Wall clock time and date at job start Tue Mar 31 2020 18:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34769 * 120.00055 * 2 1 4 4 O 1.21587 * 119.99924 * 0.02562 * 3 2 1 5 5 C 1.47616 * 120.00311 * 179.97438 * 3 2 1 6 6 C 1.39742 * 120.05768 * 359.97438 * 5 3 2 7 7 C 1.37793 * 120.05357 * 180.02562 * 6 5 3 8 8 C 1.38817 * 120.17167 * 0.02562 * 7 6 5 9 9 O 1.35761 * 119.94080 * 180.27093 * 8 7 6 10 10 C 1.42894 * 117.00426 * 359.72460 * 9 8 7 11 11 C 1.39612 * 120.11462 * 359.97438 * 8 7 6 12 12 N 1.39909 * 120.02604 * 180.02562 * 11 8 7 13 13 C 1.34779 * 119.99685 * 145.27759 * 12 11 8 14 14 O 1.21388 * 120.00454 * 4.48526 * 13 12 11 15 15 C 1.49343 * 119.99620 * 184.48543 * 13 12 11 16 16 O 1.21359 * 120.00076 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99620 * 179.97438 * 15 13 12 18 18 C 1.46498 * 119.99673 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.47237 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99484 * 0.02562 * 19 18 17 21 21 C 1.37866 * 120.00100 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00271 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99992 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47405 * 90.00099 * 23 21 19 25 25 H 1.48504 * 109.47249 * 210.00205 * 23 21 19 26 26 H 1.48506 * 109.47298 * 330.00315 * 23 21 19 27 27 C 1.38375 * 119.94925 * 359.97438 * 11 8 7 28 28 H 1.08993 * 109.47310 * 60.00436 * 1 2 3 29 29 H 1.09005 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99863 * 1 2 3 31 31 H 0.97003 * 120.00243 * 179.97438 * 2 1 3 32 32 H 1.07998 * 119.97530 * 0.02562 * 6 5 3 33 33 H 1.07993 * 119.91407 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.46754 * 59.99875 * 10 9 8 35 35 H 1.09000 * 109.47334 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47309 * 300.00266 * 10 9 8 37 37 H 0.97000 * 120.00060 * 325.28699 * 12 11 8 38 38 H 0.96994 * 120.00361 * 0.02562 * 17 15 13 39 39 H 1.08997 * 109.47373 * 300.00273 * 18 17 15 40 40 H 1.08998 * 109.47074 * 60.00029 * 18 17 15 41 41 H 0.97000 * 120.00226 * 179.97438 * 22 21 19 42 42 H 1.07992 * 120.09116 * 179.97438 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5309 2.2201 0.0005 5 6 3.6150 1.1672 0.0006 6 6 4.3150 -0.0423 0.0017 7 6 5.6929 -0.0421 0.0027 8 6 6.3904 1.1581 0.0033 9 8 7.7480 1.1528 -0.0013 10 6 8.3919 -0.1229 -0.0003 11 6 5.6983 2.3705 0.0022 12 7 6.4032 3.5791 0.0022 13 6 5.9145 4.6442 -0.6635 14 8 4.8248 4.5804 -1.1947 15 6 6.7136 5.9030 -0.7477 16 8 7.8032 5.9667 -0.2171 17 7 6.2251 6.9680 -1.4139 18 6 7.0093 8.2026 -1.4970 19 6 6.2448 9.2309 -2.2904 20 1 5.2719 8.9889 -2.6921 21 6 6.7869 10.4806 -2.5024 22 7 7.9714 10.7754 -2.0127 23 14 5.8390 11.7553 -3.4852 24 1 4.9864 12.5538 -2.5683 25 1 6.7942 12.6543 -4.1815 26 1 4.9826 11.0714 -4.4874 27 6 4.3145 2.3761 0.0000 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 3.7755 -0.9779 0.0017 33 1 6.2316 -0.9781 0.0031 34 1 8.0938 -0.6809 -0.8880 35 1 9.4730 0.0157 -0.0047 36 1 8.0998 -0.6767 0.8920 37 1 7.2436 3.6503 0.4812 38 1 5.3544 6.9170 -1.8383 39 1 7.1956 8.5830 -0.4927 40 1 7.9595 7.9970 -1.9897 41 1 8.3529 11.6546 -2.1623 42 1 3.7768 3.3126 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339406999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:53 Heat of formation + Delta-G solvation = -106.784752 kcal Electronic energy + Delta-G solvation = -27859.581388 eV Core-core repulsion = 23612.664025 eV Total energy + Delta-G solvation = -4246.917363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24476 -40.04698 -39.62518 -38.17800 -37.17083 -35.26714 -34.86476 -34.16155 -32.34188 -30.85180 -30.33787 -28.14747 -27.71528 -26.72242 -24.90887 -23.40094 -23.02101 -21.75640 -20.70298 -19.87037 -19.12798 -18.29958 -18.08701 -16.86752 -16.72907 -16.35128 -16.10166 -15.70470 -15.58315 -15.41176 -15.30623 -14.96084 -14.48055 -14.29993 -14.21637 -14.05161 -13.53292 -13.33743 -13.17014 -13.05652 -12.79616 -12.60643 -12.35702 -12.02878 -11.88110 -11.72023 -11.43527 -11.13320 -10.96438 -10.88970 -10.61637 -10.29493 -10.19162 -9.45364 -9.45034 -9.11961 -8.94611 -8.79912 -8.18739 -8.06680 -6.19117 -4.26205 0.55303 0.91596 1.81843 2.54491 2.65210 2.80818 2.94658 3.26618 3.32643 3.36371 3.52467 3.72520 4.04357 4.32593 4.35456 4.46049 4.50371 4.69564 4.77573 4.87937 4.89442 5.06035 5.12463 5.17675 5.18385 5.20416 5.46169 5.47888 5.64811 5.74342 5.95771 6.03786 6.14094 6.46199 6.90183 7.03891 7.12184 7.17148 7.24036 7.39492 7.58785 7.87810 7.90963 7.98954 8.41425 8.59824 8.86101 9.39995 10.90969 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.002614 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.591072 B =10708.245971 C =12768.023173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.736 5.736 3 C 0.562 3.438 4 O -0.527 6.527 5 C -0.159 4.159 6 C -0.060 4.060 7 C -0.200 4.200 8 C 0.134 3.866 9 O -0.308 6.308 10 C 0.027 3.973 11 C 0.113 3.887 12 N -0.642 5.642 13 C 0.507 3.493 14 O -0.502 6.502 15 C 0.494 3.506 16 O -0.535 6.535 17 N -0.670 5.670 18 C 0.246 3.754 19 C -0.546 4.546 20 H 0.067 0.933 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.907 3.093 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.271 1.271 27 C -0.025 4.025 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.399 0.601 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.427 0.573 38 H 0.405 0.595 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.267 0.733 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -29.866 5.748 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.349 3.651 4 O -0.403 6.403 5 C -0.163 4.163 6 C -0.080 4.080 7 C -0.219 4.219 8 C 0.086 3.914 9 O -0.221 6.221 10 C -0.068 4.068 11 C 0.018 3.982 12 N -0.290 5.290 13 C 0.290 3.710 14 O -0.375 6.375 15 C 0.272 3.728 16 O -0.413 6.413 17 N -0.319 5.319 18 C 0.127 3.873 19 C -0.584 4.584 20 H 0.085 0.915 21 C -0.139 4.139 22 N -0.523 5.523 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.046 4.046 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.266 0.734 38 H 0.240 0.760 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.386 -28.658 5.707 29.910 hybrid contribution -0.136 -0.103 -0.500 0.528 sum -6.522 -28.761 5.206 29.947 Atomic orbital electron populations 1.21545 0.79206 1.02160 1.02660 1.45669 1.07838 1.08478 1.76875 1.18143 0.87087 0.83730 0.76112 1.90835 1.69798 1.31016 1.48691 1.19618 0.92817 0.93667 1.10169 1.20987 0.93541 0.96865 0.96604 1.20940 0.94859 0.96590 1.09558 1.19064 0.82941 0.92766 0.96644 1.86079 1.15743 1.32321 1.87938 1.23149 0.98453 0.83732 1.01487 1.16945 0.90576 0.83356 1.07289 1.43008 1.26399 1.08390 1.51191 1.20965 0.86602 0.85256 0.78162 1.90764 1.20002 1.82607 1.44134 1.19601 0.86605 0.84410 0.82195 1.90736 1.20721 1.83034 1.46848 1.46420 1.22565 1.13150 1.49785 1.19352 0.91548 0.78257 0.98189 1.21211 1.04494 0.97469 1.35206 0.91508 1.24934 0.95015 0.98262 0.95680 1.69968 1.15953 1.22066 1.44317 0.86361 0.79472 0.80843 0.79972 1.20367 1.20985 1.19599 1.21347 0.91106 0.99618 0.92541 0.92002 0.90652 0.92062 0.76597 0.85294 0.84249 0.92315 0.87757 0.92322 0.73425 0.76005 0.94665 0.94691 0.92355 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.74 -5.75 5.66 -68.13 -0.39 -6.13 16 3 C 0.56 6.93 7.76 -12.44 -0.10 6.84 16 4 O -0.53 -8.89 16.34 5.29 0.09 -8.81 16 5 C -0.16 -1.84 5.87 -104.97 -0.62 -2.45 16 6 C -0.06 -0.47 9.53 -39.18 -0.37 -0.84 16 7 C -0.20 -1.57 9.01 -39.53 -0.36 -1.93 16 8 C 0.13 1.45 6.71 -38.86 -0.26 1.19 16 9 O -0.31 -3.12 10.03 -18.99 -0.19 -3.31 16 10 C 0.03 0.15 9.81 101.05 0.99 1.14 16 11 C 0.11 1.54 6.32 -83.61 -0.53 1.01 16 12 N -0.64 -9.64 5.17 -10.22 -0.05 -9.69 16 13 C 0.51 9.10 7.73 -11.63 -0.09 9.01 16 14 O -0.50 -9.68 13.89 5.46 0.08 -9.60 16 15 C 0.49 10.25 7.89 -11.63 -0.09 10.16 16 16 O -0.53 -12.13 16.48 5.49 0.09 -12.04 16 17 N -0.67 -14.91 5.54 -61.95 -0.34 -15.26 16 18 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16 19 C -0.55 -14.96 9.28 -34.44 -0.32 -15.28 16 20 H 0.07 1.75 7.60 -52.49 -0.40 1.35 16 21 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 23 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.03 -0.36 8.23 -39.00 -0.32 -0.68 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.40 1.72 6.85 -40.82 -0.28 1.45 16 32 H 0.13 0.50 6.39 -52.49 -0.34 0.16 16 33 H 0.14 0.65 6.27 -52.49 -0.33 0.32 16 34 H 0.06 0.26 7.64 -51.93 -0.40 -0.14 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 37 H 0.43 5.95 8.04 -40.82 -0.33 5.62 16 38 H 0.41 8.43 7.79 -40.82 -0.32 8.11 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 42 H 0.16 2.79 5.77 -52.49 -0.30 2.49 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -35.72 368.15 -5.76 -41.48 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.76 Total: 9.28 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: -1.55 Total: 17.57 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.05 Total: -56.22 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: 0.06 Total: -33.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.72 -5.76 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339406999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.307 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds