Wall clock time and date at job start Tue Mar 31 2020 19:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35808 * 117.00183 * 2 1 4 4 C 1.39079 * 120.87043 * 0.24550 * 3 2 1 5 5 C 1.38070 * 119.16920 * 180.27854 * 4 3 2 6 6 N 1.31947 * 120.97513 * 359.71906 * 5 4 3 7 7 C 1.31921 * 121.92497 * 0.02562 * 6 5 4 8 8 C 1.38646 * 120.71457 * 0.02562 * 7 6 5 9 9 N 1.39918 * 120.51932 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00332 * 335.26030 * 9 8 7 11 11 O 1.21391 * 120.00250 * 354.44956 * 10 9 8 12 12 C 1.49344 * 120.00257 * 174.44906 * 10 9 8 13 13 O 1.21367 * 119.99514 * 0.02562 * 12 10 9 14 14 N 1.34771 * 119.99879 * 179.97438 * 12 10 9 15 15 C 1.47423 * 125.65248 * 359.96044 * 14 12 10 16 16 C 1.54911 * 104.83314 * 204.16339 * 15 14 12 17 17 C 1.55152 * 101.58123 * 322.99120 * 16 15 14 18 18 O 1.42903 * 110.71863 * 277.13709 * 17 16 15 19 19 C 1.50699 * 110.87215 * 153.93664 * 17 16 15 20 20 H 1.08001 * 119.99902 * 2.54414 * 19 17 16 21 21 C 1.37884 * 120.00018 * 182.54707 * 19 17 16 22 22 N 1.31510 * 120.00069 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 119.99772 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47315 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47321 * 120.00203 * 23 21 19 26 26 H 1.48508 * 109.46761 * 239.99649 * 23 21 19 27 27 C 1.47024 * 125.64371 * 180.02562 * 14 12 10 28 28 H 1.09004 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47108 * 299.99964 * 1 2 3 30 30 H 1.08998 * 109.46860 * 59.99954 * 1 2 3 31 31 H 1.07997 * 120.41408 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.51125 * 179.74756 * 5 4 3 33 33 H 1.08004 * 119.64043 * 179.97438 * 7 6 5 34 34 H 0.97003 * 119.99790 * 155.25953 * 9 8 7 35 35 H 1.08999 * 110.36479 * 323.00022 * 15 14 12 36 36 H 1.08998 * 110.36699 * 85.32427 * 15 14 12 37 37 H 1.09000 * 111.00288 * 204.91359 * 16 15 14 38 38 H 1.09001 * 111.00137 * 81.06398 * 16 15 14 39 39 H 0.96708 * 113.99704 * 174.97811 * 18 17 16 40 40 H 0.97000 * 120.00078 * 179.97438 * 22 21 19 41 41 H 1.08993 * 109.88613 * 59.48817 * 27 14 12 42 42 H 1.08999 * 109.87993 * 298.31924 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3059 2.3878 0.0051 5 6 1.9690 3.5989 -0.0009 6 7 3.2874 3.6512 -0.0059 7 6 4.0289 2.5601 -0.0058 8 6 3.4410 1.3044 -0.0010 9 7 4.2314 0.1499 -0.0015 10 6 5.4850 0.1915 -0.4946 11 8 5.8936 1.2017 -1.0295 12 6 6.3715 -1.0052 -0.3830 13 8 5.9628 -2.0153 0.1514 14 7 7.6248 -0.9637 -0.8766 15 6 8.2458 0.1922 -1.5488 16 6 9.3577 -0.4169 -2.4389 17 6 9.8792 -1.5695 -1.5407 18 8 10.8250 -1.0797 -0.5880 19 6 10.4860 -2.6680 -2.3752 20 1 10.5478 -2.5597 -3.4479 21 6 10.9623 -3.8112 -1.7690 22 7 10.8875 -3.9428 -0.4627 23 14 11.7151 -5.1724 -2.8033 24 1 11.6814 -4.7820 -4.2356 25 1 13.1221 -5.3930 -2.3829 26 1 10.9396 -6.4246 -2.6136 27 6 8.5989 -2.0642 -0.8352 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2264 2.3555 0.0096 32 1 1.4001 4.5168 -0.0011 33 1 5.1055 2.6459 -0.0104 34 1 3.8771 -0.6806 0.3532 35 1 7.5114 0.7135 -2.1628 36 1 8.6777 0.8714 -0.8138 37 1 10.1441 0.3119 -2.6352 38 1 8.9444 -0.8039 -3.3703 39 1 11.1239 -1.7449 0.0472 40 1 11.2222 -4.7472 -0.0363 41 1 8.1993 -2.9329 -1.3582 42 1 8.8225 -2.3225 0.1999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332173915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:29 Heat of formation + Delta-G solvation = -120.566246 kcal Electronic energy + Delta-G solvation = -28893.794046 eV Core-core repulsion = 24646.279072 eV Total energy + Delta-G solvation = -4247.514973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.52659 -41.46962 -40.13142 -39.21460 -38.96031 -36.74263 -35.86615 -34.21705 -32.33033 -31.94254 -31.38848 -29.76330 -28.49384 -27.77921 -26.03782 -24.46687 -24.14684 -23.09352 -21.56935 -21.15123 -19.68859 -19.17518 -19.01198 -18.63184 -17.89801 -17.56550 -17.43204 -16.97134 -16.87454 -16.29350 -16.06222 -15.91812 -15.80306 -15.19673 -15.14731 -14.84437 -14.80558 -14.74009 -14.51161 -14.08843 -13.66702 -13.47525 -13.39814 -12.89015 -12.73143 -12.62352 -12.54796 -12.39876 -12.35631 -12.24359 -12.10792 -12.04216 -11.22840 -10.81335 -10.67706 -10.57889 -10.31167 -10.12408 -9.82377 -9.30694 -8.27798 -6.42825 -0.30680 0.13365 0.44000 1.01410 1.41306 1.44945 1.55376 1.93897 2.00029 2.29318 2.39732 2.73574 2.98515 3.07376 3.55623 3.67367 3.71643 3.77736 3.96212 4.03233 4.12680 4.30320 4.33832 4.38667 4.48088 4.51574 4.60040 4.72119 4.74401 4.88011 4.92621 4.98903 5.07970 5.09187 5.30396 5.43010 5.48479 5.72727 5.75852 6.02995 6.08090 6.26118 6.42822 6.64318 6.72419 6.96268 7.27651 7.35898 8.79006 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.002626 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.314791 B =10659.756900 C =11408.673905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.143 3.857 4 C -0.229 4.229 5 C 0.118 3.882 6 N -0.510 5.510 7 C 0.111 3.889 8 C 0.043 3.957 9 N -0.621 5.621 10 C 0.521 3.479 11 O -0.503 6.503 12 C 0.509 3.491 13 O -0.556 6.556 14 N -0.579 5.579 15 C 0.105 3.895 16 C -0.114 4.114 17 C 0.234 3.766 18 O -0.587 6.587 19 C -0.555 4.555 20 H 0.068 0.932 21 C 0.027 3.973 22 N -0.915 5.915 23 Si 0.964 3.036 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.282 1.282 27 C 0.115 3.885 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.197 0.803 33 H 0.166 0.834 34 H 0.430 0.570 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.050 0.950 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.261 11.040 1.098 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.087 3.913 4 C -0.250 4.250 5 C -0.039 4.039 6 N -0.222 5.222 7 C -0.046 4.046 8 C -0.054 4.054 9 N -0.267 5.267 10 C 0.304 3.696 11 O -0.378 6.378 12 C 0.291 3.709 13 O -0.436 6.436 14 N -0.310 5.310 15 C -0.016 4.016 16 C -0.152 4.152 17 C 0.194 3.806 18 O -0.395 6.395 19 C -0.593 4.593 20 H 0.086 0.914 21 C -0.174 4.174 22 N -0.554 5.554 23 Si 0.790 3.210 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.208 1.208 27 C -0.007 4.007 28 H 0.137 0.863 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.201 0.799 32 H 0.214 0.786 33 H 0.183 0.817 34 H 0.269 0.731 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.227 0.773 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.772 12.194 0.839 24.968 hybrid contribution 0.031 -2.883 0.358 2.905 sum -21.741 9.311 1.197 23.682 Atomic orbital electron populations 1.23521 0.74863 1.06184 1.03263 1.86053 1.24791 1.25397 1.87758 1.19209 0.89697 0.86928 0.95451 1.22474 1.03258 0.90923 1.08309 1.23300 0.89536 0.98952 0.92114 1.67851 1.08537 1.30797 1.15041 1.23002 1.01471 0.85384 0.94755 1.18488 0.88338 0.88090 1.10454 1.42779 1.12140 1.12949 1.58881 1.19925 0.82757 0.88063 0.78900 1.90679 1.73781 1.32396 1.40931 1.19763 0.82245 0.88209 0.80641 1.90733 1.74173 1.33647 1.45001 1.48700 1.11219 1.17355 1.53770 1.22718 0.95823 0.87119 0.95932 1.22823 0.97202 0.97674 0.97531 1.19716 0.83810 0.91253 0.85856 1.86115 1.63208 1.42475 1.47711 1.21827 1.40959 1.02053 0.94456 0.91395 1.25794 0.95020 1.00326 0.96246 1.69736 1.46610 1.29372 1.09701 0.85404 0.77973 0.78457 0.79187 1.19036 1.20415 1.20815 1.22848 0.89604 0.87948 1.00295 0.86346 0.90384 0.90710 0.79923 0.78623 0.81699 0.73130 0.87588 0.90825 0.88995 0.89595 0.77253 0.91921 0.93172 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 113.37 1.12 1.23 16 2 O -0.33 -5.71 10.03 -91.40 -0.92 -6.63 16 3 C 0.14 2.79 6.75 22.87 0.15 2.94 16 4 C -0.23 -3.03 9.11 22.43 0.20 -2.83 16 5 C 0.12 1.84 11.17 84.64 0.95 2.78 16 6 N -0.51 -12.13 10.35 -195.51 -2.02 -14.15 16 7 C 0.11 2.98 9.90 84.78 0.84 3.82 16 8 C 0.04 1.10 6.47 38.34 0.25 1.35 16 9 N -0.62 -17.34 5.29 -304.18 -1.61 -18.95 16 10 C 0.52 17.15 7.67 87.24 0.67 17.82 16 11 O -0.50 -16.90 10.97 -3.37 -0.04 -16.94 16 12 C 0.51 20.04 7.91 87.24 0.69 20.73 16 13 O -0.56 -24.19 16.81 -3.30 -0.06 -24.25 16 14 N -0.58 -24.12 3.33 -813.50 -2.71 -26.83 16 15 C 0.11 3.89 6.05 86.86 0.53 4.42 16 16 C -0.11 -4.54 6.23 31.98 0.20 -4.34 16 17 C 0.23 11.30 0.85 -10.35 -0.01 11.29 16 18 O -0.59 -29.64 13.07 -148.98 -1.95 -31.58 16 19 C -0.55 -28.75 8.12 25.60 0.21 -28.54 16 20 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 21 C 0.03 1.40 5.28 84.66 0.45 1.85 16 22 N -0.91 -48.62 10.98 21.45 0.24 -48.38 16 23 Si 0.96 41.50 29.54 68.60 2.03 43.53 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.12 5.59 5.37 86.73 0.47 6.05 16 28 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.30 7.70 -2.38 -0.02 0.28 16 30 H 0.07 0.34 7.72 -2.39 -0.02 0.32 16 31 H 0.18 0.89 6.46 -2.91 -0.02 0.87 16 32 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.17 4.91 5.79 -2.91 -0.02 4.89 16 34 H 0.43 11.38 7.91 -92.71 -0.73 10.64 16 35 H 0.11 3.56 6.16 -2.39 -0.01 3.55 16 36 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.09 3.24 8.04 -2.39 -0.02 3.22 16 39 H 0.38 19.73 7.26 -74.05 -0.54 19.20 16 40 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.05 2.62 7.81 -2.39 -0.02 2.61 16 42 H 0.05 2.44 7.98 -2.39 -0.02 2.42 16 Total: -1.00 -65.57 353.82 -0.50 -66.07 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.17 Total: 39.55 kcal Atomic # 6 Polarization: 31.87 SS G_CDS: 6.70 Total: 38.57 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -6.10 Total: -108.31 kcal Atomic # 8 Polarization: -76.45 SS G_CDS: -2.96 Total: -79.40 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.57 -0.50 -66.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332173915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.497 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds