Wall clock time and date at job start Tue Mar 31 2020 19:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00170 * 2 1 4 4 C 1.50695 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.38292 * 119.92406 * 269.72762 * 4 3 2 6 6 C 1.38105 * 120.07426 * 179.73148 * 5 4 3 7 7 C 1.38933 * 119.92135 * 0.56242 * 6 5 4 8 8 N 1.39716 * 120.07218 * 179.68510 * 7 6 5 9 9 C 1.34774 * 120.00406 * 33.35845 * 8 7 6 10 10 O 1.21381 * 120.00040 * 5.26525 * 9 8 7 11 11 C 1.49358 * 120.00159 * 185.27448 * 9 8 7 12 12 O 1.21350 * 120.00085 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99564 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99559 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.47267 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99952 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00237 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00032 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99862 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00053 * 179.97438 * 18 17 15 21 21 N 1.31422 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00066 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46589 * 90.00429 * 22 20 18 24 24 H 1.48503 * 109.47063 * 210.00366 * 22 20 18 25 25 H 1.48495 * 109.47180 * 330.00570 * 22 20 18 26 26 C 1.38929 * 119.84848 * 359.71370 * 7 6 5 27 27 C 1.38097 * 119.92309 * 359.97438 * 26 7 6 28 28 H 1.08994 * 109.46962 * 59.99322 * 1 2 3 29 29 H 1.09000 * 109.47116 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46930 * 300.00055 * 1 2 3 31 31 H 1.08993 * 109.47104 * 300.00295 * 3 2 1 32 32 H 1.09002 * 109.46658 * 59.99972 * 3 2 1 33 33 H 1.07996 * 119.96563 * 0.02562 * 5 4 3 34 34 H 1.07997 * 120.03806 * 180.25492 * 6 5 4 35 35 H 0.97003 * 119.99926 * 213.34824 * 8 7 6 36 36 H 0.97002 * 120.00336 * 359.97438 * 13 11 9 37 37 H 1.08999 * 109.47510 * 300.00156 * 14 13 11 38 38 H 1.09009 * 109.46963 * 60.00461 * 14 13 11 39 39 H 0.96999 * 119.99877 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99947 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.03622 * 179.97438 * 26 7 6 42 42 H 1.08002 * 119.96125 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2002 1.1378 1.1995 6 6 5.5765 1.0231 1.2037 7 6 6.2711 0.9683 0.0017 8 7 7.6639 0.8589 0.0023 9 6 8.2851 0.1666 0.9776 10 8 7.6322 -0.4414 1.8006 11 6 9.7771 0.1476 1.0458 12 8 10.4299 0.7551 0.2229 13 7 10.3982 -0.5444 2.0215 14 6 11.8615 -0.5635 2.0881 15 6 12.3001 -1.4022 3.2608 16 8 11.4718 -1.9323 3.9709 17 7 13.6127 -1.5633 3.5207 18 6 14.0116 -2.3259 4.5879 19 1 13.2741 -2.7979 5.2201 20 6 15.3649 -2.4924 4.8555 21 7 16.2624 -1.9185 4.0859 22 14 15.9085 -3.5320 6.3092 23 1 16.0751 -4.9422 5.8744 24 1 17.2011 -3.0183 6.8293 25 1 14.8814 -3.4621 7.3794 26 6 5.5774 1.0232 -1.2008 27 6 4.2007 1.1314 -1.1977 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 3.6601 1.1848 2.1335 34 1 6.1126 0.9810 2.1403 35 1 8.1839 1.2812 -0.6993 36 1 9.8763 -1.0298 2.6795 37 1 12.2616 -0.9890 1.1678 38 1 12.2330 0.4541 2.2095 39 1 14.2751 -1.1392 2.9531 40 1 17.2071 -2.0345 4.2730 41 1 6.1143 0.9813 -2.1370 42 1 3.6609 1.1737 -2.1321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326870760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:49 Heat of formation + Delta-G solvation = -117.368832 kcal Electronic energy + Delta-G solvation = -26745.223604 eV Core-core repulsion = 22497.847281 eV Total energy + Delta-G solvation = -4247.376323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18505 -39.77332 -38.80279 -38.12130 -37.72741 -35.48576 -34.49417 -33.76806 -31.43751 -31.31148 -31.25359 -28.44859 -27.45360 -25.94237 -24.88047 -23.72708 -23.23794 -21.51953 -20.32848 -19.80642 -18.89139 -18.13208 -17.64717 -16.89592 -16.75516 -16.42684 -16.35066 -16.00182 -15.49338 -15.40437 -15.05799 -14.78640 -14.57681 -14.48040 -14.14794 -13.79027 -13.77194 -13.59364 -13.48687 -13.02038 -12.66659 -12.30927 -12.10143 -12.06876 -11.89813 -11.66668 -11.50562 -11.43173 -11.14966 -10.63903 -10.47754 -10.34661 -10.11241 -9.73375 -9.67637 -9.20401 -9.12609 -8.70652 -8.43612 -8.14599 -6.55358 -3.97453 0.71242 1.13115 1.44894 2.16518 3.03358 3.09936 3.20996 3.26263 3.30535 3.50508 3.67388 3.80410 4.07450 4.38638 4.48013 4.52430 4.69851 4.75556 4.80388 4.87924 4.95579 4.97814 5.11799 5.12465 5.25058 5.27137 5.35924 5.69630 5.71304 5.78849 5.89212 5.94415 5.97414 6.13628 6.28657 6.32028 6.65287 6.72853 6.81601 7.32434 7.43069 7.63094 7.85413 7.99061 8.39911 9.00630 9.33402 9.81153 10.61307 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.001682 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.779402 B =16639.310384 C =17460.578718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.105 3.895 4 C -0.110 4.110 5 C -0.076 4.076 6 C -0.122 4.122 7 C 0.154 3.846 8 N -0.649 5.649 9 C 0.510 3.490 10 O -0.490 6.490 11 C 0.507 3.493 12 O -0.528 6.528 13 N -0.669 5.669 14 C 0.106 3.894 15 C 0.425 3.575 16 O -0.592 6.592 17 N -0.546 5.546 18 C -0.306 4.306 19 H 0.107 0.893 20 C 0.027 3.973 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.144 4.144 27 C -0.078 4.078 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.424 0.576 36 H 0.424 0.576 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.131 0.869 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.388 9.778 -12.131 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.029 3.971 4 C -0.111 4.111 5 C -0.095 4.095 6 C -0.143 4.143 7 C 0.060 3.940 8 N -0.296 5.296 9 C 0.292 3.708 10 O -0.362 6.362 11 C 0.286 3.714 12 O -0.405 6.405 13 N -0.324 5.324 14 C -0.021 4.021 15 C 0.210 3.790 16 O -0.479 6.479 17 N -0.181 5.181 18 C -0.435 4.435 19 H 0.124 0.876 20 C -0.176 4.176 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.164 4.164 27 C -0.097 4.097 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.262 0.738 36 H 0.265 0.735 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.149 0.851 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.497 9.219 -11.564 28.615 hybrid contribution 0.686 -0.054 0.242 0.729 sum -23.811 9.166 -11.321 27.913 Atomic orbital electron populations 1.22767 0.80981 1.02956 0.99951 1.88009 1.19588 1.27444 1.95383 1.21317 0.89824 0.85120 1.00871 1.19555 0.94031 1.03963 0.93569 1.20925 0.93455 0.97433 0.97670 1.21191 0.94400 1.00934 0.97728 1.17785 0.82099 0.99640 0.94462 1.43169 1.05375 1.52174 1.28897 1.20388 0.89265 0.79299 0.81816 1.90826 1.66770 1.40202 1.38390 1.19668 0.87667 0.81228 0.82839 1.90765 1.66497 1.43531 1.39725 1.45513 1.08037 1.49054 1.29795 1.21148 0.79302 1.01847 0.99842 1.19626 0.84079 0.87221 0.88080 1.90541 1.51737 1.53587 1.51985 1.41767 1.04768 1.44173 1.27371 1.19755 0.92020 1.26166 1.05589 0.87564 1.25332 0.95450 0.97808 0.99022 1.69614 1.02010 1.43229 1.38524 0.85796 0.78082 0.79433 0.80639 1.20224 1.20773 1.19272 1.20894 0.94378 1.04633 0.96517 1.20798 0.93198 0.98051 0.97620 0.94061 0.89491 0.93988 0.92431 0.92380 0.85414 0.84357 0.73808 0.73524 0.89014 0.89009 0.77001 0.91539 0.85140 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.57 10.69 -35.23 -0.38 -3.95 16 3 C 0.10 0.77 6.06 36.00 0.22 0.99 16 4 C -0.11 -1.00 5.51 -104.58 -0.58 -1.58 16 5 C -0.08 -0.76 9.69 -39.61 -0.38 -1.14 16 6 C -0.12 -1.42 8.65 -39.37 -0.34 -1.76 16 7 C 0.15 1.69 6.28 -83.75 -0.53 1.16 16 8 N -0.65 -7.18 5.32 -10.29 -0.05 -7.24 16 9 C 0.51 7.10 7.62 -11.63 -0.09 7.01 16 10 O -0.49 -7.89 14.16 5.47 0.08 -7.81 16 11 C 0.51 7.71 7.89 -11.63 -0.09 7.62 16 12 O -0.53 -8.49 16.48 5.50 0.09 -8.40 16 13 N -0.67 -11.20 5.52 -61.94 -0.34 -11.54 16 14 C 0.11 1.85 6.15 -5.19 -0.03 1.82 16 15 C 0.42 9.55 7.85 -10.99 -0.09 9.47 16 16 O -0.59 -15.22 15.24 5.55 0.08 -15.13 16 17 N -0.55 -13.23 5.29 -10.96 -0.06 -13.29 16 18 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 19 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.03 0.70 5.50 -17.46 -0.10 0.60 16 21 N -0.89 -23.44 13.05 55.50 0.72 -22.72 16 22 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 C -0.14 -1.28 9.96 -39.38 -0.39 -1.67 16 27 C -0.08 -0.65 9.69 -39.61 -0.38 -1.04 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.75 6.42 -52.49 -0.34 1.41 16 35 H 0.42 3.81 8.30 -40.82 -0.34 3.47 16 36 H 0.42 7.57 6.91 -40.82 -0.28 7.29 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 39 H 0.40 9.12 7.90 -40.82 -0.32 8.80 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -32.31 374.21 -6.06 -38.37 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -5.01 Total: 16.31 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: -1.81 Total: 14.41 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.27 Total: -54.78 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.12 Total: -35.29 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.31 -6.06 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326870760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.995 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds