Wall clock time and date at job start Tue Mar 31 2020 18:05:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34778 * 120.00109 * 2 1
4 4 O 1.21285 * 119.99663 * 0.02562 * 3 2 1
5 5 C 1.50692 * 120.00063 * 180.02562 * 3 2 1
6 6 H 1.09000 * 109.47399 * 59.99737 * 5 3 2
7 7 C 1.53006 * 109.47240 * 300.00182 * 5 3 2
8 8 N 1.46498 * 109.47444 * 179.97438 * 5 3 2
9 9 C 1.34774 * 120.00345 * 205.00175 * 8 5 3
10 10 O 1.21364 * 119.99817 * 359.97438 * 9 8 5
11 11 C 1.49320 * 120.00232 * 180.02562 * 9 8 5
12 12 O 1.21391 * 119.99609 * 359.97438 * 11 9 8
13 13 N 1.34774 * 120.00232 * 180.02562 * 11 9 8
14 14 C 1.39733 * 120.00184 * 175.49223 * 13 11 9
15 15 C 1.39000 * 120.01148 * 214.86631 * 14 13 11
16 16 C 1.37967 * 119.99303 * 179.74511 * 15 14 13
17 17 C 1.38931 * 120.00666 * 0.50611 * 16 15 14
18 18 O 1.35768 * 119.99148 * 179.74651 * 17 16 15
19 19 C 1.34798 * 116.99996 * 185.37277 * 18 17 16
20 20 H 1.08001 * 119.99755 * 354.95708 * 19 18 17
21 21 C 1.38647 * 120.00235 * 174.96493 * 19 18 17
22 22 N 1.31567 * 119.99557 * 359.97438 * 21 19 18
23 23 Si 1.86794 * 120.00377 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47042 * 59.99739 * 23 21 19
25 25 H 1.48504 * 109.47314 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.47136 * 300.00130 * 23 21 19
27 27 C 1.38936 * 120.01869 * 359.77266 * 17 16 15
28 28 C 1.37968 * 120.00208 * 359.97364 * 27 17 16
29 29 H 1.09010 * 109.47299 * 300.00218 * 1 2 3
30 30 H 1.08999 * 109.47300 * 59.99606 * 1 2 3
31 31 H 1.08994 * 109.47596 * 180.02562 * 1 2 3
32 32 H 0.97001 * 119.99560 * 179.97438 * 2 1 3
33 33 H 1.09000 * 109.46562 * 300.00068 * 7 5 3
34 34 H 1.08997 * 109.46918 * 59.99826 * 7 5 3
35 35 H 1.08994 * 109.46998 * 180.02562 * 7 5 3
36 36 H 0.97001 * 119.99774 * 25.00114 * 8 5 3
37 37 H 0.97000 * 119.99790 * 355.49343 * 13 11 9
38 38 H 1.08003 * 119.99712 * 359.97438 * 15 14 13
39 39 H 1.08000 * 119.99344 * 180.25639 * 16 15 14
40 40 H 0.97006 * 119.99660 * 179.97438 * 22 21 19
41 41 H 1.07999 * 119.99783 * 179.97438 * 27 17 16
42 42 H 1.07998 * 120.00152 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5324 2.2175 0.0005
5 6 3.6458 1.1672 -0.0006
6 1 4.0089 0.6535 -0.8908
7 6 4.1564 0.4456 1.2483
8 7 4.1343 2.5483 -0.0011
9 6 5.3560 2.8310 -0.4949
10 8 6.0518 1.9411 -0.9388
11 6 5.8540 4.2387 -0.4949
12 8 5.1582 5.1286 -0.0505
13 7 7.0756 4.5214 -0.9892
14 6 7.5042 5.8485 -1.0761
15 6 8.3097 6.2510 -2.1349
16 6 8.7283 7.5627 -2.2232
17 6 8.3535 8.4787 -1.2483
18 8 8.7699 9.7682 -1.3327
19 6 8.4653 10.5786 -0.2995
20 1 7.8446 10.2158 0.5065
21 6 8.9485 11.8778 -0.2715
22 7 9.7048 12.3195 -1.2532
23 14 8.5259 13.0010 1.1600
24 1 9.0290 12.4037 2.4231
25 1 9.1608 14.3273 0.9528
26 1 7.0522 13.1645 1.2425
27 6 7.5531 8.0755 -0.1866
28 6 7.1298 6.7652 -0.1006
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 1.9499 -0.8401 0.0004
33 1 3.7933 0.9593 2.1385
34 1 3.7930 -0.5820 1.2482
35 1 5.2463 0.4460 1.2481
36 1 3.5783 3.2595 0.3540
37 1 7.6572 3.8035 -1.2846
38 1 8.6047 5.5378 -2.8904
39 1 9.3508 7.8764 -3.0482
40 1 10.0427 13.2287 -1.2338
41 1 7.2623 8.7878 0.5713
42 1 6.5080 6.4517 0.7249
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001347680634.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:05:57
Heat of formation + Delta-G solvation = -92.994775 kcal
Electronic energy + Delta-G solvation = -27406.148261 eV
Core-core repulsion = 23159.828876 eV
Total energy + Delta-G solvation = -4246.319385 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.136 amu
Computer time = 1.72 seconds
Orbital eigenvalues (eV)
-41.15133 -40.27240 -39.19647 -38.38166 -36.61416 -35.64960 -35.22022 -33.98108
-32.20778 -31.41797 -30.25280 -28.35056 -27.45033 -25.81455 -25.14540 -23.68865
-22.32034 -21.36814 -20.80243 -20.29972 -19.24176 -18.07415 -17.68794 -17.26136
-16.93599 -16.54889 -16.20009 -16.02860 -15.63186 -15.25270 -14.59325 -14.51583
-14.41819 -14.23674 -13.87305 -13.64425 -13.62158 -13.50765 -13.00501 -12.92874
-12.89702 -12.77995 -12.59643 -12.18613 -11.85773 -11.77131 -11.59450 -11.39244
-11.02341 -10.77123 -10.46242 -10.45596 -9.78724 -9.75454 -9.68764 -9.64685
-9.21686 -8.73283 -8.24919 -7.00313 -6.46573 -4.03870 1.21244 1.98580
2.03984 2.15146 2.27474 2.71863 3.13268 3.14742 3.18125 3.20673
3.55960 3.96731 4.02552 4.36228 4.46109 4.54007 4.57738 4.69209
4.97209 5.00654 5.07784 5.20291 5.23201 5.29255 5.58599 5.64027
5.69415 5.75890 5.79230 6.04566 6.11774 6.25012 6.62557 6.71502
6.80871 6.87264 6.95781 7.02978 7.25759 7.39866 7.41389 7.57963
7.65643 7.71052 7.98177 8.08873 8.98843 9.67155 10.70902
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.021734 B = 0.001985 C = 0.001879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1287.997401 B =14101.185760 C =14900.730377
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.730 5.730
3 C 0.509 3.491
4 O -0.525 6.525
5 C 0.124 3.876
6 H 0.120 0.880
7 C -0.161 4.161
8 N -0.687 5.687
9 C 0.519 3.481
10 O -0.523 6.523
11 C 0.496 3.504
12 O -0.503 6.503
13 N -0.623 5.623
14 C 0.022 3.978
15 C -0.084 4.084
16 C -0.178 4.178
17 C 0.150 3.850
18 O -0.173 6.173
19 C -0.391 4.391
20 H 0.093 0.907
21 C 0.040 3.960
22 N -0.861 5.861
23 Si 0.942 3.058
24 H -0.269 1.269
25 H -0.278 1.278
26 H -0.269 1.269
27 C -0.222 4.222
28 C -0.060 4.060
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.078 0.922
32 H 0.405 0.595
33 H 0.068 0.932
34 H 0.074 0.926
35 H 0.079 0.921
36 H 0.424 0.576
37 H 0.414 0.586
38 H 0.118 0.882
39 H 0.124 0.876
40 H 0.271 0.729
41 H 0.132 0.868
42 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.636 -27.208 3.572 30.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.382 5.382
3 C 0.294 3.706
4 O -0.400 6.400
5 C 0.016 3.984
6 H 0.138 0.862
7 C -0.220 4.220
8 N -0.343 5.343
9 C 0.300 3.700
10 O -0.398 6.398
11 C 0.277 3.723
12 O -0.378 6.378
13 N -0.268 5.268
14 C -0.071 4.071
15 C -0.104 4.104
16 C -0.198 4.198
17 C 0.095 3.905
18 O -0.076 6.076
19 C -0.468 4.468
20 H 0.110 0.890
21 C -0.165 4.165
22 N -0.495 5.495
23 Si 0.766 3.234
24 H -0.194 1.194
25 H -0.203 1.203
26 H -0.194 1.194
27 C -0.242 4.242
28 C -0.080 4.080
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.097 0.903
32 H 0.239 0.761
33 H 0.087 0.913
34 H 0.093 0.907
35 H 0.098 0.902
36 H 0.263 0.737
37 H 0.250 0.750
38 H 0.136 0.864
39 H 0.142 0.858
40 H 0.081 0.919
41 H 0.150 0.850
42 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -12.878 -26.085 3.323 29.280
hybrid contribution -0.104 0.014 0.696 0.703
sum -12.982 -26.071 4.019 29.400
Atomic orbital electron populations
1.21597 0.78864 1.02548 1.02742 1.45685 1.08096 1.08442 1.76021
1.20594 0.89685 0.84201 0.76143 1.90779 1.69819 1.31077 1.48310
1.20840 0.90686 0.84498 1.02417 0.86228 1.22166 1.03469 1.00064
0.96259 1.45485 1.17404 1.09620 1.61793 1.20188 0.82104 0.89563
0.78174 1.90750 1.56030 1.47859 1.45188 1.19860 0.82689 0.88641
0.81072 1.90805 1.56046 1.47090 1.43876 1.42804 1.15117 1.08129
1.60787 1.17230 1.07288 0.83279 0.99261 1.20385 0.98849 0.95450
0.95750 1.19996 1.06936 0.91543 1.01285 1.19446 0.92052 0.85760
0.93202 1.83966 1.67250 1.14427 1.41940 1.21311 1.32397 0.92939
1.00110 0.88957 1.25303 0.95899 0.96719 0.98568 1.70036 1.31168
1.17511 1.30792 0.85766 0.79010 0.78751 0.79853 1.19448 1.20271
1.19416 1.21091 1.04801 0.96370 1.01893 1.20846 0.97802 0.92514
0.96805 0.91904 0.91919 0.90318 0.76119 0.91335 0.90718 0.90241
0.73687 0.74989 0.86415 0.85836 0.91909 0.85024 0.85634
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.36 10.70 59.85 0.64 1.00 16
2 N -0.73 -3.42 5.61 -67.08 -0.38 -3.79 16
3 C 0.51 4.24 7.22 -10.99 -0.08 4.16 16
4 O -0.52 -6.65 15.84 5.55 0.09 -6.56 16
5 C 0.12 0.95 2.98 -69.08 -0.21 0.74 16
6 H 0.12 0.83 7.58 -51.93 -0.39 0.44 16
7 C -0.16 -0.88 9.38 37.16 0.35 -0.53 16
8 N -0.69 -7.38 4.95 -55.41 -0.27 -7.65 16
9 C 0.52 6.49 7.85 -11.65 -0.09 6.40 16
10 O -0.52 -6.80 16.14 5.48 0.09 -6.71 16
11 C 0.50 7.44 7.73 -11.65 -0.09 7.35 16
12 O -0.50 -8.91 13.91 5.46 0.08 -8.83 16
13 N -0.62 -9.15 5.32 -10.27 -0.05 -9.21 16
14 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16
15 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16
16 C -0.18 -3.67 9.98 -39.42 -0.39 -4.07 16
17 C 0.15 3.61 6.65 -39.07 -0.26 3.35 16
18 O -0.17 -4.90 9.75 0.08 0.00 -4.90 16
19 C -0.39 -10.92 9.48 30.88 0.29 -10.63 16
20 H 0.09 2.39 5.19 -52.49 -0.27 2.12 16
21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16
22 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16
23 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16
24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16
25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16
27 C -0.22 -4.95 9.16 -39.42 -0.36 -5.32 16
28 C -0.06 -1.20 8.68 -39.40 -0.34 -1.54 16
29 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16
30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
31 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16
32 H 0.40 0.59 8.25 -40.82 -0.34 0.26 16
33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.07 0.19 7.56 -51.93 -0.39 -0.21 16
35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.42 4.99 7.26 -40.82 -0.30 4.70 16
37 H 0.41 5.01 8.30 -40.82 -0.34 4.67 16
38 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16
39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16
40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
41 H 0.13 2.94 5.63 -52.49 -0.30 2.65 16
42 H 0.13 2.43 6.23 -52.49 -0.33 2.10 16
LS Contribution 368.76 15.07 5.56 5.56
Total: -1.00 -35.23 368.76 -5.46 -40.69
By element:
Atomic # 1 Polarization: 15.02 SS G_CDS: -4.75 Total: 10.28 kcal
Atomic # 6 Polarization: 1.47 SS G_CDS: -1.56 Total: -0.08 kcal
Atomic # 7 Polarization: -45.05 SS G_CDS: 0.05 Total: -44.99 kcal
Atomic # 8 Polarization: -27.26 SS G_CDS: 0.25 Total: -27.01 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -35.23 -5.46 -40.69 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001347680634.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.303 kcal
(2) G-P(sol) polarization free energy of solvation -35.229 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.532 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.995 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.72 seconds