Wall clock time and date at job start Tue Mar 31 2020 19:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35808 * 117.00183 * 2 1 4 4 C 1.39079 * 120.87043 * 0.24550 * 3 2 1 5 5 C 1.38070 * 119.16920 * 180.27854 * 4 3 2 6 6 N 1.31947 * 120.97513 * 359.71906 * 5 4 3 7 7 C 1.31921 * 121.92497 * 0.02562 * 6 5 4 8 8 C 1.38646 * 120.71457 * 0.02562 * 7 6 5 9 9 N 1.39918 * 120.51932 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00332 * 335.26030 * 9 8 7 11 11 O 1.21391 * 120.00250 * 354.44956 * 10 9 8 12 12 C 1.49344 * 120.00257 * 174.44906 * 10 9 8 13 13 O 1.21367 * 119.99514 * 0.02562 * 12 10 9 14 14 N 1.34771 * 119.99879 * 179.97438 * 12 10 9 15 15 C 1.47423 * 125.65248 * 359.96044 * 14 12 10 16 16 C 1.54911 * 104.83314 * 204.16339 * 15 14 12 17 17 C 1.55152 * 101.58123 * 322.99120 * 16 15 14 18 18 O 1.42903 * 110.71863 * 277.13709 * 17 16 15 19 19 C 1.50699 * 110.87215 * 153.93664 * 17 16 15 20 20 H 1.08001 * 119.99902 * 2.54414 * 19 17 16 21 21 C 1.37884 * 120.00018 * 182.54707 * 19 17 16 22 22 N 1.31510 * 120.00069 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 119.99772 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47315 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47321 * 120.00203 * 23 21 19 26 26 H 1.48508 * 109.46761 * 239.99649 * 23 21 19 27 27 C 1.47024 * 125.64371 * 180.02562 * 14 12 10 28 28 H 1.09004 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47108 * 299.99964 * 1 2 3 30 30 H 1.08998 * 109.46860 * 59.99954 * 1 2 3 31 31 H 1.07997 * 120.41408 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.51125 * 179.74756 * 5 4 3 33 33 H 1.08004 * 119.64043 * 179.97438 * 7 6 5 34 34 H 0.97003 * 119.99790 * 155.25953 * 9 8 7 35 35 H 1.08999 * 110.36479 * 323.00022 * 15 14 12 36 36 H 1.08998 * 110.36699 * 85.32427 * 15 14 12 37 37 H 1.09000 * 111.00288 * 204.91359 * 16 15 14 38 38 H 1.09001 * 111.00137 * 81.06398 * 16 15 14 39 39 H 0.96708 * 113.99704 * 174.97811 * 18 17 16 40 40 H 0.97000 * 120.00078 * 179.97438 * 22 21 19 41 41 H 1.08993 * 109.88613 * 59.48817 * 27 14 12 42 42 H 1.08999 * 109.87993 * 298.31924 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3059 2.3878 0.0051 5 6 1.9690 3.5989 -0.0009 6 7 3.2874 3.6512 -0.0059 7 6 4.0289 2.5601 -0.0058 8 6 3.4410 1.3044 -0.0010 9 7 4.2314 0.1499 -0.0015 10 6 5.4850 0.1915 -0.4946 11 8 5.8936 1.2017 -1.0295 12 6 6.3715 -1.0052 -0.3830 13 8 5.9628 -2.0153 0.1514 14 7 7.6248 -0.9637 -0.8766 15 6 8.2458 0.1922 -1.5488 16 6 9.3577 -0.4169 -2.4389 17 6 9.8792 -1.5695 -1.5407 18 8 10.8250 -1.0797 -0.5880 19 6 10.4860 -2.6680 -2.3752 20 1 10.5478 -2.5597 -3.4479 21 6 10.9623 -3.8112 -1.7690 22 7 10.8875 -3.9428 -0.4627 23 14 11.7151 -5.1724 -2.8033 24 1 11.6814 -4.7820 -4.2356 25 1 13.1221 -5.3930 -2.3829 26 1 10.9396 -6.4246 -2.6136 27 6 8.5989 -2.0642 -0.8352 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2264 2.3555 0.0096 32 1 1.4001 4.5168 -0.0011 33 1 5.1055 2.6459 -0.0104 34 1 3.8771 -0.6806 0.3532 35 1 7.5114 0.7135 -2.1628 36 1 8.6777 0.8714 -0.8138 37 1 10.1441 0.3119 -2.6352 38 1 8.9444 -0.8039 -3.3703 39 1 11.1239 -1.7449 0.0472 40 1 11.2222 -4.7472 -0.0363 41 1 8.1993 -2.9329 -1.3582 42 1 8.8225 -2.3225 0.1999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332173915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:30 Heat of formation + Delta-G solvation = -96.923140 kcal Electronic energy + Delta-G solvation = -28892.768804 eV Core-core repulsion = 24646.279072 eV Total energy + Delta-G solvation = -4246.489731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46428 -40.26974 -38.80483 -38.29641 -37.32495 -35.45803 -34.22528 -32.24485 -31.55364 -30.48706 -30.20316 -28.05831 -27.90552 -26.11783 -24.58770 -23.40955 -23.05147 -21.78189 -20.03050 -19.58921 -18.81256 -17.92472 -17.49773 -17.20534 -16.80720 -16.35204 -16.01105 -15.85786 -15.26968 -15.22218 -14.72002 -14.66367 -14.48819 -14.25533 -14.21012 -13.72220 -13.11938 -13.00526 -12.96433 -12.84833 -12.38708 -12.03149 -11.97886 -11.75265 -11.56383 -11.18392 -11.10656 -11.04750 -10.81880 -10.62485 -10.48663 -10.20376 -9.84175 -9.45124 -9.39558 -9.21629 -8.70771 -8.38308 -8.36605 -8.09509 -6.33474 -4.41491 0.68462 0.96273 1.68171 2.32891 2.66593 3.18074 3.27159 3.30798 3.34591 3.61257 3.66927 4.23862 4.33429 4.34945 4.43387 4.47257 4.69621 4.70898 4.85847 4.94888 5.04052 5.26830 5.37106 5.45104 5.61837 5.78196 5.80430 5.89558 6.00802 6.24621 6.34268 6.46112 6.67801 6.73854 6.77280 6.79338 6.95601 7.14575 7.27410 7.60282 7.68850 7.80434 7.88630 7.97809 8.27475 8.62515 9.26190 9.35907 10.74645 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.002626 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.314791 B =10659.756900 C =11408.673905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.139 3.861 4 C -0.242 4.242 5 C 0.114 3.886 6 N -0.484 5.484 7 C 0.124 3.876 8 C 0.073 3.927 9 N -0.635 5.635 10 C 0.512 3.488 11 O -0.497 6.497 12 C 0.510 3.490 13 O -0.533 6.533 14 N -0.571 5.571 15 C 0.096 3.904 16 C -0.120 4.120 17 C 0.248 3.752 18 O -0.583 6.583 19 C -0.535 4.535 20 H 0.069 0.931 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.098 3.902 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.185 0.815 34 H 0.427 0.573 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.384 0.616 40 H 0.270 0.730 41 H 0.074 0.926 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.632 9.858 1.782 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.084 3.916 4 C -0.264 4.264 5 C -0.044 4.044 6 N -0.196 5.196 7 C -0.034 4.034 8 C -0.025 4.025 9 N -0.282 5.282 10 C 0.296 3.704 11 O -0.371 6.371 12 C 0.291 3.709 13 O -0.411 6.411 14 N -0.303 5.303 15 C -0.026 4.026 16 C -0.158 4.158 17 C 0.207 3.793 18 O -0.392 6.392 19 C -0.574 4.574 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.535 5.535 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.023 4.023 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.201 0.799 34 H 0.266 0.734 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.234 0.766 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.100 10.984 1.522 22.086 hybrid contribution -0.579 -2.549 0.091 2.616 sum -19.679 8.434 1.613 21.471 Atomic orbital electron populations 1.23154 0.77311 1.04607 1.01657 1.86057 1.22263 1.25711 1.88121 1.19078 0.90405 0.85624 0.96506 1.22071 1.01430 0.92389 1.10479 1.22613 0.90459 0.96997 0.94327 1.67852 1.06814 1.31123 1.13810 1.23260 1.01873 0.84660 0.93625 1.18381 0.87244 0.88961 1.07889 1.42986 1.13064 1.12264 1.59845 1.20690 0.82207 0.89452 0.78058 1.90680 1.73470 1.32781 1.40122 1.19193 0.82418 0.87445 0.81800 1.90759 1.73716 1.32359 1.44314 1.48707 1.10958 1.17638 1.52977 1.22704 0.95944 0.87899 0.96081 1.22821 0.96603 0.98705 0.97713 1.19522 0.84153 0.89926 0.85657 1.86125 1.62821 1.42616 1.47618 1.21548 1.40461 1.01127 0.94226 0.91318 1.25084 0.94612 0.98381 0.95246 1.69642 1.46255 1.28935 1.08629 0.86325 0.78869 0.81159 0.80429 1.19552 1.20704 1.20785 1.23328 0.88799 0.87693 1.02436 0.87646 0.92239 0.92230 0.83935 0.82299 0.79878 0.73407 0.89421 0.91041 0.90164 0.90429 0.76555 0.91965 0.90758 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.84 101.05 0.99 1.14 16 2 O -0.31 -3.05 10.03 -19.14 -0.19 -3.24 16 3 C 0.14 1.51 6.75 -38.66 -0.26 1.25 16 4 C -0.24 -2.07 9.11 -39.33 -0.36 -2.42 16 5 C 0.11 1.07 11.17 -17.56 -0.20 0.88 16 6 N -0.48 -6.11 10.35 -13.15 -0.14 -6.24 16 7 C 0.12 1.68 9.90 -17.36 -0.17 1.51 16 8 C 0.07 0.95 6.47 -83.41 -0.54 0.41 16 9 N -0.63 -8.85 5.29 -10.09 -0.05 -8.91 16 10 C 0.51 8.35 7.67 -11.64 -0.09 8.27 16 11 O -0.50 -8.34 10.97 5.46 0.06 -8.28 16 12 C 0.51 9.82 7.91 -11.64 -0.09 9.73 16 13 O -0.53 -11.26 16.81 5.48 0.09 -11.16 16 14 N -0.57 -11.65 3.33 -171.07 -0.57 -12.21 16 15 C 0.10 1.78 6.05 -2.53 -0.02 1.77 16 16 C -0.12 -2.41 6.23 -24.58 -0.15 -2.56 16 17 C 0.25 5.87 0.85 -89.94 -0.08 5.80 16 18 O -0.58 -14.40 13.07 -35.23 -0.46 -14.86 16 19 C -0.54 -13.69 8.12 -34.44 -0.28 -13.97 16 20 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 21 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 22 N -0.90 -23.24 10.98 55.43 0.61 -22.63 16 23 Si 0.90 20.12 29.54 -169.99 -5.02 15.09 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 C 0.10 2.29 5.37 -3.06 -0.02 2.27 16 28 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.24 7.70 -51.93 -0.40 -0.16 16 30 H 0.06 0.26 7.72 -51.93 -0.40 -0.14 16 31 H 0.14 0.74 6.46 -52.49 -0.34 0.41 16 32 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.18 2.64 5.79 -52.48 -0.30 2.34 16 34 H 0.43 5.63 7.91 -40.82 -0.32 5.31 16 35 H 0.09 1.51 6.16 -51.93 -0.32 1.19 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 39 H 0.38 9.67 7.26 45.56 0.33 10.00 16 40 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 41 H 0.07 1.86 7.81 -51.93 -0.41 1.45 16 42 H 0.07 1.82 7.98 -51.93 -0.41 1.41 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -29.64 353.82 -5.92 -35.55 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -4.23 Total: 15.80 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -1.35 Total: 15.76 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.15 Total: -50.00 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.50 Total: -37.54 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.64 -5.92 -35.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332173915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.369 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds