Wall clock time and date at job start Tue Mar 31 2020 18:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34769 * 120.00055 * 2 1 4 4 O 1.21587 * 119.99924 * 0.02562 * 3 2 1 5 5 C 1.47616 * 120.00311 * 179.97438 * 3 2 1 6 6 C 1.39742 * 120.05768 * 359.97438 * 5 3 2 7 7 C 1.37793 * 120.05357 * 180.02562 * 6 5 3 8 8 C 1.38817 * 120.17167 * 0.02562 * 7 6 5 9 9 O 1.35761 * 119.94080 * 180.27093 * 8 7 6 10 10 C 1.42894 * 117.00426 * 359.72460 * 9 8 7 11 11 C 1.39612 * 120.11462 * 359.97438 * 8 7 6 12 12 N 1.39909 * 120.02604 * 180.02562 * 11 8 7 13 13 C 1.34779 * 119.99685 * 145.27759 * 12 11 8 14 14 O 1.21388 * 120.00454 * 4.48526 * 13 12 11 15 15 C 1.49343 * 119.99620 * 184.48543 * 13 12 11 16 16 O 1.21359 * 120.00076 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99620 * 179.97438 * 15 13 12 18 18 C 1.46498 * 119.99673 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.47237 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99484 * 0.02562 * 19 18 17 21 21 C 1.37866 * 120.00100 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00271 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99992 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47405 * 90.00099 * 23 21 19 25 25 H 1.48504 * 109.47249 * 210.00205 * 23 21 19 26 26 H 1.48506 * 109.47298 * 330.00315 * 23 21 19 27 27 C 1.38375 * 119.94925 * 359.97438 * 11 8 7 28 28 H 1.08993 * 109.47310 * 60.00436 * 1 2 3 29 29 H 1.09005 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99863 * 1 2 3 31 31 H 0.97003 * 120.00243 * 179.97438 * 2 1 3 32 32 H 1.07998 * 119.97530 * 0.02562 * 6 5 3 33 33 H 1.07993 * 119.91407 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.46754 * 59.99875 * 10 9 8 35 35 H 1.09000 * 109.47334 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47309 * 300.00266 * 10 9 8 37 37 H 0.97000 * 120.00060 * 325.28699 * 12 11 8 38 38 H 0.96994 * 120.00361 * 0.02562 * 17 15 13 39 39 H 1.08997 * 109.47373 * 300.00273 * 18 17 15 40 40 H 1.08998 * 109.47074 * 60.00029 * 18 17 15 41 41 H 0.97000 * 120.00226 * 179.97438 * 22 21 19 42 42 H 1.07992 * 120.09116 * 179.97438 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5309 2.2201 0.0005 5 6 3.6150 1.1672 0.0006 6 6 4.3150 -0.0423 0.0017 7 6 5.6929 -0.0421 0.0027 8 6 6.3904 1.1581 0.0033 9 8 7.7480 1.1528 -0.0013 10 6 8.3919 -0.1229 -0.0003 11 6 5.6983 2.3705 0.0022 12 7 6.4032 3.5791 0.0022 13 6 5.9145 4.6442 -0.6635 14 8 4.8248 4.5804 -1.1947 15 6 6.7136 5.9030 -0.7477 16 8 7.8032 5.9667 -0.2171 17 7 6.2251 6.9680 -1.4139 18 6 7.0093 8.2026 -1.4970 19 6 6.2448 9.2309 -2.2904 20 1 5.2719 8.9889 -2.6921 21 6 6.7869 10.4806 -2.5024 22 7 7.9714 10.7754 -2.0127 23 14 5.8390 11.7553 -3.4852 24 1 4.9864 12.5538 -2.5683 25 1 6.7942 12.6543 -4.1815 26 1 4.9826 11.0714 -4.4874 27 6 4.3145 2.3761 0.0000 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 3.7755 -0.9779 0.0017 33 1 6.2316 -0.9781 0.0031 34 1 8.0938 -0.6809 -0.8880 35 1 9.4730 0.0157 -0.0047 36 1 8.0998 -0.6767 0.8920 37 1 7.2436 3.6503 0.4812 38 1 5.3544 6.9170 -1.8383 39 1 7.1956 8.5830 -0.4927 40 1 7.9595 7.9970 -1.9897 41 1 8.3529 11.6546 -2.1623 42 1 3.7768 3.3126 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339406999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:52 Heat of formation + Delta-G solvation = -137.330142 kcal Electronic energy + Delta-G solvation = -27860.905935 eV Core-core repulsion = 23612.664025 eV Total energy + Delta-G solvation = -4248.241910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35350 -41.28360 -40.51225 -39.70914 -38.11153 -36.71225 -35.95464 -35.61655 -34.38957 -31.65069 -31.31738 -29.72828 -28.69634 -27.40852 -26.45223 -24.60236 -24.17953 -23.14708 -21.63520 -21.43239 -20.35405 -19.52810 -18.84416 -18.34123 -17.92233 -17.64472 -17.23077 -16.96889 -16.78649 -16.70429 -16.40567 -16.24060 -15.92232 -15.50422 -15.33629 -15.06548 -14.81254 -14.56971 -14.12209 -14.09855 -13.94113 -13.83922 -13.57619 -13.30920 -13.05725 -12.99511 -12.74632 -12.66678 -12.26488 -12.16556 -12.05514 -11.69771 -11.55034 -11.17051 -10.86492 -10.73813 -10.22229 -10.09642 -9.81955 -9.09642 -8.33058 -6.49345 -0.31222 -0.06747 0.43219 1.19940 1.43038 1.44385 1.56355 1.70937 2.05223 2.12670 2.19947 2.35123 2.65574 2.72625 3.02010 3.37895 3.68366 3.73031 3.82043 4.08096 4.19240 4.38030 4.47274 4.47569 4.59833 4.63702 4.78833 4.81641 4.94614 4.97819 5.02545 5.12797 5.14670 5.17119 5.22073 5.36610 5.47967 5.52644 5.74932 5.85112 6.22259 6.42695 6.51797 6.54911 6.69435 6.94459 7.20261 7.23335 8.78682 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.002614 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.591072 B =10708.245971 C =12768.023173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.554 3.446 4 O -0.588 6.588 5 C -0.175 4.175 6 C -0.031 4.031 7 C -0.186 4.186 8 C 0.143 3.857 9 O -0.330 6.330 10 C 0.013 3.987 11 C 0.076 3.924 12 N -0.626 5.626 13 C 0.515 3.485 14 O -0.519 6.519 15 C 0.496 3.504 16 O -0.555 6.555 17 N -0.673 5.673 18 C 0.263 3.737 19 C -0.563 4.563 20 H 0.078 0.922 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.983 3.017 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.261 1.261 27 C -0.047 4.047 28 H 0.046 0.954 29 H 0.120 0.880 30 H 0.049 0.951 31 H 0.420 0.580 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.430 0.570 38 H 0.412 0.588 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.271 0.729 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -33.964 5.367 35.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.343 3.657 4 O -0.469 6.469 5 C -0.179 4.179 6 C -0.050 4.050 7 C -0.205 4.205 8 C 0.094 3.906 9 O -0.243 6.243 10 C -0.080 4.080 11 C -0.018 4.018 12 N -0.273 5.273 13 C 0.297 3.703 14 O -0.395 6.395 15 C 0.276 3.724 16 O -0.435 6.435 17 N -0.322 5.322 18 C 0.142 3.858 19 C -0.601 4.601 20 H 0.096 0.904 21 C -0.190 4.190 22 N -0.562 5.562 23 Si 0.806 3.194 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.068 4.068 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.067 0.933 31 H 0.259 0.741 32 H 0.198 0.802 33 H 0.204 0.796 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.270 0.730 38 H 0.249 0.751 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.080 0.920 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.003 -32.885 5.347 34.045 hybrid contribution 0.136 0.923 -0.299 0.979 sum -6.867 -31.962 5.048 33.079 Atomic orbital electron populations 1.21724 0.78273 1.04676 1.01401 1.45531 1.08474 1.07967 1.74591 1.18425 0.87582 0.84091 0.75593 1.90804 1.70894 1.33386 1.51848 1.19661 0.92554 0.94216 1.11476 1.21496 0.93736 0.97042 0.92690 1.21455 0.94874 0.96998 1.07162 1.19164 0.83647 0.92479 0.95324 1.86068 1.15331 1.35387 1.87528 1.23536 0.98792 0.82241 1.03441 1.17103 0.90536 0.83489 1.10686 1.42803 1.26255 1.08421 1.49849 1.20198 0.86050 0.84958 0.79076 1.90772 1.20421 1.82790 1.45491 1.20089 0.86418 0.85047 0.80835 1.90709 1.21779 1.83650 1.47335 1.46176 1.22646 1.12650 1.50776 1.18857 0.91031 0.79815 0.96116 1.21555 1.05054 0.98040 1.35464 0.90416 1.25960 0.95906 1.00511 0.96574 1.70098 1.17682 1.22912 1.45531 0.85179 0.78044 0.77730 0.78436 1.19573 1.20369 1.18488 1.21095 0.91599 0.99488 0.94614 0.93498 0.86126 0.93252 0.74130 0.80184 0.79645 0.90540 0.86827 0.89960 0.73026 0.75130 0.97585 0.97510 0.91970 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.70 127.77 1.37 2.30 16 2 N -0.71 -9.36 5.66 -487.72 -2.76 -12.12 16 3 C 0.55 13.54 7.76 86.72 0.67 14.22 16 4 O -0.59 -21.09 16.34 -3.99 -0.07 -21.15 16 5 C -0.18 -3.87 5.87 -20.09 -0.12 -3.99 16 6 C -0.03 -0.34 9.53 22.53 0.21 -0.13 16 7 C -0.19 -2.03 9.01 22.30 0.20 -1.82 16 8 C 0.14 2.77 6.71 22.74 0.15 2.92 16 9 O -0.33 -5.92 10.03 -90.87 -0.91 -6.83 16 10 C 0.01 0.09 9.81 113.37 1.11 1.21 16 11 C 0.08 2.08 6.32 38.22 0.24 2.32 16 12 N -0.63 -19.69 5.17 -304.59 -1.57 -21.26 16 13 C 0.52 19.64 7.73 87.24 0.67 20.32 16 14 O -0.52 -21.43 13.89 -3.36 -0.05 -21.48 16 15 C 0.50 21.83 7.89 87.24 0.69 22.52 16 16 O -0.55 -26.54 16.48 -3.27 -0.05 -26.59 16 17 N -0.67 -31.66 5.54 -468.25 -2.59 -34.26 16 18 C 0.26 14.68 5.43 85.63 0.46 15.15 16 19 C -0.56 -31.75 9.28 25.60 0.24 -31.51 16 20 H 0.08 4.12 7.60 -2.91 -0.02 4.09 16 21 C 0.01 0.62 5.46 84.65 0.46 1.08 16 22 N -0.92 -55.40 13.29 21.44 0.28 -55.12 16 23 Si 0.98 43.56 29.54 68.60 2.03 45.59 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 C -0.05 -1.40 8.23 22.65 0.19 -1.21 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.42 1.66 6.85 -92.71 -0.63 1.02 16 32 H 0.18 0.12 6.39 -2.91 -0.02 0.10 16 33 H 0.19 0.37 6.27 -2.91 -0.02 0.35 16 34 H 0.08 0.29 7.64 -2.38 -0.02 0.27 16 35 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.21 7.66 -2.39 -0.02 0.19 16 37 H 0.43 12.54 8.04 -92.71 -0.75 11.79 16 38 H 0.41 18.08 7.79 -92.71 -0.72 17.36 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.12 4.66 5.77 -2.91 -0.02 4.65 16 Total: -1.00 -85.15 368.15 -0.12 -85.27 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.98 Total: 24.59 kcal Atomic # 6 Polarization: 36.80 SS G_CDS: 6.56 Total: 43.36 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -6.65 Total: -122.75 kcal Atomic # 8 Polarization: -74.98 SS G_CDS: -1.08 Total: -76.06 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -85.15 -0.12 -85.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339406999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.055 kcal (2) G-P(sol) polarization free energy of solvation -85.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds