 0.97018 0.87046 0.90511 1.18200 1.02193 0.95717 0.83808 1.42955 1.64390 1.12275 1.08298 1.20113 0.77996 0.87021 0.84735 1.90752 1.51483 1.13576 1.82729 1.19968 0.79593 0.87130 0.84884 1.90762 1.53957 1.14070 1.83485 1.46029 1.63314 1.11730 1.12302 1.21525 0.99024 0.96253 0.81745 1.19172 0.96136 0.93833 0.92704 1.21416 1.45326 0.93727 0.97942 0.91750 1.25896 0.95412 0.95453 1.02580 1.70055 1.48640 1.05567 1.32345 0.85478 0.79061 0.78088 0.78292 1.19293 1.20856 1.19236 1.21656 0.94830 0.93205 1.01459 1.21443 0.99126 1.01497 0.90107 1.21694 0.94532 0.91492 1.00667 1.20234 1.06709 0.97412 0.92063 1.18115 0.78087 0.84390 0.84931 1.43529 1.63042 1.25470 1.07264 1.90855 1.43444 1.22299 1.88047 0.87565 0.93557 0.94265 0.73182 0.74652 0.91817 0.91941 0.97307 0.97190 0.92562 0.83960 0.80856 0.80298 0.74980 0.75375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 10.49 113.37 1.19 2.34 16 2 O -0.33 -8.72 8.39 -69.23 -0.58 -9.30 16 3 C 0.11 2.63 5.75 22.97 0.13 2.77 16 4 C 0.09 2.17 6.32 38.24 0.24 2.41 16 5 N -0.63 -15.86 5.17 -304.56 -1.58 -17.43 16 6 C 0.52 14.85 7.73 87.23 0.67 15.52 16 7 O -0.51 -15.31 13.89 -3.39 -0.05 -15.36 16 8 C 0.50 16.69 7.89 87.23 0.69 17.38 16 9 O -0.54 -20.13 16.48 -3.30 -0.05 -20.19 16 10 N -0.68 -23.87 5.55 -464.52 -2.58 -26.45 16 11 C 0.14 5.60 5.61 86.38 0.48 6.09 16 12 C 0.02 0.94 5.09 29.85 0.15 1.09 16 13 C -0.55 -29.74 9.11 25.60 0.23 -29.50 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.01 0.30 5.46 84.66 0.46 0.77 16 16 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 17 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 C -0.09 -1.73 8.69 22.43 0.19 -1.54 16 22 C -0.10 -1.14 10.02 22.22 0.22 -0.91 16 23 C -0.07 -0.59 9.53 22.54 0.21 -0.38 16 24 C -0.16 -2.75 5.88 -20.03 -0.12 -2.87 16 25 C 0.56 9.89 8.04 86.70 0.70 10.59 16 26 N -0.83 -5.57 8.82 -175.81 -1.55 -7.12 16 27 O -0.57 -15.18 14.84 16.98 0.25 -14.93 16 28 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.04 7.50 -2.39 -0.02 1.02 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.43 10.55 8.04 -92.70 -0.75 9.81 16 32 H 0.42 13.73 7.94 -92.71 -0.74 12.99 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.14 2.99 6.18 -2.91 -0.02 2.97 16 39 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.18 -0.14 6.40 -2.91 -0.02 -0.16 16 41 H 0.42 -0.30 6.86 -92.71 -0.64 -0.93 16 42 H 0.41 1.95 8.93 -92.71 -0.83 1.12 16 Total: -1.00 -75.08 367.69 -0.17 -75.25 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -1.81 Total: 20.49 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 5.47 Total: 23.76 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -5.42 Total: -104.78 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -0.43 Total: -59.77 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -75.08 -0.17 -75.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323735994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.540 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds