Wall clock time and date at job start Tue Mar 31 2020 18:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00146 * 2 1 4 4 C 1.50701 * 109.47306 * 275.00318 * 3 2 1 5 5 O 1.21283 * 119.99462 * 359.97438 * 4 3 2 6 6 N 1.34767 * 120.00599 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00577 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47651 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.68047 * 300.07950 * 8 7 6 10 10 C 1.53300 * 109.68619 * 179.52199 * 8 7 6 11 11 O 1.42960 * 109.22309 * 187.97592 * 10 8 7 12 12 C 1.42969 * 114.16755 * 62.57811 * 11 10 8 13 13 C 1.53285 * 109.22294 * 297.41898 * 12 11 10 14 14 N 1.47153 * 108.38795 * 52.30262 * 13 12 11 15 15 C 1.36928 * 120.98480 * 129.48389 * 14 13 12 16 16 H 1.08003 * 120.00655 * 211.15588 * 15 14 13 17 17 C 1.38818 * 119.99990 * 31.15712 * 15 14 13 18 18 N 1.31614 * 119.99872 * 10.77599 * 17 15 14 19 19 Si 1.86800 * 119.99916 * 190.77228 * 17 15 14 20 20 H 1.48493 * 109.47078 * 60.00254 * 19 17 15 21 21 H 1.48507 * 109.46774 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47318 * 299.99740 * 19 17 15 23 23 S 1.65601 * 120.00195 * 179.97438 * 2 1 3 24 24 C 1.81392 * 104.45094 * 270.00030 * 23 2 1 25 25 O 1.42100 * 104.27267 * 26.07219 * 23 2 1 26 26 O 1.42094 * 104.27526 * 153.92786 * 23 2 1 27 27 H 1.08991 * 109.47081 * 89.99954 * 1 2 3 28 28 H 1.09004 * 109.46991 * 210.00568 * 1 2 3 29 29 H 1.09007 * 109.47193 * 329.99755 * 1 2 3 30 30 H 1.08994 * 109.47690 * 154.99679 * 3 2 1 31 31 H 1.09005 * 109.47077 * 34.99388 * 3 2 1 32 32 H 0.97008 * 119.99626 * 359.97438 * 6 4 3 33 33 H 1.09005 * 109.47419 * 59.99614 * 7 6 4 34 34 H 1.08998 * 109.47076 * 299.99907 * 7 6 4 35 35 H 1.09006 * 109.50810 * 307.89955 * 10 8 7 36 36 H 1.08994 * 109.51342 * 68.04712 * 10 8 7 37 37 H 1.09005 * 109.50956 * 177.48896 * 12 11 10 38 38 H 1.09002 * 109.50886 * 57.34737 * 12 11 10 39 39 H 1.09004 * 109.68328 * 292.58025 * 13 12 11 40 40 H 1.09003 * 109.68219 * 172.02611 * 13 12 11 41 41 H 0.97001 * 120.00174 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.47258 * 60.00136 * 24 23 2 43 43 H 1.09000 * 109.47291 * 179.97438 * 24 23 2 44 44 H 1.09005 * 109.47361 * 299.99956 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4154 5 8 1.8781 1.1231 -2.3337 6 7 2.9849 2.9242 -1.6608 7 6 3.1252 3.4071 -3.0367 8 6 3.8890 4.7327 -3.0367 9 1 3.3442 5.4702 -2.4474 10 6 4.0491 5.2365 -4.4757 11 8 4.9189 6.3710 -4.4831 12 6 6.2473 6.0931 -4.0337 13 6 6.1998 5.6332 -2.5722 14 7 5.2294 4.5324 -2.4633 15 6 5.5635 3.3566 -1.8462 16 1 5.1168 2.4292 -2.1729 17 6 6.4766 3.3565 -0.8006 18 7 6.8600 4.4944 -0.2616 19 14 7.1611 1.7414 -0.1584 20 1 7.8706 1.0339 -1.2543 21 1 8.1092 2.0123 0.9520 22 1 6.0471 0.8942 0.3380 23 16 2.2930 -1.4341 0.0006 24 6 2.5194 -1.8254 1.7573 25 8 1.3970 -2.3563 -0.6042 26 8 3.5394 -1.1193 -0.6047 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 3.1857 1.1178 0.4343 31 1 1.6501 2.0044 0.5894 32 1 3.3551 3.4383 -0.9262 33 1 2.1371 3.5575 -3.4716 34 1 3.6733 2.6716 -3.6257 35 1 4.4764 4.4460 -5.0927 36 1 3.0747 5.5221 -4.8719 37 1 6.8544 6.9950 -4.1122 38 1 6.6826 5.3058 -4.6492 39 1 5.8878 6.4619 -1.9366 40 1 7.1859 5.2851 -2.2647 41 1 7.4983 4.4944 0.4688 42 1 1.5451 -1.9178 2.2375 43 1 3.0619 -2.7659 1.8532 44 1 3.0867 -1.0277 2.2371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326631188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:48 Heat of formation + Delta-G solvation = -103.570507 kcal Electronic energy + Delta-G solvation = -29039.393508 eV Core-core repulsion = 24928.059477 eV Total energy + Delta-G solvation = -4111.334031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.38592 -38.35273 -37.08200 -36.03476 -35.76744 -35.08834 -33.52696 -31.60654 -30.47287 -29.62730 -28.76504 -27.17096 -25.81722 -24.43669 -23.42842 -21.71795 -20.09890 -19.64422 -18.83761 -17.69244 -17.29727 -16.58555 -16.36034 -15.92547 -15.82139 -15.59842 -14.96191 -14.66354 -14.44545 -14.22366 -13.99770 -13.87011 -13.66452 -13.46585 -13.31571 -13.07247 -12.89041 -12.74110 -12.57088 -12.22615 -11.99894 -11.86527 -11.61163 -11.57320 -11.37396 -11.03252 -10.96780 -10.82195 -10.72375 -10.40153 -10.22796 -10.02300 -9.91968 -9.64798 -9.07700 -8.75191 -8.64152 -8.23695 -6.71946 -5.89084 -3.39014 0.18368 2.54963 3.16449 3.35822 3.38946 3.49274 3.77835 3.94174 4.09302 4.38463 4.47218 4.54431 4.70330 4.79356 5.14244 5.25035 5.27301 5.31609 5.37117 5.44223 5.47833 5.62029 5.73493 5.80220 5.86485 5.89945 6.03499 6.11584 6.17244 6.26134 6.34217 6.38333 6.53228 6.77534 7.08226 7.13305 7.49107 7.75084 7.87416 8.22405 8.31071 8.84681 9.07888 9.67871 10.26603 11.17059 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.004328 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.850146 B = 6467.561097 C = 7778.590389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.984 5.984 3 C 0.105 3.895 4 C 0.493 3.507 5 O -0.550 6.550 6 N -0.694 5.694 7 C 0.137 3.863 8 C 0.126 3.874 9 H 0.041 0.959 10 C 0.056 3.944 11 O -0.393 6.393 12 C 0.034 3.966 13 C 0.144 3.856 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.076 0.924 17 C 0.010 3.990 18 N -0.902 5.902 19 Si 0.892 3.108 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.272 1.272 23 S 2.606 3.394 24 C -0.678 4.678 25 O -0.953 6.953 26 O -0.936 6.936 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.415 0.585 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.029 0.971 40 H 0.092 0.908 41 H 0.255 0.745 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 -4.628 5.121 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.821 5.821 3 C -0.024 4.024 4 C 0.276 3.724 5 O -0.429 6.429 6 N -0.347 5.347 7 C 0.012 3.988 8 C 0.018 3.982 9 H 0.059 0.941 10 C -0.023 4.023 11 O -0.312 6.312 12 C -0.044 4.044 13 C 0.019 3.981 14 N -0.317 5.317 15 C -0.385 4.385 16 H 0.094 0.906 17 C -0.190 4.190 18 N -0.546 5.546 19 Si 0.721 3.279 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.198 1.198 23 S 2.698 3.302 24 C -0.827 4.827 25 O -0.943 6.943 26 O -0.927 6.927 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.253 0.747 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.059 -5.350 3.829 12.019 hybrid contribution 0.815 -0.628 1.601 1.903 sum -9.244 -5.978 5.429 12.274 Atomic orbital electron populations 1.21449 0.78017 1.02185 1.03010 1.57084 1.15234 1.20298 1.89461 1.21151 0.98717 0.86627 0.95915 1.20858 0.78628 0.81420 0.91445 1.90644 1.49590 1.56719 1.45904 1.45963 1.55348 1.23139 1.10207 1.21142 0.98339 0.95686 0.83604 1.21426 0.88585 0.94218 0.93923 0.94130 1.22869 0.93652 0.89001 0.96826 1.87797 1.22476 1.34002 1.86877 1.23359 0.82907 0.99638 0.98454 1.21410 0.96301 0.90205 0.90203 1.44093 1.06095 1.14821 1.66680 1.19270 1.23719 0.85621 1.09879 0.90633 1.25129 1.01041 0.96450 0.96346 1.69982 1.34781 1.24194 1.25639 0.86524 0.79409 0.83510 0.78499 1.20853 1.21779 1.19756 1.05191 0.74294 0.73374 0.77373 1.30642 1.11481 1.12146 1.28458 1.93588 1.64859 1.62619 1.73267 1.93691 1.43809 1.82369 1.72783 0.91716 0.91343 0.91161 0.87019 0.87476 0.74737 0.92414 0.91499 0.93500 0.89955 0.90275 0.94124 0.95285 0.88976 0.93482 0.85569 0.85534 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 10.22 59.85 0.61 1.61 16 2 N -0.98 -12.53 2.61 -123.05 -0.32 -12.85 16 3 C 0.11 1.43 5.76 -5.19 -0.03 1.40 16 4 C 0.49 8.92 7.89 -10.99 -0.09 8.83 16 5 O -0.55 -11.72 16.42 5.55 0.09 -11.63 16 6 N -0.69 -12.68 3.77 -60.30 -0.23 -12.91 16 7 C 0.14 2.53 4.45 -4.05 -0.02 2.52 16 8 C 0.13 2.43 3.21 -67.42 -0.22 2.21 16 9 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.06 0.99 6.29 37.31 0.23 1.22 16 11 O -0.39 -7.64 10.74 -35.23 -0.38 -8.02 16 12 C 0.03 0.66 6.98 37.31 0.26 0.92 16 13 C 0.14 3.25 5.38 -3.54 -0.02 3.23 16 14 N -0.59 -13.49 3.03 -164.30 -0.50 -13.99 16 15 C -0.26 -6.31 7.06 -15.06 -0.11 -6.42 16 16 H 0.08 1.94 5.81 -52.48 -0.30 1.64 16 17 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 18 N -0.90 -23.87 11.14 55.49 0.62 -23.25 16 19 Si 0.89 20.92 29.57 -169.99 -5.03 15.90 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 S 2.61 35.61 5.96 -107.50 -0.64 34.97 16 24 C -0.68 -5.61 10.99 101.05 1.11 -4.50 16 25 O -0.95 -15.32 17.09 -57.54 -0.98 -16.30 16 26 O -0.94 -17.55 16.99 -57.54 -0.98 -18.53 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 29 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 30 H 0.11 1.51 7.61 -51.93 -0.40 1.11 16 31 H 0.11 1.02 7.96 -51.93 -0.41 0.61 16 32 H 0.41 7.65 7.31 -40.82 -0.30 7.35 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.39 7.57 -51.93 -0.39 1.00 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.29 6.33 -51.93 -0.33 1.96 16 41 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 42 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 43 H 0.13 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.13 0.96 8.14 -51.92 -0.42 0.53 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -35.16 368.11 -7.88 -43.04 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.74 Total: 6.83 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 1.65 Total: 11.18 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.43 Total: -62.99 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.25 Total: -54.48 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 16 Polarization: 35.61 SS G_CDS: -0.64 Total: 34.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.16 -7.88 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326631188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.535 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds