Wall clock time and date at job start Tue Mar 31 2020 19:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34677 * 117.00407 * 2 1 4 4 O 1.21433 * 120.00140 * 0.02562 * 3 2 1 5 5 C 1.48056 * 120.00295 * 179.97438 * 3 2 1 6 6 C 1.39242 * 119.68890 * 180.02562 * 5 3 2 7 7 C 1.38751 * 119.21551 * 179.97438 * 6 5 3 8 8 C 1.38349 * 118.56610 * 359.74134 * 7 6 5 9 9 C 1.39415 * 119.30155 * 0.50215 * 8 7 6 10 10 N 1.39239 * 119.62858 * 179.76694 * 9 8 7 11 11 C 1.34781 * 119.99999 * 185.09544 * 10 9 8 12 12 O 1.21358 * 119.99918 * 354.91609 * 11 10 9 13 13 C 1.49367 * 120.00311 * 174.90451 * 11 10 9 14 14 O 1.21358 * 119.99776 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00263 * 179.73002 * 13 11 10 16 16 C 1.46497 * 119.99818 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.47131 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47245 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47175 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00560 * 180.02562 * 19 18 17 22 22 N 1.31505 * 120.00322 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99464 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47259 * 89.99944 * 23 21 19 25 25 H 1.48499 * 109.47222 * 209.99944 * 23 21 19 26 26 H 1.48501 * 109.47359 * 330.00273 * 23 21 19 27 27 N 1.32039 * 120.73993 * 359.49048 * 9 8 7 28 28 H 1.08997 * 109.47326 * 300.00481 * 1 2 3 29 29 H 1.08997 * 109.46643 * 59.99902 * 1 2 3 30 30 H 1.08997 * 109.47556 * 180.02562 * 1 2 3 31 31 H 1.08009 * 120.39162 * 359.95547 * 6 5 3 32 32 H 1.07995 * 120.71693 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.34954 * 180.24937 * 8 7 6 34 34 H 0.97000 * 120.00237 * 5.10412 * 10 9 8 35 35 H 0.96993 * 120.00063 * 359.97438 * 15 13 11 36 36 H 1.08998 * 109.47408 * 299.99741 * 16 15 13 37 37 H 1.09001 * 109.47572 * 60.00389 * 16 15 13 38 38 H 1.09002 * 109.47510 * 300.00477 * 17 16 15 39 39 H 1.09002 * 109.46953 * 60.00265 * 17 16 15 40 40 H 1.08998 * 109.47504 * 300.00245 * 18 17 16 41 41 H 1.08998 * 109.46869 * 60.00828 * 18 17 16 42 42 H 0.97004 * 120.00326 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4022 2.2184 0.0005 5 6 3.5421 1.2774 0.0006 6 6 4.1675 2.5215 0.0011 7 6 5.5536 2.5826 0.0022 8 6 6.2681 1.3979 0.0082 9 6 5.5794 0.1857 0.0023 10 7 6.2916 -1.0107 0.0033 11 6 5.6379 -2.1843 -0.1060 12 8 4.4245 -2.2046 -0.1124 13 6 6.4067 -3.4598 -0.2195 14 8 7.6201 -3.4395 -0.2128 15 7 5.7530 -4.6338 -0.3234 16 6 6.5072 -5.8847 -0.4353 17 6 5.5331 -7.0601 -0.5383 18 6 6.3207 -8.3665 -0.6558 19 6 5.3612 -9.5241 -0.7579 20 1 4.2962 -9.3458 -0.7412 21 6 5.8430 -10.8109 -0.8728 22 7 5.0057 -11.8210 -0.9614 23 14 7.6851 -11.1193 -0.9010 24 1 8.1739 -11.3253 0.4860 25 1 7.9719 -12.3299 -1.7118 26 1 8.3740 -9.9479 -1.4997 27 7 4.2592 0.1596 0.0012 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.5805 3.4281 0.0004 32 1 6.0638 3.5344 0.0030 33 1 7.3480 1.4119 0.0132 34 1 7.2583 -0.9996 0.0828 35 1 4.7832 -4.6505 -0.3240 36 1 7.1340 -5.8527 -1.3264 37 1 7.1355 -6.0104 0.4466 38 1 4.9065 -7.0920 0.3531 39 1 4.9044 -6.9348 -1.4199 40 1 6.9469 -8.3343 -1.5474 41 1 6.9495 -8.4921 0.2256 42 1 5.3446 -12.7263 -1.0425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327291264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:43 Heat of formation + Delta-G solvation = -127.590585 kcal Electronic energy + Delta-G solvation = -27178.558955 eV Core-core repulsion = 22930.739383 eV Total energy + Delta-G solvation = -4247.819572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.39125 -41.65537 -40.76827 -39.48651 -37.66254 -37.27103 -36.24610 -35.12814 -33.78060 -33.30255 -31.70798 -29.36897 -28.89507 -26.82678 -25.94289 -24.71695 -23.35730 -22.57385 -22.27988 -21.34699 -20.09655 -19.18603 -18.82172 -18.74163 -17.90452 -17.58042 -17.32641 -17.19535 -17.08425 -16.69784 -16.39248 -16.30784 -15.98168 -15.47199 -15.12744 -14.83943 -14.77403 -14.73753 -14.21889 -14.16424 -13.81047 -13.62134 -13.29065 -13.08105 -12.93084 -12.73757 -12.69466 -12.12604 -12.10606 -11.90020 -11.86148 -11.77725 -11.59897 -11.32904 -11.11918 -11.03176 -10.74831 -10.32858 -10.30950 -9.60628 -8.27652 -6.32210 -0.66450 -0.09438 0.49208 1.03862 1.24419 1.39299 1.40936 1.52722 1.54340 2.04421 2.30307 2.38274 2.72226 3.00057 3.08084 3.34330 3.66546 3.83569 3.95882 4.01707 4.10071 4.18488 4.20792 4.28223 4.33316 4.48694 4.65191 4.78550 4.81005 4.87415 4.99592 5.00881 5.02353 5.15607 5.17840 5.45110 5.48375 5.56400 5.64469 5.67944 6.08536 6.28766 6.39444 6.55059 6.76138 6.78779 6.94141 7.32449 8.88929 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.002015 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.483906 B =13895.395641 C =15467.871093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.521 3.479 4 O -0.518 6.518 5 C 0.086 3.914 6 C -0.122 4.122 7 C -0.040 4.040 8 C -0.142 4.142 9 C 0.330 3.670 10 N -0.625 5.625 11 C 0.502 3.498 12 O -0.470 6.470 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.687 5.687 16 C 0.125 3.875 17 C -0.106 4.106 18 C -0.011 4.011 19 C -0.533 4.533 20 H 0.033 0.967 21 C 0.001 3.999 22 N -0.952 5.952 23 Si 0.952 3.048 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.242 1.242 27 N -0.473 5.473 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.165 0.835 32 H 0.201 0.799 33 H 0.191 0.809 34 H 0.444 0.556 35 H 0.418 0.582 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 35.339 2.677 35.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.365 3.635 4 O -0.407 6.407 5 C -0.050 4.050 6 C -0.144 4.144 7 C -0.065 4.065 8 C -0.164 4.164 9 C 0.097 3.903 10 N -0.276 5.276 11 C 0.282 3.718 12 O -0.339 6.339 13 C 0.291 3.709 14 O -0.416 6.416 15 N -0.339 5.339 16 C 0.002 3.998 17 C -0.144 4.144 18 C -0.048 4.048 19 C -0.571 4.571 20 H 0.052 0.948 21 C -0.196 4.196 22 N -0.593 5.593 23 Si 0.775 3.225 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.165 1.165 27 N -0.191 5.191 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.183 0.817 32 H 0.218 0.782 33 H 0.209 0.791 34 H 0.286 0.714 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.693 34.508 2.640 34.714 hybrid contribution 0.149 -0.367 -0.020 0.396 sum 2.842 34.141 2.620 34.359 Atomic orbital electron populations 1.23617 0.74390 1.05634 1.03002 1.86761 1.25063 1.31752 1.82655 1.21163 0.88632 0.81636 0.72101 1.90814 1.66361 1.36421 1.47121 1.19924 0.90152 0.90273 1.04646 1.22353 0.96969 0.97177 0.97906 1.21981 0.91749 1.00314 0.92503 1.22325 1.03960 0.89551 1.00596 1.18698 0.87875 0.86612 0.97137 1.43069 1.12376 1.02309 1.69815 1.20376 0.87784 0.85302 0.78333 1.90935 1.13678 1.86420 1.42848 1.19922 0.87444 0.85037 0.78508 1.90759 1.13593 1.87308 1.49976 1.45892 1.12145 1.05530 1.70328 1.21581 0.94523 0.80883 1.02804 1.21529 0.97847 0.92854 1.02130 1.19458 0.95738 0.92444 0.97209 1.21484 0.93855 0.91874 1.49861 0.94849 1.26057 1.03455 0.95880 0.94210 1.70071 1.37134 0.99818 1.52290 0.85637 0.79463 0.78452 0.78977 1.19185 1.21302 1.16530 1.67305 1.07202 1.31403 1.13191 0.91164 0.91217 0.85928 0.81725 0.78181 0.79144 0.71376 0.74486 0.90636 0.90533 0.91894 0.91942 0.95558 0.95661 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.96 10.38 -55.86 -0.58 -9.54 16 3 C 0.52 12.82 7.95 70.43 0.56 13.38 16 4 O -0.52 -13.18 16.10 20.05 0.32 -12.86 16 5 C 0.09 1.84 6.74 41.84 0.28 2.12 16 6 C -0.12 -1.51 9.63 22.63 0.22 -1.29 16 7 C -0.04 -0.21 10.16 22.42 0.23 0.02 16 8 C -0.14 -1.01 9.94 22.58 0.22 -0.79 16 9 C 0.33 5.73 7.42 133.16 0.99 6.72 16 10 N -0.62 -10.81 5.37 -309.76 -1.66 -12.48 16 11 C 0.50 12.20 7.84 87.24 0.68 12.88 16 12 O -0.47 -14.29 14.74 -3.27 -0.05 -14.34 16 13 C 0.51 13.10 7.89 87.24 0.69 13.79 16 14 O -0.54 -15.06 16.48 -3.27 -0.05 -15.11 16 15 N -0.69 -18.05 5.55 -464.50 -2.58 -20.63 16 16 C 0.12 3.62 5.67 86.38 0.49 4.11 16 17 C -0.11 -3.74 5.27 30.59 0.16 -3.58 16 18 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 19 C -0.53 -30.10 9.66 25.60 0.25 -29.86 16 20 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 21 C 0.00 0.03 5.47 84.66 0.46 0.49 16 22 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 23 Si 0.95 43.54 27.47 68.60 1.88 45.42 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 27 N -0.47 -11.52 7.64 -182.26 -1.39 -12.91 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.17 1.57 7.63 -2.91 -0.02 1.55 16 32 H 0.20 -0.81 8.06 -2.91 -0.02 -0.83 16 33 H 0.19 -0.25 8.06 -2.91 -0.02 -0.27 16 34 H 0.44 4.91 8.18 -92.71 -0.76 4.15 16 35 H 0.42 10.45 7.94 -92.71 -0.74 9.71 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 41 H 0.03 1.07 7.57 -2.39 -0.02 1.05 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.78 374.61 2.28 -79.50 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -0.46 Total: 12.95 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.55 Total: 19.32 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -5.33 Total: -105.35 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.36 Total: -51.85 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -81.78 2.28 -79.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327291264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.092 kcal (2) G-P(sol) polarization free energy of solvation -81.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds