Wall clock time and date at job start Tue Mar 31 2020 18:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38877 * 120.00210 * 2 1 4 4 C 1.38967 * 120.17109 * 354.46826 * 3 2 1 5 5 C 1.37960 * 120.05960 * 180.23296 * 4 3 2 6 6 C 1.38612 * 120.42362 * 359.48770 * 5 4 3 7 7 N 1.48012 * 119.82503 * 180.27938 * 6 5 4 8 8 O 1.21795 * 120.00407 * 180.23021 * 7 6 5 9 9 O 1.21805 * 119.99792 * 0.23478 * 7 6 5 10 10 C 1.37748 * 120.34979 * 0.51274 * 6 5 4 11 11 C 1.39733 * 119.93013 * 359.75118 * 10 6 5 12 12 C 1.47435 * 120.21164 * 179.97438 * 11 10 6 13 13 O 1.21596 * 120.00616 * 131.43519 * 12 11 10 14 14 N 1.34778 * 119.99495 * 311.44078 * 12 11 10 15 15 C 1.47024 * 125.64821 * 4.88513 * 14 12 11 16 16 C 1.54326 * 107.26938 * 181.02612 * 15 14 12 17 17 C 1.55154 * 102.94537 * 22.19215 * 16 15 14 18 18 O 1.42899 * 111.00722 * 82.57182 * 17 16 15 19 19 C 1.50699 * 111.00658 * 206.38674 * 17 16 15 20 20 H 1.07999 * 120.00053 * 0.02562 * 19 17 16 21 21 C 1.37875 * 120.00071 * 179.97438 * 19 17 16 22 22 N 1.31512 * 120.00047 * 0.02562 * 21 19 17 23 23 Si 1.86809 * 119.99994 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47194 * 59.99987 * 23 21 19 25 25 H 1.48500 * 109.46869 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46600 * 299.99818 * 23 21 19 27 27 C 1.47426 * 125.64828 * 184.58063 * 14 12 11 28 28 H 1.09001 * 109.46772 * 300.00089 * 1 2 3 29 29 H 1.08997 * 109.47239 * 59.99772 * 1 2 3 30 30 H 1.08995 * 109.46901 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99921 * 180.02562 * 2 1 3 32 32 H 1.08000 * 119.97003 * 359.95704 * 4 3 2 33 33 H 1.08001 * 119.78299 * 179.74881 * 5 4 3 34 34 H 1.08003 * 120.03510 * 179.76632 * 10 6 5 35 35 H 1.09002 * 109.88312 * 300.43814 * 15 14 12 36 36 H 1.08997 * 109.88584 * 61.45605 * 15 14 12 37 37 H 1.09002 * 110.72061 * 140.55734 * 16 15 14 38 38 H 1.09006 * 110.71843 * 263.82982 * 16 15 14 39 39 H 0.96694 * 114.00376 * 180.02562 * 18 17 16 40 40 H 0.97003 * 120.00195 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.36666 * 274.74612 * 27 14 12 42 42 H 1.08999 * 110.36731 * 37.06004 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1594 1.2027 0.0000 4 6 1.4731 2.4055 -0.1158 5 6 2.1656 3.5986 -0.1204 6 6 3.5464 3.6092 0.0007 7 7 4.2755 4.8973 0.0004 8 8 5.4891 4.9102 0.1024 9 8 3.6618 5.9445 -0.1017 10 6 4.2440 2.4271 0.1165 11 6 3.5579 1.2099 0.1173 12 6 4.2984 -0.0591 0.2404 13 8 3.9382 -0.8980 1.0435 14 7 5.3748 -0.2892 -0.5374 15 6 5.9776 0.6721 -1.4724 16 6 7.1646 -0.0377 -2.1573 17 6 6.8170 -1.5400 -1.9858 18 8 5.9050 -1.9735 -2.9970 19 6 8.0638 -2.3866 -1.9882 20 1 9.0321 -1.9215 -2.0999 21 6 7.9683 -3.7547 -1.8467 22 7 6.7892 -4.3210 -1.7101 23 14 9.5139 -4.8041 -1.8488 24 1 10.3960 -4.3883 -0.7290 25 1 9.1426 -6.2323 -1.6832 26 1 10.2313 -4.6257 -3.1367 27 6 6.1466 -1.5443 -0.5869 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 0.3969 2.4060 -0.2068 33 1 1.6281 4.5306 -0.2147 34 1 5.3202 2.4411 0.2068 35 1 5.2435 0.9720 -2.2203 36 1 6.3306 1.5477 -0.9276 37 1 7.2158 0.2283 -3.2131 38 1 8.1005 0.2017 -1.6523 39 1 5.6582 -2.9060 -2.9305 40 1 6.7221 -5.2836 -1.6102 41 1 6.9024 -1.5561 0.1985 42 1 5.4820 -2.4025 -0.4877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328568695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:18 Heat of formation + Delta-G solvation = -72.028480 kcal Electronic energy + Delta-G solvation = -29522.444826 eV Core-core repulsion = 25277.034608 eV Total energy + Delta-G solvation = -4245.410218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.13577 -41.77883 -40.19895 -38.81713 -37.54976 -37.05633 -36.12407 -34.18758 -33.09028 -31.84707 -31.65838 -29.67799 -28.12481 -27.31937 -26.03930 -25.47232 -23.73709 -22.83582 -21.58797 -21.31946 -19.78445 -19.56839 -19.18113 -18.72000 -18.48637 -18.06370 -17.52983 -17.16050 -16.78605 -16.47476 -16.09643 -15.54191 -15.40652 -15.26130 -14.93742 -14.75083 -14.72345 -14.29420 -13.87414 -13.81810 -13.53014 -13.37459 -13.16746 -12.85545 -12.84446 -12.60490 -12.54831 -12.34824 -12.29485 -12.21132 -12.19381 -12.12565 -11.71680 -11.33088 -11.18158 -10.67407 -10.53180 -10.36050 -9.63257 -8.99797 -8.29757 -6.45761 -1.04928 -0.34446 0.40651 0.50031 1.40910 1.43391 1.44307 1.51228 1.89105 2.11774 2.30807 2.36663 2.96758 3.15599 3.33917 3.64705 3.70977 3.75508 3.86774 4.04008 4.09375 4.23612 4.28548 4.38664 4.45135 4.54966 4.58781 4.65382 4.71251 4.72795 4.85390 4.93290 5.01238 5.09289 5.17481 5.32074 5.39584 5.41739 5.72334 5.88937 5.99864 6.14766 6.45887 6.61714 6.63444 6.90925 7.26674 7.35992 8.75938 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003538 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.431477 B = 7911.831787 C = 9288.892466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.718 5.718 3 C 0.304 3.696 4 C -0.182 4.182 5 C 0.022 3.978 6 C -0.126 4.126 7 N 0.046 4.954 8 O -0.219 6.219 9 O -0.167 6.167 10 C 0.026 3.974 11 C -0.221 4.221 12 C 0.570 3.430 13 O -0.580 6.580 14 N -0.601 5.601 15 C 0.104 3.896 16 C -0.115 4.115 17 C 0.236 3.764 18 O -0.589 6.589 19 C -0.559 4.559 20 H 0.069 0.931 21 C 0.030 3.970 22 N -0.916 5.916 23 Si 0.963 3.037 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.107 3.893 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.405 0.595 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.378 0.622 40 H 0.272 0.728 41 H 0.049 0.951 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 11.859 1.746 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C 0.188 3.812 4 C -0.205 4.205 5 C 0.001 3.999 6 C -0.214 4.214 7 N 0.557 4.443 8 O -0.422 6.422 9 O -0.384 6.384 10 C 0.005 3.995 11 C -0.230 4.230 12 C 0.360 3.640 13 O -0.462 6.462 14 N -0.331 5.331 15 C -0.018 4.018 16 C -0.152 4.152 17 C 0.196 3.804 18 O -0.398 6.398 19 C -0.597 4.597 20 H 0.087 0.913 21 C -0.171 4.171 22 N -0.556 5.556 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.015 4.015 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.241 0.759 32 H 0.209 0.791 33 H 0.201 0.799 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.229 0.771 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.128 11.211 2.033 18.939 hybrid contribution 1.529 -1.708 0.372 2.322 sum -13.600 9.502 2.405 16.764 Atomic orbital electron populations 1.22166 0.76089 1.05243 1.03691 1.45241 1.08818 1.05554 1.74159 1.18270 0.88790 0.88762 0.85377 1.20939 1.02420 0.87370 1.09785 1.21180 0.89442 1.01327 0.87916 1.20652 0.93621 0.81879 1.25205 1.43664 1.00964 1.03159 0.96535 1.94550 0.96813 1.94466 1.56332 1.94458 1.69183 1.21582 1.53220 1.20809 1.01344 0.88879 0.88450 1.19061 0.93186 0.92058 1.18720 1.17970 0.79559 0.86625 0.79853 1.90745 1.68982 1.48767 1.37755 1.48730 1.28095 1.16544 1.39735 1.22275 0.95807 0.91796 0.91933 1.22661 0.97300 0.93804 1.01455 1.19820 0.86648 0.91445 0.82522 1.86061 1.66608 1.32579 1.54554 1.21805 0.93668 0.92540 1.51693 0.91261 1.25771 0.99326 0.99146 0.92854 1.69641 1.24518 1.11970 1.49479 0.85521 0.79467 0.77265 0.78887 1.19629 1.20961 1.19519 1.22967 0.93417 0.84406 1.00746 0.90060 0.89562 0.88916 0.75881 0.79104 0.79875 0.83324 0.91050 0.89627 0.89650 0.89084 0.77094 0.91887 0.93271 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 9.97 127.77 1.27 1.98 16 2 N -0.72 -14.86 5.68 -360.21 -2.05 -16.91 16 3 C 0.30 6.72 6.63 38.71 0.26 6.98 16 4 C -0.18 -2.61 9.30 22.38 0.21 -2.40 16 5 C 0.02 0.35 9.54 22.29 0.21 0.56 16 6 C -0.13 -2.99 6.84 36.35 0.25 -2.75 16 7 N 0.05 1.29 4.45 -46.53 -0.21 1.08 16 8 O -0.22 -6.87 18.43 18.89 0.35 -6.52 16 9 O -0.17 -4.50 18.43 18.88 0.35 -4.15 16 10 C 0.03 0.68 8.02 22.52 0.18 0.86 16 11 C -0.22 -6.33 5.41 -19.98 -0.11 -6.44 16 12 C 0.57 21.29 6.80 86.67 0.59 21.87 16 13 O -0.58 -25.06 15.88 -4.02 -0.06 -25.12 16 14 N -0.60 -23.56 3.32 -815.20 -2.71 -26.27 16 15 C 0.10 3.49 5.68 86.73 0.49 3.98 16 16 C -0.11 -4.33 6.12 31.78 0.19 -4.14 16 17 C 0.24 11.10 0.89 -10.07 -0.01 11.09 16 18 O -0.59 -29.42 13.19 -148.98 -1.97 -31.39 16 19 C -0.56 -28.37 8.25 25.60 0.21 -28.16 16 20 H 0.07 3.41 7.76 -2.91 -0.02 3.39 16 21 C 0.03 1.51 5.30 84.65 0.45 1.96 16 22 N -0.92 -48.01 10.72 21.45 0.23 -47.78 16 23 Si 0.96 40.74 29.54 68.60 2.03 42.76 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 C 0.11 5.03 5.63 86.93 0.49 5.52 16 28 H 0.08 0.57 8.12 -2.39 -0.02 0.56 16 29 H 0.09 0.52 7.73 -2.39 -0.02 0.50 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.41 10.91 6.78 -92.71 -0.63 10.28 16 32 H 0.19 1.12 6.72 -2.91 -0.02 1.10 16 33 H 0.18 1.91 7.59 -2.91 -0.02 1.88 16 34 H 0.15 4.07 5.58 -2.91 -0.02 4.05 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.09 2.45 6.03 -2.39 -0.01 2.43 16 37 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.09 3.22 8.01 -2.38 -0.02 3.20 16 39 H 0.38 19.84 6.93 -74.06 -0.51 19.32 16 40 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 41 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 42 H 0.05 2.64 7.69 -2.39 -0.02 2.62 16 Total: -1.00 -65.50 355.07 0.61 -64.89 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: -0.04 Total: 38.47 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 4.69 Total: 10.94 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -4.73 Total: -89.88 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -1.33 Total: -67.18 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -65.50 0.61 -64.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.141 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds