Wall clock time and date at job start Tue Mar 31 2020 18:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00107 * 2 1 4 4 C 1.50703 * 109.47070 * 85.00196 * 3 2 1 5 5 O 1.21274 * 120.00152 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99611 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99693 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46964 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.70667 * 59.85548 * 8 7 6 10 10 C 1.53711 * 109.74653 * 180.62171 * 8 7 6 11 11 O 1.42960 * 109.14905 * 172.16512 * 10 8 7 12 12 C 1.42956 * 114.16835 * 297.29390 * 11 10 8 13 13 C 1.53297 * 109.22706 * 62.57646 * 12 11 10 14 14 N 1.47148 * 108.38218 * 307.70296 * 13 12 11 15 15 C 1.36937 * 120.97867 * 230.50697 * 14 13 12 16 16 H 1.08005 * 120.00113 * 148.90408 * 15 14 13 17 17 C 1.38812 * 120.00197 * 328.89754 * 15 14 13 18 18 N 1.31617 * 119.99936 * 349.29431 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 169.01395 * 17 15 14 20 20 H 1.48504 * 109.47011 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46787 * 120.00412 * 19 17 15 22 22 H 1.48493 * 109.47159 * 240.00231 * 19 17 15 23 23 S 1.65604 * 119.99660 * 179.97438 * 2 1 3 24 24 C 1.81397 * 104.45128 * 269.99930 * 23 2 1 25 25 O 1.42095 * 104.27527 * 26.07428 * 23 2 1 26 26 O 1.42098 * 104.27552 * 153.92939 * 23 2 1 27 27 H 1.08996 * 109.47263 * 90.00094 * 1 2 3 28 28 H 1.09003 * 109.47392 * 210.00388 * 1 2 3 29 29 H 1.09008 * 109.46779 * 330.00250 * 1 2 3 30 30 H 1.08993 * 109.47117 * 324.99805 * 3 2 1 31 31 H 1.09007 * 109.46953 * 204.99946 * 3 2 1 32 32 H 0.96995 * 120.00267 * 359.97438 * 6 4 3 33 33 H 1.09005 * 109.47232 * 60.00323 * 7 6 4 34 34 H 1.08997 * 109.47124 * 299.99748 * 7 6 4 35 35 H 1.09003 * 109.65355 * 52.20118 * 10 8 7 36 36 H 1.08995 * 109.49056 * 292.03357 * 10 8 7 37 37 H 1.08999 * 109.51561 * 302.65197 * 12 11 10 38 38 H 1.09005 * 109.55632 * 182.52690 * 12 11 10 39 39 H 1.08998 * 109.68330 * 187.97188 * 13 12 11 40 40 H 1.09006 * 109.70639 * 67.43902 * 13 12 11 41 41 H 0.97001 * 119.99929 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.46807 * 60.00011 * 24 23 2 43 43 H 1.08990 * 109.47380 * 180.02562 * 24 23 2 44 44 H 1.09005 * 109.47207 * 300.00304 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 8 1.8775 1.1236 2.3337 6 7 2.9850 2.9242 1.6607 7 6 3.1245 3.4075 3.0366 8 6 3.8897 4.7325 3.0365 9 1 3.3470 5.4702 2.4455 10 6 4.0532 5.2378 4.4790 11 8 4.9218 6.3732 4.4824 12 6 6.2498 6.0957 4.0316 13 6 6.2006 5.6322 2.5712 14 7 5.2311 4.5302 2.4665 15 6 5.5656 3.3533 1.8516 16 1 5.1196 2.4263 2.1807 17 6 6.4777 3.3515 0.8053 18 7 6.8610 4.4886 0.2645 19 14 7.1673 1.7359 0.1699 20 1 6.5855 0.6106 0.9449 21 1 6.8198 1.5798 -1.2654 22 1 8.6441 1.7329 0.3249 23 16 2.2929 -1.4342 0.0006 24 6 2.5193 -1.8255 1.7574 25 8 1.3969 -2.3563 -0.6042 26 8 3.5394 -1.1195 -0.6047 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6502 2.0042 -0.5894 31 1 3.1858 1.1176 -0.4343 32 1 3.3558 3.4379 0.9262 33 1 3.6721 2.6722 3.6263 34 1 2.1361 3.5584 3.4706 35 1 4.4823 4.4492 5.0972 36 1 3.0795 5.5230 4.8770 37 1 6.6869 5.3103 4.6482 38 1 6.8567 6.9979 4.1070 39 1 7.1865 5.2845 2.2630 40 1 5.8870 6.4589 1.9336 41 1 7.4987 4.4875 -0.4665 42 1 1.5450 -1.9178 2.2375 43 1 3.0625 -2.7655 1.8532 44 1 3.0866 -1.0279 2.2371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326631187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:45 Heat of formation + Delta-G solvation = -106.908904 kcal Electronic energy + Delta-G solvation = -29119.247592 eV Core-core repulsion = 25007.768796 eV Total energy + Delta-G solvation = -4111.478795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.55548 -38.43255 -37.13208 -36.11486 -35.82808 -35.16513 -33.63912 -31.69469 -30.53237 -29.35722 -28.79969 -27.23086 -25.87995 -24.48460 -23.49916 -21.78849 -20.22004 -19.71486 -18.85405 -17.76977 -17.32867 -16.60476 -16.42828 -15.97880 -15.90089 -15.68463 -15.02709 -14.74473 -14.48933 -14.30577 -14.01875 -13.93801 -13.71220 -13.37042 -13.17162 -13.04682 -12.88114 -12.71245 -12.65596 -12.35000 -12.07370 -11.95061 -11.64849 -11.58045 -11.39451 -11.04077 -11.01932 -10.89760 -10.78036 -10.46873 -10.23490 -10.10707 -10.01561 -9.69744 -9.13577 -8.83516 -8.72978 -8.38568 -6.78457 -5.95220 -3.46285 0.28758 2.50449 2.95376 3.31263 3.42703 3.46827 3.63556 3.88447 4.16935 4.32775 4.48250 4.57132 4.92157 5.03482 5.06300 5.17222 5.23703 5.27743 5.44206 5.51333 5.57885 5.66150 5.70674 5.77728 5.81969 5.89095 5.96069 6.01443 6.09700 6.15201 6.28204 6.36968 6.46704 6.67843 6.96184 7.02158 7.44512 7.65201 7.81502 8.05192 8.23976 8.63087 9.00562 9.61147 10.20048 11.10656 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.004364 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.601380 B = 6415.236111 C = 7671.003554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.982 5.982 3 C 0.094 3.906 4 C 0.484 3.516 5 O -0.560 6.560 6 N -0.689 5.689 7 C 0.136 3.864 8 C 0.124 3.876 9 H 0.042 0.958 10 C 0.056 3.944 11 O -0.393 6.393 12 C 0.035 3.965 13 C 0.144 3.856 14 N -0.591 5.591 15 C -0.261 4.261 16 H 0.074 0.926 17 C 0.013 3.987 18 N -0.898 5.898 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.288 1.288 23 S 2.608 3.392 24 C -0.660 4.660 25 O -0.961 6.961 26 O -0.953 6.953 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.418 0.582 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.256 0.744 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -4.429 2.489 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.818 5.818 3 C -0.035 4.035 4 C 0.268 3.732 5 O -0.440 6.440 6 N -0.341 5.341 7 C 0.012 3.988 8 C 0.017 3.983 9 H 0.059 0.941 10 C -0.023 4.023 11 O -0.311 6.311 12 C -0.043 4.043 13 C 0.019 3.981 14 N -0.317 5.317 15 C -0.390 4.390 16 H 0.091 0.909 17 C -0.188 4.188 18 N -0.541 5.541 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.215 1.215 23 S 2.701 3.299 24 C -0.811 4.811 25 O -0.951 6.951 26 O -0.943 6.943 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.256 0.744 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.896 -5.135 2.275 11.379 hybrid contribution 0.762 -0.557 -0.019 0.944 sum -9.134 -5.692 2.256 10.996 Atomic orbital electron populations 1.21404 0.77943 1.03190 1.01767 1.57038 1.15220 1.20192 1.89323 1.21307 1.00269 0.86833 0.95127 1.21154 0.78588 0.81797 0.91697 1.90616 1.50029 1.57254 1.46116 1.46035 1.54628 1.22953 1.10470 1.21167 0.98418 0.95831 0.83386 1.21515 0.88631 0.94144 0.93988 0.94062 1.22934 0.93648 0.88993 0.96715 1.87799 1.22576 1.33895 1.86850 1.23356 0.82882 0.99673 0.98408 1.21415 0.96324 0.90176 0.90232 1.44102 1.05977 1.14649 1.66982 1.19240 1.24169 0.85455 1.10129 0.90876 1.25152 1.00888 0.96523 0.96196 1.69983 1.34546 1.24226 1.25338 0.86411 0.78956 0.83402 0.79352 1.19770 1.20889 1.21499 1.04977 0.73864 0.73187 0.77863 1.30443 1.11940 1.11749 1.26957 1.93583 1.64886 1.62431 1.74216 1.93632 1.43828 1.82746 1.74085 0.92337 0.91266 0.90934 0.86972 0.85617 0.74408 0.91477 0.92273 0.93544 0.90020 0.94140 0.90239 0.88935 0.95250 0.93376 0.85398 0.86140 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.20 59.85 0.61 1.65 16 2 N -0.98 -12.51 2.61 -123.05 -0.32 -12.83 16 3 C 0.09 1.26 6.12 -5.19 -0.03 1.23 16 4 C 0.48 7.61 7.89 -10.98 -0.09 7.53 16 5 O -0.56 -9.58 15.01 5.56 0.08 -9.50 16 6 N -0.69 -11.45 3.78 -60.29 -0.23 -11.68 16 7 C 0.14 2.28 4.46 -4.04 -0.02 2.26 16 8 C 0.12 2.27 3.23 -67.21 -0.22 2.05 16 9 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 10 C 0.06 0.94 6.31 37.53 0.24 1.18 16 11 O -0.39 -7.34 10.74 -35.23 -0.38 -7.72 16 12 C 0.03 0.64 6.98 37.31 0.26 0.91 16 13 C 0.14 3.15 5.37 -3.53 -0.02 3.13 16 14 N -0.59 -12.92 3.03 -164.06 -0.50 -13.42 16 15 C -0.26 -6.15 7.06 -15.06 -0.11 -6.26 16 16 H 0.07 1.74 5.82 -52.48 -0.31 1.44 16 17 C 0.01 0.31 5.06 -17.43 -0.09 0.23 16 18 N -0.90 -23.52 11.13 55.49 0.62 -22.90 16 19 Si 0.89 20.77 29.57 -169.99 -5.03 15.75 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 S 2.61 36.06 6.02 -107.50 -0.65 35.41 16 24 C -0.66 -7.80 10.52 101.05 1.06 -6.74 16 25 O -0.96 -14.62 17.09 -57.54 -0.98 -15.61 16 26 O -0.95 -16.72 16.53 -57.54 -0.95 -17.67 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 29 H 0.07 0.68 8.07 -51.92 -0.42 0.26 16 30 H 0.11 1.17 8.11 -51.93 -0.42 0.75 16 31 H 0.13 1.85 6.82 -51.93 -0.35 1.50 16 32 H 0.42 7.30 7.32 -40.82 -0.30 7.00 16 33 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.09 2.25 6.32 -51.93 -0.33 1.92 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 42 H 0.13 1.31 8.14 -51.92 -0.42 0.89 16 43 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.14 1.85 7.22 -51.92 -0.37 1.48 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -31.61 364.77 -7.89 -39.50 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.66 Total: 8.01 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 1.60 Total: 7.16 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.43 Total: -60.83 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -2.23 Total: -50.50 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 16 Polarization: 36.06 SS G_CDS: -0.65 Total: 35.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.61 -7.89 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326631187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.410 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds