Wall clock time and date at job start Tue Mar 31 2020 18:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38877 * 120.00210 * 2 1 4 4 C 1.38967 * 120.17109 * 354.46826 * 3 2 1 5 5 C 1.37960 * 120.05960 * 180.23296 * 4 3 2 6 6 C 1.38612 * 120.42362 * 359.48770 * 5 4 3 7 7 N 1.48012 * 119.82503 * 180.27938 * 6 5 4 8 8 O 1.21795 * 120.00407 * 180.23021 * 7 6 5 9 9 O 1.21805 * 119.99792 * 0.23478 * 7 6 5 10 10 C 1.37748 * 120.34979 * 0.51274 * 6 5 4 11 11 C 1.39733 * 119.93013 * 359.75118 * 10 6 5 12 12 C 1.47435 * 120.21164 * 179.97438 * 11 10 6 13 13 O 1.21596 * 120.00616 * 131.43519 * 12 11 10 14 14 N 1.34778 * 119.99495 * 311.44078 * 12 11 10 15 15 C 1.47024 * 125.64821 * 4.88513 * 14 12 11 16 16 C 1.54326 * 107.26938 * 181.02612 * 15 14 12 17 17 C 1.55154 * 102.94537 * 22.19215 * 16 15 14 18 18 O 1.42899 * 111.00722 * 82.57182 * 17 16 15 19 19 C 1.50699 * 111.00658 * 206.38674 * 17 16 15 20 20 H 1.07999 * 120.00053 * 0.02562 * 19 17 16 21 21 C 1.37875 * 120.00071 * 179.97438 * 19 17 16 22 22 N 1.31512 * 120.00047 * 0.02562 * 21 19 17 23 23 Si 1.86809 * 119.99994 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47194 * 59.99987 * 23 21 19 25 25 H 1.48500 * 109.46869 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46600 * 299.99818 * 23 21 19 27 27 C 1.47426 * 125.64828 * 184.58063 * 14 12 11 28 28 H 1.09001 * 109.46772 * 300.00089 * 1 2 3 29 29 H 1.08997 * 109.47239 * 59.99772 * 1 2 3 30 30 H 1.08995 * 109.46901 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99921 * 180.02562 * 2 1 3 32 32 H 1.08000 * 119.97003 * 359.95704 * 4 3 2 33 33 H 1.08001 * 119.78299 * 179.74881 * 5 4 3 34 34 H 1.08003 * 120.03510 * 179.76632 * 10 6 5 35 35 H 1.09002 * 109.88312 * 300.43814 * 15 14 12 36 36 H 1.08997 * 109.88584 * 61.45605 * 15 14 12 37 37 H 1.09002 * 110.72061 * 140.55734 * 16 15 14 38 38 H 1.09006 * 110.71843 * 263.82982 * 16 15 14 39 39 H 0.96694 * 114.00376 * 180.02562 * 18 17 16 40 40 H 0.97003 * 120.00195 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.36666 * 274.74612 * 27 14 12 42 42 H 1.08999 * 110.36731 * 37.06004 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1594 1.2027 0.0000 4 6 1.4731 2.4055 -0.1158 5 6 2.1656 3.5986 -0.1204 6 6 3.5464 3.6092 0.0007 7 7 4.2755 4.8973 0.0004 8 8 5.4891 4.9102 0.1024 9 8 3.6618 5.9445 -0.1017 10 6 4.2440 2.4271 0.1165 11 6 3.5579 1.2099 0.1173 12 6 4.2984 -0.0591 0.2404 13 8 3.9382 -0.8980 1.0435 14 7 5.3748 -0.2892 -0.5374 15 6 5.9776 0.6721 -1.4724 16 6 7.1646 -0.0377 -2.1573 17 6 6.8170 -1.5400 -1.9858 18 8 5.9050 -1.9735 -2.9970 19 6 8.0638 -2.3866 -1.9882 20 1 9.0321 -1.9215 -2.0999 21 6 7.9683 -3.7547 -1.8467 22 7 6.7892 -4.3210 -1.7101 23 14 9.5139 -4.8041 -1.8488 24 1 10.3960 -4.3883 -0.7290 25 1 9.1426 -6.2323 -1.6832 26 1 10.2313 -4.6257 -3.1367 27 6 6.1466 -1.5443 -0.5869 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 0.3969 2.4060 -0.2068 33 1 1.6281 4.5306 -0.2147 34 1 5.3202 2.4411 0.2068 35 1 5.2435 0.9720 -2.2203 36 1 6.3306 1.5477 -0.9276 37 1 7.2158 0.2283 -3.2131 38 1 8.1005 0.2017 -1.6523 39 1 5.6582 -2.9060 -2.9305 40 1 6.7221 -5.2836 -1.6102 41 1 6.9024 -1.5561 0.1985 42 1 5.4820 -2.4025 -0.4877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328568695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:18 Heat of formation + Delta-G solvation = -52.363041 kcal Electronic energy + Delta-G solvation = -29521.592068 eV Core-core repulsion = 25277.034608 eV Total energy + Delta-G solvation = -4244.557460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06740 -40.57368 -38.87861 -37.25382 -36.44535 -36.14805 -34.44071 -32.25469 -31.96248 -30.94352 -30.15422 -28.02857 -27.25392 -25.64171 -25.16274 -24.11911 -22.38008 -21.88729 -20.20613 -19.73607 -18.69131 -18.35831 -17.76639 -17.41478 -17.34893 -16.68346 -16.56667 -15.56564 -15.25243 -14.94795 -14.75680 -14.55849 -14.33384 -14.24626 -13.63679 -13.35795 -13.25032 -12.98232 -12.89387 -12.45847 -12.35892 -11.91334 -11.67900 -11.59866 -11.45381 -11.14175 -11.09498 -11.05207 -10.93054 -10.85998 -10.69539 -10.58906 -10.29727 -9.81960 -9.53656 -9.49658 -8.77953 -8.54072 -8.14416 -7.97450 -6.39498 -4.48656 -0.01461 0.61758 1.41526 1.52192 2.71450 2.95088 3.14706 3.19492 3.22151 3.24870 3.45125 4.17560 4.18857 4.34376 4.58789 4.65952 4.72926 4.87559 4.91969 5.02161 5.24313 5.27801 5.31626 5.34821 5.47326 5.55547 5.62763 5.72609 5.91091 5.95114 6.04044 6.36876 6.45260 6.60868 6.67052 6.70113 6.76715 7.09573 7.15444 7.20275 7.64161 7.76362 7.87591 7.94339 8.37479 8.55108 9.21082 9.33798 10.67946 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003538 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.431477 B = 7911.831787 C = 9288.892466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.713 5.713 3 C 0.307 3.693 4 C -0.204 4.204 5 C 0.008 3.992 6 C -0.116 4.116 7 N 0.044 4.956 8 O -0.175 6.175 9 O -0.180 6.180 10 C 0.024 3.976 11 C -0.197 4.197 12 C 0.570 3.430 13 O -0.547 6.547 14 N -0.595 5.595 15 C 0.098 3.902 16 C -0.118 4.118 17 C 0.251 3.749 18 O -0.584 6.584 19 C -0.539 4.539 20 H 0.068 0.932 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.092 3.908 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.419 0.581 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.386 0.614 40 H 0.272 0.728 41 H 0.065 0.935 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 10.141 2.076 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.337 5.337 3 C 0.193 3.807 4 C -0.227 4.227 5 C -0.012 4.012 6 C -0.202 4.202 7 N 0.559 4.441 8 O -0.388 6.388 9 O -0.392 6.392 10 C 0.004 3.996 11 C -0.206 4.206 12 C 0.357 3.643 13 O -0.427 6.427 14 N -0.325 5.325 15 C -0.025 4.025 16 C -0.156 4.156 17 C 0.210 3.790 18 O -0.394 6.394 19 C -0.577 4.577 20 H 0.087 0.913 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.029 4.029 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.258 0.742 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.238 0.762 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.175 9.478 2.364 16.401 hybrid contribution 1.085 -1.145 0.255 1.598 sum -12.091 8.333 2.619 14.916 Atomic orbital electron populations 1.21813 0.78927 1.03838 1.01805 1.44908 1.06948 1.06415 1.75446 1.17992 0.89628 0.87312 0.85788 1.20548 1.00714 0.89288 1.12171 1.20779 0.90785 0.99757 0.89925 1.20558 0.92659 0.83196 1.23823 1.43452 1.01072 1.02656 0.96946 1.94541 0.96044 1.94174 1.53998 1.94492 1.69428 1.20980 1.54291 1.20958 1.01579 0.88681 0.88406 1.19398 0.92131 0.93950 1.15110 1.17413 0.80200 0.85636 0.81015 1.90780 1.68299 1.47085 1.36515 1.48731 1.27577 1.17344 1.38850 1.22223 0.96462 0.91882 0.91943 1.22656 0.95969 0.96502 1.00470 1.19620 0.87404 0.89298 0.82693 1.86073 1.66216 1.33201 1.53896 1.21474 0.92877 0.91793 1.51525 0.91336 1.25073 0.96879 0.98054 0.93113 1.69539 1.23101 1.11928 1.49086 0.86420 0.82537 0.78845 0.78914 1.19907 1.21052 1.19903 1.23456 0.94241 0.83817 1.01340 0.91855 0.91874 0.89749 0.74168 0.83342 0.82908 0.82514 0.91974 0.92187 0.90425 0.90091 0.76191 0.91785 0.91632 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 9.97 59.85 0.60 1.14 16 2 N -0.71 -8.05 5.68 -65.20 -0.37 -8.42 16 3 C 0.31 3.76 6.63 -83.61 -0.55 3.20 16 4 C -0.20 -1.92 9.30 -39.41 -0.37 -2.29 16 5 C 0.01 0.08 9.54 -39.55 -0.38 -0.30 16 6 C -0.12 -1.50 6.84 -79.99 -0.55 -2.05 16 7 N 0.04 0.65 4.45 33.94 0.15 0.80 16 8 O -0.17 -2.75 18.43 -29.46 -0.54 -3.30 16 9 O -0.18 -2.64 18.43 -29.46 -0.54 -3.18 16 10 C 0.02 0.33 8.02 -39.20 -0.31 0.02 16 11 C -0.20 -2.90 5.41 -104.80 -0.57 -3.46 16 12 C 0.57 10.41 6.80 -12.51 -0.09 10.33 16 13 O -0.55 -11.36 15.88 5.28 0.08 -11.28 16 14 N -0.59 -11.38 3.32 -171.64 -0.57 -11.95 16 15 C 0.10 1.66 5.68 -3.06 -0.02 1.64 16 16 C -0.12 -2.24 6.12 -24.90 -0.15 -2.40 16 17 C 0.25 5.75 0.89 -89.50 -0.08 5.67 16 18 O -0.58 -14.21 13.19 -35.23 -0.46 -14.68 16 19 C -0.54 -13.41 8.25 -34.44 -0.28 -13.69 16 20 H 0.07 1.67 7.76 -52.49 -0.41 1.26 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 22 N -0.90 -22.81 10.72 55.43 0.59 -22.21 16 23 Si 0.91 19.67 29.54 -169.99 -5.02 14.65 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C 0.09 2.07 5.63 -2.41 -0.01 2.06 16 28 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 7.73 -51.93 -0.40 -0.06 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.42 5.68 6.78 -40.82 -0.28 5.40 16 32 H 0.15 0.92 6.72 -52.49 -0.35 0.57 16 33 H 0.15 1.22 7.59 -52.49 -0.40 0.82 16 34 H 0.16 2.15 5.58 -52.48 -0.29 1.85 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.88 6.03 -51.93 -0.31 0.57 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.44 8.01 -51.93 -0.42 1.03 16 39 H 0.39 9.73 6.93 45.56 0.32 10.04 16 40 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 41 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 42 H 0.08 2.08 7.69 -51.93 -0.40 1.68 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -28.94 355.07 -8.37 -37.31 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -4.18 Total: 15.33 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.86 Total: 1.58 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.20 Total: -41.78 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.47 Total: -32.43 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.94 -8.37 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.054 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds