Wall clock time and date at job start Tue Mar 31 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38871 * 120.00263 * 2 1 4 4 C 1.38960 * 120.17610 * 354.42875 * 3 2 1 5 5 C 1.37952 * 120.06523 * 179.97438 * 4 3 2 6 6 C 1.38609 * 120.42250 * 0.02899 * 5 4 3 7 7 N 1.48022 * 119.82189 * 179.97438 * 6 5 4 8 8 O 1.21795 * 120.00263 * 359.97438 * 7 6 5 9 9 O 1.21805 * 119.99791 * 179.97438 * 7 6 5 10 10 C 1.37744 * 120.35359 * 359.97438 * 6 5 4 11 11 C 1.39742 * 119.92659 * 359.70391 * 10 6 5 12 12 C 1.47432 * 120.20823 * 180.30027 * 11 10 6 13 13 O 1.21598 * 119.99820 * 130.78402 * 12 11 10 14 14 N 1.34783 * 119.99761 * 310.78264 * 12 11 10 15 15 C 1.47023 * 125.64911 * 4.37919 * 14 12 11 16 16 C 1.54333 * 107.26242 * 178.85107 * 15 14 12 17 17 C 1.55159 * 103.02083 * 338.13591 * 16 15 14 18 18 O 1.42898 * 111.00714 * 277.23617 * 17 16 15 19 19 C 1.50700 * 111.00103 * 153.38389 * 17 16 15 20 20 H 1.08004 * 120.00067 * 272.88623 * 19 17 16 21 21 C 1.37877 * 120.00191 * 92.88915 * 19 17 16 22 22 N 1.31516 * 120.00147 * 172.16728 * 21 19 17 23 23 Si 1.86799 * 119.99707 * 352.17243 * 21 19 17 24 24 H 1.48506 * 109.47025 * 85.03812 * 23 21 19 25 25 H 1.48506 * 109.46993 * 205.03432 * 23 21 19 26 26 H 1.48497 * 109.47157 * 325.03631 * 23 21 19 27 27 C 1.47423 * 125.64427 * 184.68792 * 14 12 11 28 28 H 1.09002 * 109.47400 * 180.27060 * 1 2 3 29 29 H 1.09002 * 109.47164 * 300.27475 * 1 2 3 30 30 H 1.09004 * 109.46971 * 60.27621 * 1 2 3 31 31 H 0.97004 * 119.99628 * 179.72318 * 2 1 3 32 32 H 1.08003 * 119.96376 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.78792 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.03895 * 180.02562 * 10 6 5 35 35 H 1.09000 * 109.87706 * 298.39403 * 15 14 12 36 36 H 1.09003 * 109.87842 * 59.55946 * 15 14 12 37 37 H 1.09002 * 110.84656 * 219.67193 * 16 15 14 38 38 H 1.08994 * 110.66978 * 96.52305 * 16 15 14 39 39 H 0.96696 * 113.99848 * 168.54507 * 18 17 16 40 40 H 0.96998 * 119.99860 * 180.02562 * 22 21 19 41 41 H 1.09000 * 110.36769 * 322.92923 * 27 14 12 42 42 H 1.09000 * 110.36868 * 85.14137 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1594 1.2026 0.0000 4 6 1.4733 2.4054 -0.1166 5 6 2.1653 3.5987 -0.1158 6 6 3.5465 3.6090 0.0003 7 7 4.2757 4.8972 -0.0010 8 8 3.6622 5.9442 -0.1043 9 8 5.4894 4.9100 0.1014 10 6 4.2441 2.4270 0.1168 11 6 3.5573 1.2101 0.1244 12 6 4.2971 -0.0584 0.2555 13 8 3.9429 -0.8873 1.0716 14 7 5.3660 -0.2993 -0.5295 15 6 5.9552 0.6463 -1.4888 16 6 7.1711 -0.0526 -2.1329 17 6 7.5338 -1.1488 -1.0964 18 8 8.3381 -0.6126 -0.0439 19 6 8.2227 -2.3131 -1.7603 20 1 7.6382 -3.1172 -2.1824 21 6 9.5993 -2.3518 -1.8289 22 7 10.2057 -3.4333 -2.2673 23 14 10.6028 -0.8680 -1.2990 24 1 10.8175 -0.9146 0.1697 25 1 11.9161 -0.8856 -1.9920 26 1 9.8727 0.3756 -1.6534 27 6 6.1341 -1.5569 -0.5728 28 1 -0.3634 -1.0277 0.0049 29 1 -0.3633 0.5181 0.8875 30 1 -0.3633 0.5096 -0.8925 31 1 1.9499 -0.8401 0.0041 32 1 0.3970 2.4059 -0.2071 33 1 1.6275 4.5309 -0.2063 34 1 5.3202 2.4410 0.2074 35 1 5.2230 0.9015 -2.2549 36 1 6.2803 1.5475 -0.9688 37 1 7.9978 0.6464 -2.2601 38 1 6.8962 -0.5005 -3.0877 39 1 8.4442 -1.2067 0.7116 40 1 11.1741 -3.4606 -2.3152 41 1 6.2133 -1.9877 0.4253 42 1 5.6638 -2.2654 -1.2547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328568707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:21 Heat of formation + Delta-G solvation = -68.709375 kcal Electronic energy + Delta-G solvation = -29535.459874 eV Core-core repulsion = 25290.193583 eV Total energy + Delta-G solvation = -4245.266291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.14557 -41.85056 -40.35939 -39.00870 -37.56408 -37.09981 -36.37401 -34.48375 -33.16533 -31.86508 -31.73947 -30.03743 -28.14359 -27.44633 -26.05150 -25.37571 -23.72483 -22.86471 -21.73353 -21.37503 -19.86465 -19.71165 -19.35563 -18.70154 -18.49202 -18.18404 -17.52820 -17.28046 -16.87677 -16.70125 -16.20135 -15.69718 -15.51528 -15.26418 -15.20337 -14.86985 -14.54086 -14.34467 -14.08151 -13.86727 -13.80013 -13.40989 -13.35163 -13.08955 -12.85719 -12.79977 -12.58562 -12.32678 -12.25104 -12.21558 -12.19081 -12.02092 -11.72131 -11.33008 -11.20684 -10.68160 -10.54710 -10.43630 -9.74029 -9.00491 -8.36890 -6.49735 -1.07729 -0.36414 0.38204 0.49625 1.37965 1.49225 1.52562 1.71053 1.79512 2.10616 2.27740 2.43174 2.93543 3.12235 3.31189 3.45413 3.62805 3.72847 3.75753 3.86038 4.06049 4.13531 4.27613 4.31154 4.38964 4.43639 4.53944 4.60630 4.68673 4.72216 4.74281 4.88390 4.89509 5.06575 5.08813 5.12647 5.31166 5.39464 5.49103 5.86621 6.02344 6.16972 6.35602 6.56021 6.59780 6.83277 6.89010 7.28479 8.75710 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003886 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.898231 B = 7203.936651 C = 8897.910449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.714 5.714 3 C 0.309 3.691 4 C -0.181 4.181 5 C 0.022 3.978 6 C -0.127 4.127 7 N 0.045 4.955 8 O -0.163 6.163 9 O -0.228 6.228 10 C 0.025 3.975 11 C -0.221 4.221 12 C 0.578 3.422 13 O -0.571 6.571 14 N -0.599 5.599 15 C 0.103 3.897 16 C -0.121 4.121 17 C 0.216 3.784 18 O -0.562 6.562 19 C -0.548 4.548 20 H 0.050 0.950 21 C 0.032 3.968 22 N -0.933 5.933 23 Si 1.003 2.997 24 H -0.285 1.285 25 H -0.337 1.337 26 H -0.260 1.260 27 C 0.098 3.902 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.408 0.592 32 H 0.192 0.808 33 H 0.182 0.818 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.381 0.619 40 H 0.268 0.732 41 H 0.068 0.932 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.729 11.829 2.975 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.335 5.335 3 C 0.192 3.808 4 C -0.204 4.204 5 C 0.001 3.999 6 C -0.214 4.214 7 N 0.555 4.445 8 O -0.382 6.382 9 O -0.429 6.429 10 C 0.005 3.995 11 C -0.230 4.230 12 C 0.368 3.632 13 O -0.453 6.453 14 N -0.330 5.330 15 C -0.019 4.019 16 C -0.159 4.159 17 C 0.175 3.825 18 O -0.371 6.371 19 C -0.585 4.585 20 H 0.068 0.932 21 C -0.169 4.169 22 N -0.571 5.571 23 Si 0.837 3.163 24 H -0.212 1.212 25 H -0.269 1.269 26 H -0.186 1.186 27 C -0.024 4.024 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.244 0.756 32 H 0.209 0.791 33 H 0.199 0.801 34 H 0.161 0.839 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.231 0.769 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.329 11.124 2.997 26.919 hybrid contribution 1.784 -0.510 0.499 1.921 sum -22.545 10.613 3.496 25.162 Atomic orbital electron populations 1.22171 0.76103 1.05354 1.03635 1.45189 1.08748 1.05417 1.74124 1.18190 0.88621 0.88766 0.85214 1.20943 1.02445 0.87394 1.09641 1.21183 0.89297 1.01504 0.87904 1.20686 0.93645 0.81782 1.25280 1.43747 1.00975 1.03293 0.96503 1.94449 1.69118 1.21777 1.52866 1.94581 0.96912 1.94533 1.56847 1.20822 1.01197 0.89171 0.88356 1.19013 0.93142 0.91962 1.18894 1.17811 0.79369 0.86342 0.79662 1.90768 1.68746 1.49174 1.36598 1.48531 1.28712 1.16480 1.39301 1.22302 0.95613 0.92269 0.91713 1.22918 0.96496 0.97785 0.98731 1.20145 0.86112 0.91240 0.84980 1.86066 1.71363 1.48513 1.31114 1.21313 0.92107 1.06003 1.39121 0.93166 1.25758 0.99228 0.98285 0.93626 1.70071 1.10153 1.29474 1.47375 0.84811 0.74180 0.80217 0.77131 1.21241 1.26925 1.18591 1.22867 0.92551 0.85670 1.01343 0.88660 0.90335 0.89567 0.75603 0.79059 0.80072 0.83850 0.89360 0.90875 0.90364 0.89173 0.76944 0.92370 0.91380 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 9.96 127.77 1.27 1.65 16 2 N -0.71 -10.56 5.68 -360.21 -2.05 -12.61 16 3 C 0.31 5.32 6.63 38.71 0.26 5.57 16 4 C -0.18 -1.97 9.30 22.37 0.21 -1.76 16 5 C 0.02 0.30 9.54 22.29 0.21 0.51 16 6 C -0.13 -2.79 6.84 36.35 0.25 -2.55 16 7 N 0.05 1.24 4.45 -46.53 -0.21 1.04 16 8 O -0.16 -4.32 18.43 18.89 0.35 -3.98 16 9 O -0.23 -7.36 18.43 18.88 0.35 -7.01 16 10 C 0.03 0.61 8.00 22.52 0.18 0.79 16 11 C -0.22 -5.29 5.39 -19.98 -0.11 -5.40 16 12 C 0.58 17.67 6.76 86.66 0.59 18.25 16 13 O -0.57 -20.22 15.89 -4.02 -0.06 -20.29 16 14 N -0.60 -19.22 3.33 -815.62 -2.71 -21.93 16 15 C 0.10 3.05 5.79 86.73 0.50 3.55 16 16 C -0.12 -4.38 5.89 31.79 0.19 -4.19 16 17 C 0.22 8.96 0.70 -10.15 -0.01 8.95 16 18 O -0.56 -23.15 8.66 -148.98 -1.29 -24.44 16 19 C -0.55 -28.28 8.88 25.60 0.23 -28.05 16 20 H 0.05 2.86 8.00 -2.91 -0.02 2.83 16 21 C 0.03 1.73 5.46 84.65 0.46 2.19 16 22 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 23 Si 1.00 47.52 24.84 68.60 1.70 49.22 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 25 H -0.34 -16.54 7.11 99.48 0.71 -15.83 16 26 H -0.26 -11.81 5.55 99.48 0.55 -11.26 16 27 C 0.10 3.64 6.09 86.86 0.53 4.17 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.26 8.12 -2.39 -0.02 0.24 16 30 H 0.09 0.14 7.74 -2.38 -0.02 0.12 16 31 H 0.41 7.86 6.82 -92.71 -0.63 7.23 16 32 H 0.19 0.49 6.72 -2.91 -0.02 0.47 16 33 H 0.18 1.57 7.59 -2.91 -0.02 1.55 16 34 H 0.14 3.87 5.65 -2.91 -0.02 3.85 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 2.11 5.93 -2.39 -0.01 2.10 16 37 H 0.08 2.93 6.61 -2.39 -0.02 2.92 16 38 H 0.09 3.17 8.03 -2.39 -0.02 3.15 16 39 H 0.38 14.14 9.01 -74.06 -0.67 13.47 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.07 2.60 7.98 -2.39 -0.02 2.58 16 42 H 0.07 2.72 7.99 -2.39 -0.02 2.71 16 Total: -1.00 -71.76 349.44 0.79 -70.97 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.35 Total: 20.51 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.76 Total: 3.70 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -4.67 Total: -88.69 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -0.66 Total: -55.71 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.70 Total: 49.22 kcal Total: -71.76 0.79 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328568707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.264 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds