Wall clock time and date at job start Tue Mar 31 2020 18:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00146 * 2 1 4 4 C 1.50701 * 109.47306 * 275.00318 * 3 2 1 5 5 O 1.21283 * 119.99462 * 359.97438 * 4 3 2 6 6 N 1.34767 * 120.00599 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00577 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47651 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.68047 * 300.07950 * 8 7 6 10 10 C 1.53300 * 109.68619 * 179.52199 * 8 7 6 11 11 O 1.42960 * 109.22309 * 187.97592 * 10 8 7 12 12 C 1.42969 * 114.16755 * 62.57811 * 11 10 8 13 13 C 1.53285 * 109.22294 * 297.41898 * 12 11 10 14 14 N 1.47153 * 108.38795 * 52.30262 * 13 12 11 15 15 C 1.36928 * 120.98480 * 129.48389 * 14 13 12 16 16 H 1.08003 * 120.00655 * 211.15588 * 15 14 13 17 17 C 1.38818 * 119.99990 * 31.15712 * 15 14 13 18 18 N 1.31614 * 119.99872 * 10.77599 * 17 15 14 19 19 Si 1.86800 * 119.99916 * 190.77228 * 17 15 14 20 20 H 1.48493 * 109.47078 * 60.00254 * 19 17 15 21 21 H 1.48507 * 109.46774 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47318 * 299.99740 * 19 17 15 23 23 S 1.65601 * 120.00195 * 179.97438 * 2 1 3 24 24 C 1.81392 * 104.45094 * 270.00030 * 23 2 1 25 25 O 1.42100 * 104.27267 * 26.07219 * 23 2 1 26 26 O 1.42094 * 104.27526 * 153.92786 * 23 2 1 27 27 H 1.08991 * 109.47081 * 89.99954 * 1 2 3 28 28 H 1.09004 * 109.46991 * 210.00568 * 1 2 3 29 29 H 1.09007 * 109.47193 * 329.99755 * 1 2 3 30 30 H 1.08994 * 109.47690 * 154.99679 * 3 2 1 31 31 H 1.09005 * 109.47077 * 34.99388 * 3 2 1 32 32 H 0.97008 * 119.99626 * 359.97438 * 6 4 3 33 33 H 1.09005 * 109.47419 * 59.99614 * 7 6 4 34 34 H 1.08998 * 109.47076 * 299.99907 * 7 6 4 35 35 H 1.09006 * 109.50810 * 307.89955 * 10 8 7 36 36 H 1.08994 * 109.51342 * 68.04712 * 10 8 7 37 37 H 1.09005 * 109.50956 * 177.48896 * 12 11 10 38 38 H 1.09002 * 109.50886 * 57.34737 * 12 11 10 39 39 H 1.09004 * 109.68328 * 292.58025 * 13 12 11 40 40 H 1.09003 * 109.68219 * 172.02611 * 13 12 11 41 41 H 0.97001 * 120.00174 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.47258 * 60.00136 * 24 23 2 43 43 H 1.09000 * 109.47291 * 179.97438 * 24 23 2 44 44 H 1.09005 * 109.47361 * 299.99956 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4154 5 8 1.8781 1.1231 -2.3337 6 7 2.9849 2.9242 -1.6608 7 6 3.1252 3.4071 -3.0367 8 6 3.8890 4.7327 -3.0367 9 1 3.3442 5.4702 -2.4474 10 6 4.0491 5.2365 -4.4757 11 8 4.9189 6.3710 -4.4831 12 6 6.2473 6.0931 -4.0337 13 6 6.1998 5.6332 -2.5722 14 7 5.2294 4.5324 -2.4633 15 6 5.5635 3.3566 -1.8462 16 1 5.1168 2.4292 -2.1729 17 6 6.4766 3.3565 -0.8006 18 7 6.8600 4.4944 -0.2616 19 14 7.1611 1.7414 -0.1584 20 1 7.8706 1.0339 -1.2543 21 1 8.1092 2.0123 0.9520 22 1 6.0471 0.8942 0.3380 23 16 2.2930 -1.4341 0.0006 24 6 2.5194 -1.8254 1.7573 25 8 1.3970 -2.3563 -0.6042 26 8 3.5394 -1.1193 -0.6047 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 3.1857 1.1178 0.4343 31 1 1.6501 2.0044 0.5894 32 1 3.3551 3.4383 -0.9262 33 1 2.1371 3.5575 -3.4716 34 1 3.6733 2.6716 -3.6257 35 1 4.4764 4.4460 -5.0927 36 1 3.0747 5.5221 -4.8719 37 1 6.8544 6.9950 -4.1122 38 1 6.6826 5.3058 -4.6492 39 1 5.8878 6.4619 -1.9366 40 1 7.1859 5.2851 -2.2647 41 1 7.4983 4.4944 0.4688 42 1 1.5451 -1.9178 2.2375 43 1 3.0619 -2.7659 1.8532 44 1 3.0867 -1.0277 2.2371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326631188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:47 Heat of formation + Delta-G solvation = -132.887532 kcal Electronic energy + Delta-G solvation = -29040.664790 eV Core-core repulsion = 24928.059477 eV Total energy + Delta-G solvation = -4112.605313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85229 -39.89569 -38.23909 -37.23177 -36.98117 -36.50445 -35.23333 -33.29009 -32.17685 -30.35720 -29.87518 -28.91203 -27.06974 -25.64138 -25.19472 -23.31927 -21.53453 -21.29137 -19.93634 -18.90600 -18.64757 -17.99195 -17.67840 -17.38048 -17.18595 -16.99161 -16.30876 -16.25037 -16.09539 -15.59657 -15.45087 -15.22708 -15.03152 -14.70838 -14.37502 -14.24368 -14.03672 -13.86779 -13.81354 -13.52295 -13.28104 -13.18722 -13.10771 -12.82948 -12.72092 -12.57796 -12.53113 -12.43017 -12.10458 -11.98536 -11.95647 -11.83074 -11.31702 -11.19957 -10.68175 -10.54190 -9.92694 -9.79828 -8.59122 -7.84649 -5.35279 -0.77969 1.44673 1.48156 1.57030 1.58857 1.77776 2.42683 2.51335 2.98703 3.04128 3.12836 3.31082 3.46476 3.62438 3.98251 4.04627 4.06979 4.12958 4.23726 4.33088 4.35665 4.45344 4.48835 4.61479 4.65440 4.67116 4.70248 4.76851 4.85426 4.97519 5.01493 5.08925 5.13568 5.32885 5.46882 5.61762 5.67877 5.74047 6.30326 6.39971 6.77851 7.14391 7.42033 7.79214 8.35053 9.19229 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.004328 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.850146 B = 6467.561097 C = 7778.590389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.985 5.985 3 C 0.106 3.894 4 C 0.483 3.517 5 O -0.590 6.590 6 N -0.696 5.696 7 C 0.143 3.857 8 C 0.128 3.872 9 H 0.045 0.955 10 C 0.056 3.944 11 O -0.396 6.396 12 C 0.045 3.955 13 C 0.150 3.850 14 N -0.605 5.605 15 C -0.243 4.243 16 H 0.063 0.937 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 0.930 3.070 20 H -0.301 1.301 21 H -0.289 1.289 22 H -0.263 1.263 23 S 2.591 3.409 24 C -0.641 4.641 25 O -0.992 6.992 26 O -1.003 7.003 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.155 0.845 32 H 0.414 0.586 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.011 0.989 40 H 0.065 0.935 41 H 0.251 0.749 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -4.448 6.899 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.822 5.822 3 C -0.023 4.023 4 C 0.269 3.731 5 O -0.471 6.471 6 N -0.347 5.347 7 C 0.018 3.982 8 C 0.022 3.978 9 H 0.062 0.938 10 C -0.022 4.022 11 O -0.315 6.315 12 C -0.033 4.033 13 C 0.024 3.976 14 N -0.331 5.331 15 C -0.373 4.373 16 H 0.081 0.919 17 C -0.221 4.221 18 N -0.568 5.568 19 Si 0.759 3.241 20 H -0.229 1.229 21 H -0.214 1.214 22 H -0.188 1.188 23 S 2.689 3.311 24 C -0.796 4.796 25 O -0.983 6.983 26 O -0.993 6.993 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.173 0.827 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.181 0.819 43 H 0.163 0.837 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.505 -5.154 5.552 13.775 hybrid contribution 1.202 -0.718 1.048 1.749 sum -10.303 -5.873 6.600 13.572 Atomic orbital electron populations 1.21664 0.76527 1.05080 1.01984 1.56960 1.16144 1.19401 1.89698 1.21306 0.99943 0.87972 0.93067 1.21810 0.77425 0.80609 0.93260 1.90622 1.51200 1.57572 1.47687 1.46004 1.55321 1.23500 1.09897 1.21046 0.98845 0.94435 0.83895 1.21541 0.86849 0.94637 0.94777 0.93779 1.22994 0.95057 0.88648 0.95529 1.87802 1.22448 1.34649 1.86574 1.23234 0.83510 1.00766 0.95804 1.21240 0.94811 0.89397 0.92141 1.44271 1.07792 1.14287 1.66734 1.19195 1.22947 0.85957 1.09197 0.91933 1.25480 1.01751 0.97880 0.96968 1.70071 1.35485 1.25081 1.26157 0.85929 0.79022 0.81580 0.77552 1.22855 1.21432 1.18768 1.05272 0.72764 0.73130 0.79966 1.30309 1.14345 1.13608 1.21293 1.93531 1.65180 1.63463 1.76088 1.93610 1.46198 1.83202 1.76291 0.94813 0.88863 0.87841 0.86918 0.82736 0.74802 0.90323 0.94329 0.93847 0.86401 0.87649 0.94256 0.97039 0.91676 0.93915 0.81933 0.83680 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 10.22 127.77 1.31 2.98 16 2 N -0.99 -23.53 2.61 -543.22 -1.42 -24.94 16 3 C 0.11 2.70 5.76 85.63 0.49 3.19 16 4 C 0.48 17.43 7.89 87.66 0.69 18.12 16 5 O -0.59 -25.71 16.42 -3.04 -0.05 -25.76 16 6 N -0.70 -25.27 3.77 -463.09 -1.75 -27.02 16 7 C 0.14 5.26 4.45 86.38 0.38 5.65 16 8 C 0.13 4.85 3.21 44.96 0.14 4.99 16 9 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 10 C 0.06 1.90 6.29 72.08 0.45 2.35 16 11 O -0.40 -14.61 10.74 -148.98 -1.60 -16.21 16 12 C 0.04 1.67 6.98 72.08 0.50 2.17 16 13 C 0.15 6.77 5.38 86.35 0.46 7.23 16 14 N -0.60 -27.66 3.03 -673.73 -2.04 -29.70 16 15 C -0.24 -12.13 7.06 84.04 0.59 -11.54 16 16 H 0.06 3.30 5.81 -2.91 -0.02 3.28 16 17 C -0.02 -1.22 5.06 84.86 0.43 -0.79 16 18 N -0.92 -49.29 11.14 21.65 0.24 -49.05 16 19 Si 0.93 43.28 29.57 68.60 2.03 45.30 16 20 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 S 2.59 68.66 5.96 -56.49 -0.34 68.32 16 24 C -0.64 -7.86 10.99 113.37 1.25 -6.61 16 25 O -0.99 -32.03 17.09 -127.65 -2.18 -34.21 16 26 O -1.00 -38.45 16.99 -127.65 -2.17 -40.62 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 1.20 7.79 -2.39 -0.02 1.18 16 29 H 0.10 1.17 7.94 -2.38 -0.02 1.15 16 30 H 0.11 2.87 7.61 -2.39 -0.02 2.86 16 31 H 0.16 2.39 7.96 -2.38 -0.02 2.37 16 32 H 0.41 15.10 7.31 -92.70 -0.68 14.42 16 33 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.04 1.64 7.57 -2.39 -0.02 1.62 16 35 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.06 3.30 6.33 -2.39 -0.02 3.28 16 41 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 42 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -80.19 368.11 -2.23 -82.41 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.33 Total: 23.74 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: 6.71 Total: 27.74 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -4.96 Total: -130.71 kcal Atomic # 8 Polarization: -110.81 SS G_CDS: -6.00 Total: -116.81 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 68.66 SS G_CDS: -0.34 Total: 68.32 kcal Total: -80.19 -2.23 -82.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326631188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.473 kcal (2) G-P(sol) polarization free energy of solvation -80.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds