Wall clock time and date at job start Tue Mar 31 2020 18:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99760 * 2 1 4 4 C 1.50704 * 109.47009 * 275.00326 * 3 2 1 5 5 O 1.21274 * 120.00072 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99816 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00072 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47282 * 179.97438 * 7 6 4 9 9 O 1.42901 * 110.64338 * 298.31527 * 8 7 6 10 10 C 1.55154 * 110.71880 * 174.97661 * 8 7 6 11 11 C 1.54910 * 101.58031 * 206.13651 * 10 8 7 12 12 N 1.47426 * 104.83209 * 37.01037 * 11 10 8 13 13 C 1.36937 * 125.64487 * 155.84912 * 12 11 10 14 14 H 1.08001 * 119.99600 * 180.02562 * 13 12 11 15 15 C 1.38807 * 120.00345 * 0.02772 * 13 12 11 16 16 N 1.31623 * 120.00215 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99940 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47596 * 89.99890 * 17 15 13 19 19 H 1.48507 * 109.46905 * 210.00085 * 17 15 13 20 20 H 1.48500 * 109.47159 * 329.99420 * 17 15 13 21 21 C 1.47019 * 108.70209 * 335.87354 * 12 11 10 22 22 S 1.65595 * 120.00163 * 180.02562 * 2 1 3 23 23 C 1.81405 * 104.44745 * 269.99836 * 22 2 1 24 24 O 1.42096 * 104.27938 * 26.06823 * 22 2 1 25 25 O 1.42096 * 104.27966 * 153.92868 * 22 2 1 26 26 H 1.08995 * 109.47505 * 90.00378 * 1 2 3 27 27 H 1.09001 * 109.47008 * 209.99803 * 1 2 3 28 28 H 1.09002 * 109.47454 * 329.99670 * 1 2 3 29 29 H 1.08998 * 109.47254 * 154.99783 * 3 2 1 30 30 H 1.09002 * 109.47380 * 34.99963 * 3 2 1 31 31 H 0.97006 * 120.00120 * 359.97438 * 6 4 3 32 32 H 1.09000 * 109.46837 * 59.99936 * 7 6 4 33 33 H 1.09000 * 109.47332 * 300.00307 * 7 6 4 34 34 H 0.96694 * 114.00195 * 61.68414 * 9 8 7 35 35 H 1.09002 * 111.00945 * 88.06458 * 10 8 7 36 36 H 1.08999 * 111.00353 * 324.20996 * 10 8 7 37 37 H 1.08998 * 110.36709 * 278.17139 * 11 10 8 38 38 H 1.09005 * 110.36466 * 155.84673 * 11 10 8 39 39 H 0.96993 * 120.00387 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.88389 * 120.48020 * 21 12 11 41 41 H 1.09004 * 109.87600 * 241.48978 * 21 12 11 42 42 H 1.08997 * 109.47460 * 59.99985 * 23 22 2 43 43 H 1.09004 * 109.47225 * 180.02562 * 23 22 2 44 44 H 1.08999 * 109.47248 * 300.00293 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 8 1.8781 1.1232 -2.3338 6 7 2.9856 2.9238 -1.6608 7 6 3.1260 3.4067 -3.0368 8 6 3.8908 4.7318 -3.0368 9 8 3.1745 5.7269 -2.3027 10 6 4.1662 5.2066 -4.4880 11 6 5.4370 6.0714 -4.2963 12 7 6.2222 5.3656 -3.2673 13 6 7.5771 5.4601 -3.0931 14 1 8.0607 4.8997 -2.3066 15 6 8.3290 6.2760 -3.9271 16 7 7.7397 6.9586 -4.8859 17 14 10.1775 6.4042 -3.6898 18 1 10.8548 5.3657 -4.5070 19 1 10.6393 7.7494 -4.1170 20 1 10.5079 6.1996 -2.2565 21 6 5.3096 4.5432 -2.4597 22 16 2.2930 -1.4341 -0.0006 23 6 2.5194 -1.8268 1.7559 24 8 1.3971 -2.3558 -0.6062 25 8 3.5395 -1.1188 -0.6057 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 3.1857 1.1178 0.4343 30 1 1.6501 2.0043 0.5894 31 1 3.3565 3.4376 -0.9263 32 1 2.1378 3.5579 -3.4713 33 1 3.6732 2.6709 -3.6261 34 1 3.0442 5.5095 -1.3696 35 1 3.3387 5.8068 -4.8665 36 1 4.3652 4.3599 -5.1449 37 1 5.1681 7.0694 -3.9501 38 1 5.9995 6.1309 -5.2282 39 1 8.2652 7.5285 -5.4689 40 1 5.5999 3.4946 -2.5246 41 1 5.3363 4.8715 -1.4206 42 1 1.5452 -1.9196 2.2359 43 1 3.0627 -2.7670 1.8509 44 1 3.0866 -1.0296 2.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325100783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:31 Heat of formation + Delta-G solvation = -108.524942 kcal Electronic energy + Delta-G solvation = -27853.741980 eV Core-core repulsion = 23742.193108 eV Total energy + Delta-G solvation = -4111.548872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.00320 -38.55295 -37.41600 -36.30803 -36.03885 -35.11990 -34.14734 -32.10881 -30.04378 -29.90071 -29.18454 -27.85147 -25.94733 -25.15239 -23.40185 -21.03677 -20.08199 -19.92889 -19.25069 -18.10145 -17.86831 -16.98407 -16.84557 -16.51767 -16.12018 -15.57324 -15.36715 -14.73868 -14.68139 -14.33195 -14.29956 -13.84465 -13.78392 -13.62517 -13.40635 -13.28263 -13.09636 -12.90057 -12.60036 -12.33151 -12.26809 -12.11053 -11.97843 -11.80630 -11.57825 -11.35776 -11.03595 -10.87110 -10.75544 -10.47572 -10.30230 -10.14862 -9.96691 -9.72006 -9.47077 -9.22200 -9.06617 -8.65250 -6.85979 -5.66402 -3.08818 -0.14998 2.19630 2.57208 3.10211 3.39908 3.44441 3.46593 3.61666 3.75069 4.10695 4.37915 4.44121 4.46879 4.47698 4.62597 4.77341 4.89647 4.92342 5.13317 5.19373 5.19668 5.40910 5.44595 5.50282 5.60396 5.64414 5.90535 5.97290 6.01328 6.24742 6.33954 6.41980 6.49826 6.60979 6.63658 7.40330 7.55784 7.60809 7.84030 7.92257 8.16994 8.34280 9.20081 9.80572 10.44764 11.37413 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.002626 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.317594 B =10658.545684 C =11592.767154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.986 5.986 3 C 0.106 3.894 4 C 0.496 3.504 5 O -0.526 6.526 6 N -0.726 5.726 7 C 0.106 3.894 8 C 0.105 3.895 9 O -0.543 6.543 10 C -0.128 4.128 11 C 0.156 3.844 12 N -0.600 5.600 13 C -0.225 4.225 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.921 5.921 17 Si 0.916 3.084 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.116 3.884 22 S 2.609 3.391 23 C -0.676 4.676 24 O -0.948 6.948 25 O -0.943 6.943 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.398 0.602 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.363 0.637 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.018 0.982 38 H 0.108 0.892 39 H 0.253 0.747 40 H 0.032 0.968 41 H 0.023 0.977 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.641 -13.067 16.095 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.822 5.822 3 C -0.024 4.024 4 C 0.279 3.721 5 O -0.402 6.402 6 N -0.380 5.380 7 C -0.018 4.018 8 C 0.064 3.936 9 O -0.347 6.347 10 C -0.167 4.167 11 C 0.031 3.969 12 N -0.326 5.326 13 C -0.353 4.353 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.569 5.569 17 Si 0.746 3.254 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.208 1.208 21 C -0.011 4.011 22 S 2.701 3.299 23 C -0.825 4.825 24 O -0.939 6.939 25 O -0.933 6.933 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.209 0.791 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.040 0.960 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.543 -13.606 13.995 24.951 hybrid contribution 1.072 0.258 1.843 2.148 sum -14.471 -13.347 15.839 25.267 Atomic orbital electron populations 1.21501 0.77626 1.02525 1.03267 1.57152 1.15528 1.20073 1.89489 1.21141 0.98896 0.87301 0.95043 1.21066 0.78214 0.80841 0.91957 1.90715 1.47570 1.55923 1.45947 1.45955 1.58116 1.23984 1.09900 1.22073 1.01263 0.95805 0.82697 1.22564 0.90270 0.85440 0.95326 1.86629 1.77504 1.46180 1.24418 1.23053 1.01002 1.01195 0.91475 1.21941 0.87430 0.91511 0.95973 1.44415 1.02747 1.50979 1.34476 1.19061 0.80991 1.22410 1.12875 0.90502 1.24798 0.98369 0.99186 0.98208 1.69791 1.33568 1.32520 1.21037 0.86055 0.84726 0.77054 0.77527 1.21530 1.21632 1.20756 1.21936 0.89059 0.95529 0.94572 1.05134 0.74140 0.73272 0.77368 1.30618 1.11676 1.12242 1.27969 1.93611 1.64675 1.62377 1.73198 1.93657 1.44010 1.82572 1.73050 0.91577 0.90993 0.90994 0.86987 0.87047 0.76793 0.90794 0.90242 0.79078 0.91091 0.90552 0.96388 0.87438 0.93641 0.95006 0.95955 0.85431 0.85339 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 10.22 59.85 0.61 1.24 16 2 N -0.99 -7.95 2.61 -123.05 -0.32 -8.27 16 3 C 0.11 0.78 5.76 -5.19 -0.03 0.75 16 4 C 0.50 6.18 7.89 -10.98 -0.09 6.09 16 5 O -0.53 -8.97 16.42 5.56 0.09 -8.87 16 6 N -0.73 -8.47 5.17 -60.30 -0.31 -8.78 16 7 C 0.11 1.56 4.73 -4.04 -0.02 1.54 16 8 C 0.11 1.78 0.92 -88.79 -0.08 1.70 16 9 O -0.54 -8.65 13.10 -35.23 -0.46 -9.11 16 10 C -0.13 -2.47 6.26 -24.58 -0.15 -2.63 16 11 C 0.16 3.84 5.88 -2.53 -0.01 3.82 16 12 N -0.60 -15.31 3.39 -170.07 -0.58 -15.88 16 13 C -0.23 -6.27 10.27 -15.06 -0.15 -6.42 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 17 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 C 0.12 2.31 6.02 -3.07 -0.02 2.29 16 22 S 2.61 23.92 5.96 -107.50 -0.64 23.28 16 23 C -0.68 -2.67 10.99 101.05 1.11 -1.56 16 24 O -0.95 -12.02 17.09 -57.54 -0.98 -13.00 16 25 O -0.94 -12.68 16.99 -57.54 -0.98 -13.66 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.33 7.79 -51.93 -0.40 -0.08 16 28 H 0.07 0.28 7.94 -51.93 -0.41 -0.13 16 29 H 0.11 0.60 7.61 -51.93 -0.40 0.21 16 30 H 0.11 0.37 7.96 -51.93 -0.41 -0.04 16 31 H 0.40 3.46 7.38 -40.82 -0.30 3.16 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 34 H 0.36 4.08 8.12 45.56 0.37 4.45 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.03 0.64 7.82 -51.93 -0.41 0.24 16 41 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 42 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 44 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -40.64 374.00 -7.97 -48.61 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.03 Total: 2.93 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 1.07 Total: 6.45 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.65 Total: -59.29 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -2.33 Total: -44.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 23.92 SS G_CDS: -0.64 Total: 23.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.64 -7.97 -48.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325100783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.914 kcal (2) G-P(sol) polarization free energy of solvation -40.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds