Wall clock time and date at job start Tue Mar 31 2020 19:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00170 * 2 1 4 4 C 1.50695 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.38292 * 119.92406 * 269.72762 * 4 3 2 6 6 C 1.38105 * 120.07426 * 179.73148 * 5 4 3 7 7 C 1.38933 * 119.92135 * 0.56242 * 6 5 4 8 8 N 1.39716 * 120.07218 * 179.68510 * 7 6 5 9 9 C 1.34774 * 120.00406 * 33.35845 * 8 7 6 10 10 O 1.21381 * 120.00040 * 5.26525 * 9 8 7 11 11 C 1.49358 * 120.00159 * 185.27448 * 9 8 7 12 12 O 1.21350 * 120.00085 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99564 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99559 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.47267 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99952 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00237 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00032 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99862 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00053 * 179.97438 * 18 17 15 21 21 N 1.31422 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00066 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46589 * 90.00429 * 22 20 18 24 24 H 1.48503 * 109.47063 * 210.00366 * 22 20 18 25 25 H 1.48495 * 109.47180 * 330.00570 * 22 20 18 26 26 C 1.38929 * 119.84848 * 359.71370 * 7 6 5 27 27 C 1.38097 * 119.92309 * 359.97438 * 26 7 6 28 28 H 1.08994 * 109.46962 * 59.99322 * 1 2 3 29 29 H 1.09000 * 109.47116 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46930 * 300.00055 * 1 2 3 31 31 H 1.08993 * 109.47104 * 300.00295 * 3 2 1 32 32 H 1.09002 * 109.46658 * 59.99972 * 3 2 1 33 33 H 1.07996 * 119.96563 * 0.02562 * 5 4 3 34 34 H 1.07997 * 120.03806 * 180.25492 * 6 5 4 35 35 H 0.97003 * 119.99926 * 213.34824 * 8 7 6 36 36 H 0.97002 * 120.00336 * 359.97438 * 13 11 9 37 37 H 1.08999 * 109.47510 * 300.00156 * 14 13 11 38 38 H 1.09009 * 109.46963 * 60.00461 * 14 13 11 39 39 H 0.96999 * 119.99877 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99947 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.03622 * 179.97438 * 26 7 6 42 42 H 1.08002 * 119.96125 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2002 1.1378 1.1995 6 6 5.5765 1.0231 1.2037 7 6 6.2711 0.9683 0.0017 8 7 7.6639 0.8589 0.0023 9 6 8.2851 0.1666 0.9776 10 8 7.6322 -0.4414 1.8006 11 6 9.7771 0.1476 1.0458 12 8 10.4299 0.7551 0.2229 13 7 10.3982 -0.5444 2.0215 14 6 11.8615 -0.5635 2.0881 15 6 12.3001 -1.4022 3.2608 16 8 11.4718 -1.9323 3.9709 17 7 13.6127 -1.5633 3.5207 18 6 14.0116 -2.3259 4.5879 19 1 13.2741 -2.7979 5.2201 20 6 15.3649 -2.4924 4.8555 21 7 16.2624 -1.9185 4.0859 22 14 15.9085 -3.5320 6.3092 23 1 16.0751 -4.9422 5.8744 24 1 17.2011 -3.0183 6.8293 25 1 14.8814 -3.4621 7.3794 26 6 5.5774 1.0232 -1.2008 27 6 4.2007 1.1314 -1.1977 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 3.6601 1.1848 2.1335 34 1 6.1126 0.9810 2.1403 35 1 8.1839 1.2812 -0.6993 36 1 9.8763 -1.0298 2.6795 37 1 12.2616 -0.9890 1.1678 38 1 12.2330 0.4541 2.2095 39 1 14.2751 -1.1392 2.9531 40 1 17.2071 -2.0345 4.2730 41 1 6.1143 0.9813 -2.1370 42 1 3.6609 1.1737 -2.1321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326870760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:48 Heat of formation + Delta-G solvation = -142.481862 kcal Electronic energy + Delta-G solvation = -26746.312586 eV Core-core repulsion = 22497.847281 eV Total energy + Delta-G solvation = -4248.465306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25337 -40.85849 -40.11905 -39.45870 -38.45645 -36.59877 -36.10707 -35.30250 -33.39715 -32.05059 -31.99080 -29.88800 -28.14696 -26.98477 -26.25563 -24.82941 -24.03552 -22.36468 -21.50011 -21.39154 -20.29800 -19.85296 -18.66958 -18.05356 -17.47568 -17.31827 -17.21109 -17.04927 -16.92944 -16.72554 -16.31031 -16.25312 -15.76327 -15.52514 -15.37583 -15.12228 -14.95180 -14.44304 -14.34685 -14.03658 -13.88007 -13.61171 -13.55856 -13.14032 -13.04818 -12.92184 -12.50373 -12.46617 -12.33007 -12.13012 -12.07658 -11.58783 -11.50772 -10.90085 -10.62246 -10.60277 -10.46838 -10.10605 -9.94095 -9.25036 -8.52302 -6.02309 -0.20750 0.39966 0.44526 1.04392 1.35676 1.43356 1.55521 1.86788 1.94025 2.24302 2.42590 2.58853 3.03071 3.14865 3.20181 3.23851 3.82257 3.92435 4.01646 4.15357 4.21719 4.34633 4.35283 4.36358 4.42468 4.48764 4.56666 4.61056 4.68589 4.89946 4.92153 5.02349 5.12164 5.19980 5.34547 5.37794 5.58164 5.75380 5.90317 5.94665 6.16953 6.24213 6.46624 6.53470 6.72532 7.02800 7.41543 7.93211 8.64239 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.001682 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.779402 B =16639.310384 C =17460.578718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.103 3.897 4 C -0.113 4.113 5 C -0.087 4.087 6 C -0.142 4.142 7 C 0.130 3.870 8 N -0.630 5.630 9 C 0.514 3.486 10 O -0.518 6.518 11 C 0.515 3.485 12 O -0.532 6.532 13 N -0.677 5.677 14 C 0.119 3.881 15 C 0.428 3.572 16 O -0.626 6.626 17 N -0.555 5.555 18 C -0.340 4.340 19 H 0.084 0.916 20 C -0.007 4.007 21 N -0.913 5.913 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.137 4.137 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.434 0.566 36 H 0.419 0.581 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.401 0.599 40 H 0.280 0.720 41 H 0.157 0.843 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.384 10.484 -13.759 30.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.027 3.973 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.162 4.162 7 C 0.037 3.963 8 N -0.278 5.278 9 C 0.296 3.704 10 O -0.392 6.392 11 C 0.295 3.705 12 O -0.410 6.410 13 N -0.332 5.332 14 C -0.008 4.008 15 C 0.215 3.785 16 O -0.514 6.514 17 N -0.190 5.190 18 C -0.469 4.469 19 H 0.102 0.898 20 C -0.208 4.208 21 N -0.552 5.552 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.156 4.156 27 C -0.097 4.097 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.137 0.863 35 H 0.274 0.726 36 H 0.258 0.742 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.236 0.764 40 H 0.090 0.910 41 H 0.174 0.826 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.497 9.970 -13.249 30.414 hybrid contribution 0.851 -0.218 0.673 1.106 sum -24.646 9.752 -12.576 29.338 Atomic orbital electron populations 1.22931 0.79357 1.03669 1.01159 1.87951 1.21487 1.28523 1.95657 1.21426 0.88511 0.84844 1.02502 1.19882 0.95321 1.02734 0.93420 1.21085 0.92956 0.97671 0.98809 1.21176 0.95242 1.02368 0.97425 1.17983 0.81768 1.01350 0.95201 1.43020 1.05759 1.50972 1.28055 1.20104 0.88456 0.79608 0.82256 1.90825 1.66928 1.41793 1.39698 1.19790 0.88231 0.80426 0.82067 1.90759 1.66860 1.43623 1.39764 1.45529 1.07615 1.49708 1.30320 1.21032 0.79963 1.01800 0.97991 1.20417 0.83176 0.86382 0.88556 1.90520 1.52544 1.54839 1.53545 1.41787 1.05556 1.44450 1.27223 1.19728 0.92348 1.27911 1.06906 0.89778 1.26077 0.94982 0.98480 1.01238 1.69667 1.02393 1.43673 1.39494 0.84892 0.77742 0.78061 0.77436 1.19593 1.19498 1.19707 1.21192 0.94766 1.03095 0.96589 1.21181 0.93123 0.96825 0.98533 0.92525 0.89143 0.93073 0.90240 0.91337 0.84598 0.86321 0.72568 0.74187 0.87043 0.87039 0.76435 0.90997 0.82573 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.48 16 2 O -0.42 -7.03 10.69 -148.98 -1.59 -8.62 16 3 C 0.10 1.29 6.06 71.23 0.43 1.73 16 4 C -0.11 -1.87 5.51 -19.84 -0.11 -1.98 16 5 C -0.09 -1.70 9.69 22.25 0.22 -1.49 16 6 C -0.14 -3.34 8.65 22.40 0.19 -3.15 16 7 C 0.13 2.76 6.28 38.22 0.24 3.00 16 8 N -0.63 -13.48 5.32 -304.83 -1.62 -15.11 16 9 C 0.51 14.30 7.62 87.24 0.67 14.97 16 10 O -0.52 -17.18 14.16 -3.34 -0.05 -17.23 16 11 C 0.51 15.36 7.89 87.24 0.69 16.05 16 12 O -0.53 -16.35 16.48 -3.25 -0.05 -16.40 16 13 N -0.68 -22.56 5.52 -468.23 -2.59 -25.15 16 14 C 0.12 4.06 6.15 85.63 0.53 4.59 16 15 C 0.43 19.46 7.85 87.66 0.69 20.15 16 16 O -0.63 -33.02 15.24 -3.07 -0.05 -33.06 16 17 N -0.55 -27.25 5.29 -306.98 -1.62 -28.87 16 18 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 20 C -0.01 -0.34 5.50 84.92 0.47 0.12 16 21 N -0.91 -47.54 13.05 21.66 0.28 -47.26 16 22 Si 1.00 41.61 29.55 68.60 2.03 43.63 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C -0.14 -2.13 9.96 22.40 0.22 -1.90 16 27 C -0.08 -1.11 9.69 22.25 0.22 -0.90 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 33 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.12 3.20 6.42 -2.91 -0.02 3.19 16 35 H 0.43 7.17 8.30 -92.71 -0.77 6.41 16 36 H 0.42 15.28 6.91 -92.71 -0.64 14.64 16 37 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 39 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 40 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 41 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 42 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -69.97 374.21 0.21 -69.76 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -1.04 Total: 43.41 kcal Atomic # 6 Polarization: 28.39 SS G_CDS: 6.51 Total: 34.90 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -5.55 Total: -116.38 kcal Atomic # 8 Polarization: -73.58 SS G_CDS: -1.74 Total: -75.32 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -69.97 0.21 -69.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326870760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.725 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds