Wall clock time and date at job start Tue Mar 31 2020 19:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35979 * 116.99846 * 2 1 4 4 C 1.38736 * 119.98273 * 0.02562 * 3 2 1 5 5 C 1.38081 * 120.00690 * 179.74788 * 4 3 2 6 6 C 1.38853 * 119.98588 * 0.52656 * 5 4 3 7 7 N 1.40153 * 120.00880 * 179.72208 * 6 5 4 8 8 C 1.34775 * 120.00428 * 30.56400 * 7 6 5 9 9 O 1.21596 * 119.99643 * 5.28702 * 8 7 6 10 10 N 1.34778 * 120.00372 * 185.29949 * 8 7 6 11 11 C 1.46499 * 120.00065 * 185.23248 * 10 8 7 12 12 C 1.52998 * 109.47067 * 184.44574 * 11 10 8 13 13 C 1.50704 * 115.55046 * 305.15663 * 12 11 10 14 14 H 1.07993 * 120.00365 * 119.11081 * 13 12 11 15 15 C 1.37877 * 119.99761 * 298.83449 * 13 12 11 16 16 N 1.31516 * 120.00060 * 171.37982 * 15 13 12 17 17 Si 1.86804 * 120.00132 * 351.37817 * 15 13 12 18 18 H 1.48503 * 109.47455 * 93.49817 * 17 15 13 19 19 H 1.48503 * 109.47143 * 213.49810 * 17 15 13 20 20 H 1.48498 * 109.46733 * 333.49707 * 17 15 13 21 21 C 1.52994 * 117.51788 * 90.85505 * 12 11 10 22 22 C 1.52994 * 117.49984 * 159.48633 * 12 11 10 23 23 C 1.38805 * 119.97269 * 359.45097 * 6 5 4 24 24 N 1.48027 * 120.00504 * 180.25524 * 23 6 5 25 25 O 1.21808 * 119.99766 * 184.46299 * 24 23 6 26 26 O 1.21801 * 120.00135 * 4.45705 * 24 23 6 27 27 C 1.38114 * 119.98641 * 0.27454 * 23 6 5 28 28 H 1.09000 * 109.47098 * 60.00527 * 1 2 3 29 29 H 1.09006 * 109.46856 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47075 * 299.99874 * 1 2 3 31 31 H 1.07997 * 119.99712 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00102 * 180.27525 * 5 4 3 33 33 H 0.97003 * 119.99975 * 210.55084 * 7 6 5 34 34 H 0.96997 * 119.99650 * 5.22715 * 10 8 7 35 35 H 1.09006 * 109.46991 * 64.44637 * 11 10 8 36 36 H 1.08992 * 109.47166 * 304.44774 * 11 10 8 37 37 H 0.97000 * 120.00418 * 180.02562 * 16 15 13 38 38 H 1.09003 * 117.49901 * 214.97235 * 21 12 11 39 39 H 1.09000 * 117.49921 * 359.97438 * 21 12 11 40 40 H 1.09005 * 117.49809 * 359.97438 * 22 12 11 41 41 H 1.09001 * 117.50017 * 144.97262 * 22 12 11 42 42 H 1.08005 * 119.99517 * 179.97438 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2903 2.3749 0.0005 5 6 1.9166 3.6055 0.0058 6 6 3.3032 3.6785 -0.0005 7 7 3.9394 4.9273 -0.0011 8 6 3.3526 5.9829 0.5972 9 8 2.3190 5.8317 1.2196 10 7 3.9113 7.2060 0.5054 11 6 3.3383 8.3307 1.2490 12 6 4.0857 9.6155 0.8863 13 6 5.5803 9.5732 1.0747 14 1 6.2355 9.7194 0.2288 15 6 6.1112 9.3534 2.3280 16 7 7.4026 9.1475 2.4683 17 14 4.9964 9.3482 3.8269 18 1 4.5661 7.9572 4.1190 19 1 5.7342 9.8935 4.9945 20 1 3.8026 10.1896 3.5587 21 6 3.5439 10.4429 -0.2809 22 6 3.3772 10.9446 1.1548 23 6 4.0589 2.5142 -0.0006 24 7 5.5372 2.5912 -0.0016 25 8 6.2000 1.5725 -0.0837 26 8 6.0908 3.6731 0.0796 27 6 3.4313 1.2839 -0.0001 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2118 2.3180 0.0005 32 1 1.3280 4.5110 0.0107 33 1 4.8022 5.0319 -0.4319 34 1 4.6928 7.3415 -0.0529 35 1 3.4330 8.1448 2.3189 36 1 2.2848 8.4379 0.9907 37 1 7.7761 8.9925 3.3500 38 1 4.2685 10.9568 -0.9127 39 1 2.6550 10.0719 -0.7911 40 1 2.3784 10.9038 1.5894 41 1 3.9920 11.7884 1.4681 42 1 4.0192 0.3778 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345085403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:24 Heat of formation + Delta-G solvation = -19.733452 kcal Electronic energy + Delta-G solvation = -28922.627975 eV Core-core repulsion = 24679.485440 eV Total energy + Delta-G solvation = -4243.142535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.50363 -41.92374 -40.99861 -39.19836 -38.44530 -37.85777 -35.64460 -35.11230 -34.28542 -33.12412 -30.96651 -28.78379 -27.99555 -27.43406 -26.88789 -24.54989 -23.39841 -23.17122 -22.05507 -21.14018 -20.58883 -19.95884 -19.56115 -19.10591 -18.68611 -18.20221 -18.08927 -17.42434 -17.06835 -16.78280 -16.42791 -16.31355 -15.75276 -15.37220 -15.08657 -15.05149 -14.88664 -14.38986 -14.20377 -14.09664 -13.89170 -13.60159 -13.00743 -12.84147 -12.73483 -12.61265 -12.43872 -12.41543 -12.25232 -12.15360 -12.08609 -11.58800 -11.42316 -11.23631 -11.02661 -10.74808 -10.71871 -10.39065 -10.00986 -9.12794 -8.31674 -6.34420 -1.39360 -0.13998 0.11678 0.18978 1.28309 1.32706 1.36969 1.46353 1.78707 2.13369 2.25381 2.33530 2.84710 3.09123 3.15626 3.38803 3.48901 3.62264 3.76803 3.99825 4.05551 4.30006 4.34811 4.42996 4.43262 4.46194 4.54056 4.62425 4.75688 4.78391 4.82551 4.90187 4.94791 5.04832 5.07989 5.24381 5.30194 5.44332 5.55357 5.68185 5.74209 6.12170 6.30205 6.35178 6.70756 6.80309 7.25033 7.33593 8.82343 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003299 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.541689 B = 8485.918702 C = 9425.783473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.118 3.882 4 C -0.108 4.108 5 C -0.096 4.096 6 C 0.200 3.800 7 N -0.675 5.675 8 C 0.702 3.298 9 O -0.607 6.607 10 N -0.705 5.705 11 C 0.177 3.823 12 C -0.045 4.045 13 C -0.479 4.479 14 H 0.045 0.955 15 C 0.037 3.963 16 N -0.935 5.935 17 Si 0.915 3.085 18 H -0.292 1.292 19 H -0.298 1.298 20 H -0.220 1.220 21 C -0.155 4.155 22 C -0.180 4.180 23 C -0.058 4.058 24 N 0.041 4.959 25 O -0.141 6.141 26 O -0.216 6.216 27 C -0.076 4.076 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.188 0.812 32 H 0.163 0.837 33 H 0.423 0.577 34 H 0.411 0.589 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 -16.558 -7.774 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.070 3.930 4 C -0.127 4.127 5 C -0.118 4.118 6 C 0.099 3.901 7 N -0.329 5.329 8 C 0.403 3.597 9 O -0.488 6.488 10 N -0.358 5.358 11 C 0.053 3.947 12 C -0.046 4.046 13 C -0.517 4.517 14 H 0.064 0.936 15 C -0.162 4.162 16 N -0.574 5.574 17 Si 0.741 3.259 18 H -0.220 1.220 19 H -0.226 1.226 20 H -0.142 1.142 21 C -0.192 4.192 22 C -0.218 4.218 23 C -0.146 4.146 24 N 0.552 4.448 25 O -0.365 6.365 26 O -0.414 6.414 27 C -0.096 4.096 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.205 0.795 32 H 0.180 0.820 33 H 0.267 0.733 34 H 0.248 0.752 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.438 -16.662 -7.083 26.563 hybrid contribution 1.606 0.409 0.652 1.781 sum -17.832 -16.253 -6.431 24.970 Atomic orbital electron populations 1.23564 0.75253 1.06496 1.03059 1.86128 1.24198 1.24440 1.88371 1.18454 0.90369 0.85942 0.98239 1.21949 1.03121 0.89715 0.97920 1.21278 0.90465 1.00632 0.99377 1.17512 0.92716 0.82361 0.97493 1.43212 1.25207 1.06336 1.58098 1.15973 0.83366 0.80896 0.79494 1.90835 1.25249 1.84755 1.47925 1.45044 1.34014 1.06294 1.50419 1.20850 0.96042 0.84322 0.93488 1.19447 0.93240 0.88747 1.03213 1.20363 0.88933 1.48358 0.94014 0.93633 1.25554 0.95444 0.93790 1.01452 1.70023 1.13707 1.49415 1.24231 0.86277 0.81474 0.78423 0.79682 1.21971 1.22563 1.14201 1.22861 1.02125 1.03619 0.90572 1.23082 1.00956 0.98289 0.99498 1.20538 0.77771 0.95659 1.20655 1.43664 1.03937 1.00163 0.96999 1.94483 1.65055 1.25247 1.51686 1.94477 1.73747 1.16533 1.56625 1.19953 0.93541 0.95994 1.00126 0.90554 0.85721 0.91129 0.79501 0.82008 0.73304 0.75209 0.95090 0.90622 0.92744 0.89851 0.87890 0.88564 0.90042 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.32 -4.32 10.50 -93.31 -0.98 -5.30 16 3 C 0.12 1.98 6.69 22.50 0.15 2.13 16 4 C -0.11 -1.65 9.03 22.35 0.20 -1.45 16 5 C -0.10 -2.20 8.67 22.38 0.19 -2.01 16 6 C 0.20 5.62 6.32 38.09 0.24 5.86 16 7 N -0.68 -21.70 4.71 -317.06 -1.49 -23.19 16 8 C 0.70 25.74 8.32 179.05 1.49 27.23 16 9 O -0.61 -23.88 13.83 -4.02 -0.06 -23.94 16 10 N -0.71 -26.84 5.42 -478.53 -2.59 -29.43 16 11 C 0.18 7.03 5.15 86.38 0.45 7.48 16 12 C -0.05 -1.87 1.00 -52.93 -0.05 -1.92 16 13 C -0.48 -24.87 8.66 25.60 0.22 -24.64 16 14 H 0.05 2.62 8.06 -2.91 -0.02 2.60 16 15 C 0.04 2.06 5.45 84.65 0.46 2.52 16 16 N -0.93 -56.71 13.96 21.45 0.30 -56.42 16 17 Si 0.91 43.92 24.88 68.60 1.71 45.63 16 18 H -0.29 -14.62 6.99 99.48 0.70 -13.93 16 19 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 20 H -0.22 -9.33 5.92 99.48 0.59 -8.74 16 21 C -0.15 -5.27 9.92 30.59 0.30 -4.97 16 22 C -0.18 -6.52 8.36 30.59 0.26 -6.26 16 23 C -0.06 -1.58 6.86 36.48 0.25 -1.33 16 24 N 0.04 1.30 4.45 -46.20 -0.21 1.09 16 25 O -0.14 -4.40 18.46 18.88 0.35 -4.05 16 26 O -0.22 -7.86 15.93 18.89 0.30 -7.56 16 27 C -0.08 -1.60 9.49 22.35 0.21 -1.39 16 28 H 0.08 0.16 7.66 -2.39 -0.02 0.14 16 29 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.07 0.24 7.66 -2.39 -0.02 0.22 16 31 H 0.19 1.36 6.29 -2.91 -0.02 1.34 16 32 H 0.16 3.96 6.20 -2.91 -0.02 3.95 16 33 H 0.42 13.42 6.26 -92.71 -0.58 12.84 16 34 H 0.41 15.57 7.99 -92.71 -0.74 14.83 16 35 H 0.03 1.38 4.80 -2.38 -0.01 1.37 16 36 H 0.08 2.67 8.06 -2.39 -0.02 2.65 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 41 H 0.08 3.09 8.14 -2.39 -0.02 3.08 16 42 H 0.17 3.19 7.62 -2.91 -0.02 3.17 16 Total: -1.00 -69.99 355.51 2.47 -67.52 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.35 Total: 33.24 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 5.49 Total: 2.40 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.99 Total: -107.94 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.39 Total: -40.85 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.71 Total: 45.63 kcal Total: -69.99 2.47 -67.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345085403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.789 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds