Wall clock time and date at job start Tue Mar 31 2020 18:05:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34778 * 120.00109 * 2 1
4 4 O 1.21285 * 119.99663 * 0.02562 * 3 2 1
5 5 C 1.50692 * 120.00063 * 180.02562 * 3 2 1
6 6 H 1.09000 * 109.47399 * 59.99737 * 5 3 2
7 7 C 1.53006 * 109.47240 * 300.00182 * 5 3 2
8 8 N 1.46498 * 109.47444 * 179.97438 * 5 3 2
9 9 C 1.34774 * 120.00345 * 205.00175 * 8 5 3
10 10 O 1.21364 * 119.99817 * 359.97438 * 9 8 5
11 11 C 1.49320 * 120.00232 * 180.02562 * 9 8 5
12 12 O 1.21391 * 119.99609 * 359.97438 * 11 9 8
13 13 N 1.34774 * 120.00232 * 180.02562 * 11 9 8
14 14 C 1.39733 * 120.00184 * 175.49223 * 13 11 9
15 15 C 1.39000 * 120.01148 * 214.86631 * 14 13 11
16 16 C 1.37967 * 119.99303 * 179.74511 * 15 14 13
17 17 C 1.38931 * 120.00666 * 0.50611 * 16 15 14
18 18 O 1.35768 * 119.99148 * 179.74651 * 17 16 15
19 19 C 1.34798 * 116.99996 * 185.37277 * 18 17 16
20 20 H 1.08001 * 119.99755 * 354.95708 * 19 18 17
21 21 C 1.38647 * 120.00235 * 174.96493 * 19 18 17
22 22 N 1.31567 * 119.99557 * 359.97438 * 21 19 18
23 23 Si 1.86794 * 120.00377 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47042 * 59.99739 * 23 21 19
25 25 H 1.48504 * 109.47314 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.47136 * 300.00130 * 23 21 19
27 27 C 1.38936 * 120.01869 * 359.77266 * 17 16 15
28 28 C 1.37968 * 120.00208 * 359.97364 * 27 17 16
29 29 H 1.09010 * 109.47299 * 300.00218 * 1 2 3
30 30 H 1.08999 * 109.47300 * 59.99606 * 1 2 3
31 31 H 1.08994 * 109.47596 * 180.02562 * 1 2 3
32 32 H 0.97001 * 119.99560 * 179.97438 * 2 1 3
33 33 H 1.09000 * 109.46562 * 300.00068 * 7 5 3
34 34 H 1.08997 * 109.46918 * 59.99826 * 7 5 3
35 35 H 1.08994 * 109.46998 * 180.02562 * 7 5 3
36 36 H 0.97001 * 119.99774 * 25.00114 * 8 5 3
37 37 H 0.97000 * 119.99790 * 355.49343 * 13 11 9
38 38 H 1.08003 * 119.99712 * 359.97438 * 15 14 13
39 39 H 1.08000 * 119.99344 * 180.25639 * 16 15 14
40 40 H 0.97006 * 119.99660 * 179.97438 * 22 21 19
41 41 H 1.07999 * 119.99783 * 179.97438 * 27 17 16
42 42 H 1.07998 * 120.00152 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5324 2.2175 0.0005
5 6 3.6458 1.1672 -0.0006
6 1 4.0089 0.6535 -0.8908
7 6 4.1564 0.4456 1.2483
8 7 4.1343 2.5483 -0.0011
9 6 5.3560 2.8310 -0.4949
10 8 6.0518 1.9411 -0.9388
11 6 5.8540 4.2387 -0.4949
12 8 5.1582 5.1286 -0.0505
13 7 7.0756 4.5214 -0.9892
14 6 7.5042 5.8485 -1.0761
15 6 8.3097 6.2510 -2.1349
16 6 8.7283 7.5627 -2.2232
17 6 8.3535 8.4787 -1.2483
18 8 8.7699 9.7682 -1.3327
19 6 8.4653 10.5786 -0.2995
20 1 7.8446 10.2158 0.5065
21 6 8.9485 11.8778 -0.2715
22 7 9.7048 12.3195 -1.2532
23 14 8.5259 13.0010 1.1600
24 1 9.0290 12.4037 2.4231
25 1 9.1608 14.3273 0.9528
26 1 7.0522 13.1645 1.2425
27 6 7.5531 8.0755 -0.1866
28 6 7.1298 6.7652 -0.1006
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 1.9499 -0.8401 0.0004
33 1 3.7933 0.9593 2.1385
34 1 3.7930 -0.5820 1.2482
35 1 5.2463 0.4460 1.2481
36 1 3.5783 3.2595 0.3540
37 1 7.6572 3.8035 -1.2846
38 1 8.6047 5.5378 -2.8904
39 1 9.3508 7.8764 -3.0482
40 1 10.0427 13.2287 -1.2338
41 1 7.2623 8.7878 0.5713
42 1 6.5080 6.4517 0.7249
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001347680634.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:05:55
Heat of formation + Delta-G solvation = -122.115510 kcal
Electronic energy + Delta-G solvation = -27407.411031 eV
Core-core repulsion = 23159.828876 eV
Total energy + Delta-G solvation = -4247.582154 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.136 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.21723 -41.24578 -40.59506 -39.72284 -38.22754 -36.53465 -35.80987 -35.39295
-34.17636 -32.14212 -31.89206 -29.92355 -27.88356 -27.46794 -26.41656 -24.64106
-23.90266 -22.77117 -21.50892 -21.41075 -20.44471 -19.76774 -19.05839 -18.45926
-18.06107 -17.65964 -17.13879 -17.10178 -16.57324 -16.29063 -16.14946 -15.93586
-15.54562 -15.44346 -15.24779 -15.07081 -14.76613 -14.67988 -14.27038 -14.13602
-13.59752 -13.55418 -13.43029 -13.36634 -13.26774 -13.09705 -12.81448 -12.72085
-12.65096 -12.43957 -12.14984 -11.47475 -11.18108 -11.13110 -10.77663 -10.58924
-10.51970 -10.22110 -9.87867 -8.70597 -8.47431 -6.14213 0.01553 0.50976
0.67104 1.08216 1.35819 1.39576 1.45805 1.51392 1.99912 2.10436
2.18073 2.53059 2.79160 3.12522 3.27209 3.48798 3.55305 3.90720
4.01712 4.06066 4.08473 4.43825 4.45004 4.55607 4.58619 4.62355
4.63983 4.72746 4.96328 5.00526 5.04523 5.07039 5.17352 5.27157
5.30844 5.34487 5.49260 5.66448 5.79493 6.00916 6.07162 6.23528
6.37299 6.60946 6.84980 6.97102 7.07667 7.74888 8.74715
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.021734 B = 0.001985 C = 0.001879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1287.997401 B =14101.185760 C =14900.730377
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.710 5.710
3 C 0.507 3.493
4 O -0.576 6.576
5 C 0.122 3.878
6 H 0.133 0.867
7 C -0.156 4.156
8 N -0.683 5.683
9 C 0.529 3.471
10 O -0.524 6.524
11 C 0.498 3.502
12 O -0.531 6.531
13 N -0.615 5.615
14 C 0.048 3.952
15 C -0.069 4.069
16 C -0.179 4.179
17 C 0.113 3.887
18 O -0.224 6.224
19 C -0.415 4.415
20 H 0.100 0.900
21 C -0.020 4.020
22 N -0.916 5.916
23 Si 1.016 2.984
24 H -0.258 1.258
25 H -0.270 1.270
26 H -0.260 1.260
27 C -0.229 4.229
28 C -0.069 4.069
29 H 0.051 0.949
30 H 0.048 0.952
31 H 0.116 0.884
32 H 0.423 0.577
33 H 0.062 0.938
34 H 0.110 0.890
35 H 0.071 0.929
36 H 0.419 0.581
37 H 0.431 0.569
38 H 0.167 0.833
39 H 0.132 0.868
40 H 0.273 0.727
41 H 0.121 0.879
42 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.648 -31.187 4.078 34.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.363 5.363
3 C 0.293 3.707
4 O -0.455 6.455
5 C 0.015 3.985
6 H 0.150 0.850
7 C -0.214 4.214
8 N -0.337 5.337
9 C 0.309 3.691
10 O -0.401 6.401
11 C 0.280 3.720
12 O -0.407 6.407
13 N -0.263 5.263
14 C -0.045 4.045
15 C -0.089 4.089
16 C -0.199 4.199
17 C 0.062 3.938
18 O -0.130 6.130
19 C -0.491 4.491
20 H 0.117 0.883
21 C -0.218 4.218
22 N -0.553 5.553
23 Si 0.835 3.165
24 H -0.182 1.182
25 H -0.194 1.194
26 H -0.185 1.185
27 C -0.249 4.249
28 C -0.089 4.089
29 H 0.070 0.930
30 H 0.067 0.933
31 H 0.134 0.866
32 H 0.261 0.739
33 H 0.081 0.919
34 H 0.128 0.872
35 H 0.090 0.910
36 H 0.257 0.743
37 H 0.271 0.729
38 H 0.184 0.816
39 H 0.150 0.850
40 H 0.082 0.918
41 H 0.139 0.861
42 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -13.909 -30.226 3.830 33.492
hybrid contribution 0.044 0.781 0.487 0.922
sum -13.864 -29.445 4.317 32.831
Atomic orbital electron populations
1.21730 0.78269 1.04625 1.01531 1.45595 1.08515 1.08240 1.73933
1.20747 0.89928 0.84403 0.75649 1.90765 1.70694 1.33003 1.51075
1.21124 0.90331 0.82852 1.04179 0.84955 1.22170 1.02898 1.01697
0.94628 1.45575 1.16513 1.11057 1.60575 1.19545 0.82718 0.88047
0.78792 1.90760 1.56236 1.47310 1.45765 1.20389 0.82262 0.89702
0.79682 1.90806 1.56808 1.48354 1.44760 1.42723 1.15598 1.07144
1.60803 1.17361 1.04941 0.84357 0.97845 1.20790 0.97172 0.94807
0.96127 1.20314 1.06674 0.92304 1.00601 1.19977 0.93393 0.85414
0.95058 1.83934 1.69816 1.16247 1.42984 1.21753 1.33002 0.93702
1.00638 0.88309 1.26539 0.95603 0.98047 1.01584 1.70170 1.33573
1.18175 1.33421 0.84682 0.79116 0.76466 0.76195 1.18203 1.19408
1.18453 1.21104 1.04930 0.97362 1.01460 1.20944 0.98153 0.91989
0.97837 0.93000 0.93334 0.86570 0.73890 0.91887 0.87154 0.90983
0.74318 0.72935 0.81582 0.85046 0.91752 0.86084 0.85072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.51 10.70 127.77 1.37 1.87 16
2 N -0.71 -4.71 5.61 -484.52 -2.72 -7.42 16
3 C 0.51 7.56 7.22 87.65 0.63 8.19 16
4 O -0.58 -14.38 15.84 -3.04 -0.05 -14.42 16
5 C 0.12 1.57 2.98 44.25 0.13 1.70 16
6 H 0.13 1.40 7.58 -2.39 -0.02 1.38 16
7 C -0.16 -1.21 9.38 71.98 0.68 -0.54 16
8 N -0.68 -13.52 4.95 -447.57 -2.21 -15.74 16
9 C 0.53 12.00 7.85 87.23 0.68 12.69 16
10 O -0.52 -11.98 16.14 -3.29 -0.05 -12.03 16
11 C 0.50 13.90 7.73 87.23 0.67 14.57 16
12 O -0.53 -18.25 13.91 -3.37 -0.05 -18.30 16
13 N -0.62 -16.26 5.32 -304.75 -1.62 -17.88 16
14 C 0.05 1.62 6.30 38.25 0.24 1.86 16
15 C -0.07 -2.24 9.96 22.39 0.22 -2.01 16
16 C -0.18 -7.34 9.98 22.37 0.22 -7.11 16
17 C 0.11 5.62 6.65 22.60 0.15 5.77 16
18 O -0.22 -13.42 9.75 -22.62 -0.22 -13.64 16
19 C -0.41 -24.38 9.48 67.92 0.64 -23.74 16
20 H 0.10 5.40 5.19 -2.91 -0.02 5.38 16
21 C -0.02 -1.12 5.49 84.83 0.47 -0.66 16
22 N -0.92 -56.06 13.67 21.61 0.30 -55.76 16
23 Si 1.02 43.44 29.55 68.60 2.03 45.47 16
24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16
25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16
26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16
27 C -0.23 -10.52 9.16 22.37 0.20 -10.32 16
28 C -0.07 -2.74 8.68 22.39 0.19 -2.54 16
29 H 0.05 0.46 8.14 -2.38 -0.02 0.45 16
30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16
32 H 0.42 -0.42 8.25 -92.71 -0.76 -1.19 16
33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
34 H 0.11 0.06 7.56 -2.39 -0.02 0.05 16
35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
36 H 0.42 9.56 7.26 -92.71 -0.67 8.89 16
37 H 0.43 8.73 8.30 -92.71 -0.77 7.96 16
38 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16
39 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16
40 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16
41 H 0.12 5.71 5.63 -2.91 -0.02 5.69 16
42 H 0.13 5.03 6.23 -2.91 -0.02 5.01 16
Total: -1.00 -82.04 368.76 0.83 -81.21
By element:
Atomic # 1 Polarization: 29.87 SS G_CDS: -1.09 Total: 28.78 kcal
Atomic # 6 Polarization: -6.78 SS G_CDS: 6.51 Total: -0.26 kcal
Atomic # 7 Polarization: -90.55 SS G_CDS: -6.25 Total: -96.80 kcal
Atomic # 8 Polarization: -58.02 SS G_CDS: -0.37 Total: -58.39 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal
Total: -82.04 0.83 -81.21 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001347680634.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.908 kcal
(2) G-P(sol) polarization free energy of solvation -82.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.116 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds