Wall clock time and date at job start Tue Mar 31 2020 19:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35979 * 116.99846 * 2 1 4 4 C 1.38736 * 119.98273 * 0.02562 * 3 2 1 5 5 C 1.38081 * 120.00690 * 179.74788 * 4 3 2 6 6 C 1.38853 * 119.98588 * 0.52656 * 5 4 3 7 7 N 1.40153 * 120.00880 * 179.72208 * 6 5 4 8 8 C 1.34775 * 120.00428 * 30.56400 * 7 6 5 9 9 O 1.21596 * 119.99643 * 5.28702 * 8 7 6 10 10 N 1.34778 * 120.00372 * 185.29949 * 8 7 6 11 11 C 1.46499 * 120.00065 * 185.23248 * 10 8 7 12 12 C 1.52998 * 109.47067 * 184.44574 * 11 10 8 13 13 C 1.50704 * 115.55046 * 305.15663 * 12 11 10 14 14 H 1.07993 * 120.00365 * 119.11081 * 13 12 11 15 15 C 1.37877 * 119.99761 * 298.83449 * 13 12 11 16 16 N 1.31516 * 120.00060 * 171.37982 * 15 13 12 17 17 Si 1.86804 * 120.00132 * 351.37817 * 15 13 12 18 18 H 1.48503 * 109.47455 * 93.49817 * 17 15 13 19 19 H 1.48503 * 109.47143 * 213.49810 * 17 15 13 20 20 H 1.48498 * 109.46733 * 333.49707 * 17 15 13 21 21 C 1.52994 * 117.51788 * 90.85505 * 12 11 10 22 22 C 1.52994 * 117.49984 * 159.48633 * 12 11 10 23 23 C 1.38805 * 119.97269 * 359.45097 * 6 5 4 24 24 N 1.48027 * 120.00504 * 180.25524 * 23 6 5 25 25 O 1.21808 * 119.99766 * 184.46299 * 24 23 6 26 26 O 1.21801 * 120.00135 * 4.45705 * 24 23 6 27 27 C 1.38114 * 119.98641 * 0.27454 * 23 6 5 28 28 H 1.09000 * 109.47098 * 60.00527 * 1 2 3 29 29 H 1.09006 * 109.46856 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47075 * 299.99874 * 1 2 3 31 31 H 1.07997 * 119.99712 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00102 * 180.27525 * 5 4 3 33 33 H 0.97003 * 119.99975 * 210.55084 * 7 6 5 34 34 H 0.96997 * 119.99650 * 5.22715 * 10 8 7 35 35 H 1.09006 * 109.46991 * 64.44637 * 11 10 8 36 36 H 1.08992 * 109.47166 * 304.44774 * 11 10 8 37 37 H 0.97000 * 120.00418 * 180.02562 * 16 15 13 38 38 H 1.09003 * 117.49901 * 214.97235 * 21 12 11 39 39 H 1.09000 * 117.49921 * 359.97438 * 21 12 11 40 40 H 1.09005 * 117.49809 * 359.97438 * 22 12 11 41 41 H 1.09001 * 117.50017 * 144.97262 * 22 12 11 42 42 H 1.08005 * 119.99517 * 179.97438 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2903 2.3749 0.0005 5 6 1.9166 3.6055 0.0058 6 6 3.3032 3.6785 -0.0005 7 7 3.9394 4.9273 -0.0011 8 6 3.3526 5.9829 0.5972 9 8 2.3190 5.8317 1.2196 10 7 3.9113 7.2060 0.5054 11 6 3.3383 8.3307 1.2490 12 6 4.0857 9.6155 0.8863 13 6 5.5803 9.5732 1.0747 14 1 6.2355 9.7194 0.2288 15 6 6.1112 9.3534 2.3280 16 7 7.4026 9.1475 2.4683 17 14 4.9964 9.3482 3.8269 18 1 4.5661 7.9572 4.1190 19 1 5.7342 9.8935 4.9945 20 1 3.8026 10.1896 3.5587 21 6 3.5439 10.4429 -0.2809 22 6 3.3772 10.9446 1.1548 23 6 4.0589 2.5142 -0.0006 24 7 5.5372 2.5912 -0.0016 25 8 6.2000 1.5725 -0.0837 26 8 6.0908 3.6731 0.0796 27 6 3.4313 1.2839 -0.0001 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2118 2.3180 0.0005 32 1 1.3280 4.5110 0.0107 33 1 4.8022 5.0319 -0.4319 34 1 4.6928 7.3415 -0.0529 35 1 3.4330 8.1448 2.3189 36 1 2.2848 8.4379 0.9907 37 1 7.7761 8.9925 3.3500 38 1 4.2685 10.9568 -0.9127 39 1 2.6550 10.0719 -0.7911 40 1 2.3784 10.9038 1.5894 41 1 3.9920 11.7884 1.4681 42 1 4.0192 0.3778 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345085403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:25 Heat of formation + Delta-G solvation = 0.955442 kcal Electronic energy + Delta-G solvation = -28921.730838 eV Core-core repulsion = 24679.485440 eV Total energy + Delta-G solvation = -4242.245398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.34518 -40.80950 -39.95542 -38.02121 -37.07573 -36.63855 -34.44507 -33.65693 -32.23843 -32.16665 -30.02999 -27.78972 -26.72341 -26.31201 -25.18012 -23.48943 -22.38125 -21.67444 -20.73575 -19.60980 -19.41683 -18.78801 -18.23648 -17.82968 -17.51287 -17.33511 -16.45709 -16.40898 -16.19770 -15.48662 -14.96021 -14.83031 -14.45742 -14.38005 -13.99784 -13.55132 -13.36015 -13.24120 -12.99127 -12.97438 -12.50275 -12.25715 -11.91886 -11.70253 -11.55953 -11.21177 -11.15214 -11.10301 -10.77614 -10.63213 -10.33946 -10.29304 -10.08792 -9.80584 -9.57218 -9.25454 -8.94347 -8.53527 -8.50996 -8.09162 -6.21884 -4.24606 -0.29729 0.78742 1.20036 1.27295 2.54482 2.81460 2.92372 3.25364 3.36046 3.39727 3.42478 4.13528 4.21484 4.29721 4.34802 4.46281 4.61531 4.70463 4.74590 4.85375 5.01059 5.08735 5.15978 5.30825 5.54707 5.59815 5.65553 5.81703 5.87705 6.05615 6.12007 6.26224 6.35611 6.38452 6.42250 6.62806 6.78646 6.80008 6.90889 7.02739 7.12334 7.60671 7.61909 8.19612 8.36788 8.67913 8.80425 9.41449 10.88638 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003299 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.541689 B = 8485.918702 C = 9425.783473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.102 3.898 4 C -0.130 4.130 5 C -0.092 4.092 6 C 0.228 3.772 7 N -0.678 5.678 8 C 0.700 3.300 9 O -0.589 6.589 10 N -0.699 5.699 11 C 0.170 3.830 12 C -0.017 4.017 13 C -0.497 4.497 14 H 0.080 0.920 15 C 0.087 3.913 16 N -0.884 5.884 17 Si 0.865 3.135 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.250 1.250 21 C -0.180 4.180 22 C -0.186 4.186 23 C -0.051 4.051 24 N 0.039 4.961 25 O -0.153 6.153 26 O -0.165 6.165 27 C -0.073 4.073 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.423 0.577 34 H 0.412 0.588 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 -15.236 -7.226 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.055 3.945 4 C -0.150 4.150 5 C -0.113 4.113 6 C 0.126 3.874 7 N -0.331 5.331 8 C 0.401 3.599 9 O -0.468 6.468 10 N -0.352 5.352 11 C 0.046 3.954 12 C -0.019 4.019 13 C -0.533 4.533 14 H 0.098 0.902 15 C -0.117 4.117 16 N -0.520 5.520 17 Si 0.692 3.308 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.174 1.174 21 C -0.217 4.217 22 C -0.224 4.224 23 C -0.139 4.139 24 N 0.555 4.445 25 O -0.370 6.370 26 O -0.374 6.374 27 C -0.093 4.093 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.166 0.834 32 H 0.186 0.814 33 H 0.267 0.733 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.466 -15.406 -6.514 22.781 hybrid contribution 0.515 0.247 0.604 0.831 sum -14.952 -15.159 -5.909 22.097 Atomic orbital electron populations 1.23159 0.77657 1.04515 1.01706 1.86101 1.21794 1.25481 1.89008 1.18440 0.90892 0.85041 1.00136 1.21604 1.01296 0.91297 1.00761 1.21254 0.91496 0.99587 0.98945 1.17228 0.91766 0.83056 0.95367 1.43354 1.25277 1.06165 1.58317 1.15958 0.83584 0.80747 0.79645 1.90865 1.24477 1.84408 1.47085 1.45079 1.33865 1.05960 1.50263 1.20999 0.95037 0.84650 0.94736 1.19581 0.95641 0.87209 0.99441 1.20216 0.86600 1.50871 0.95648 0.90223 1.24904 0.94694 0.93327 0.98822 1.69891 1.11798 1.46244 1.24020 0.87065 0.82039 0.78916 0.82751 1.20486 1.21780 1.17400 1.22809 1.01681 1.06019 0.91184 1.23037 1.00329 1.00550 0.98530 1.20455 0.79392 0.94775 1.19288 1.43369 1.02940 1.00589 0.97588 1.94527 1.64211 1.25431 1.52875 1.94470 1.72867 1.16099 1.53995 1.19750 0.92459 0.96636 1.00490 0.92283 0.87741 0.92234 0.83385 0.81402 0.73309 0.75114 0.92690 0.92749 0.92313 0.89582 0.90880 0.91128 0.89207 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.70 10.50 -19.67 -0.21 -2.90 16 3 C 0.10 1.02 6.69 -39.23 -0.26 0.75 16 4 C -0.13 -1.22 9.03 -39.45 -0.36 -1.58 16 5 C -0.09 -1.12 8.67 -39.41 -0.34 -1.47 16 6 C 0.23 3.24 6.32 -83.61 -0.53 2.71 16 7 N -0.68 -10.62 4.71 -14.19 -0.07 -10.69 16 8 C 0.70 12.78 8.32 -86.92 -0.72 12.06 16 9 O -0.59 -11.78 13.83 5.28 0.07 -11.70 16 10 N -0.70 -13.25 5.42 -65.23 -0.35 -13.60 16 11 C 0.17 3.47 5.15 -4.04 -0.02 3.45 16 12 C -0.02 -0.37 1.00 -155.67 -0.16 -0.53 16 13 C -0.50 -12.63 8.66 -34.44 -0.30 -12.93 16 14 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 15 C 0.09 2.36 5.45 -17.82 -0.10 2.27 16 16 N -0.88 -25.68 13.96 55.43 0.77 -24.90 16 17 Si 0.86 20.99 24.88 -169.99 -4.23 16.76 16 18 H -0.28 -6.97 6.99 56.52 0.40 -6.57 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.25 -5.67 5.92 56.52 0.33 -5.33 16 21 C -0.18 -3.30 9.92 -26.73 -0.27 -3.57 16 22 C -0.19 -3.64 8.36 -26.73 -0.22 -3.86 16 23 C -0.05 -0.70 6.86 -79.78 -0.55 -1.25 16 24 N 0.04 0.61 4.45 34.05 0.15 0.76 16 25 O -0.15 -2.38 18.46 -29.46 -0.54 -2.92 16 26 O -0.17 -2.84 15.93 -29.46 -0.47 -3.31 16 27 C -0.07 -0.83 9.49 -39.46 -0.37 -1.21 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 31 H 0.15 0.92 6.29 -52.49 -0.33 0.59 16 32 H 0.17 2.19 6.20 -52.49 -0.33 1.86 16 33 H 0.42 6.33 6.26 -40.82 -0.26 6.07 16 34 H 0.41 7.56 7.99 -40.82 -0.33 7.24 16 35 H 0.06 1.25 4.80 -51.93 -0.25 1.00 16 36 H 0.05 1.03 8.06 -51.93 -0.42 0.62 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.16 1.64 7.62 -52.48 -0.40 1.24 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -31.14 355.51 -7.56 -38.70 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -4.85 Total: 12.49 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -3.20 Total: -4.05 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.50 Total: -48.43 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.15 Total: -20.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.23 Total: 16.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.14 -7.56 -38.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345085403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.660 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds