Wall clock time and date at job start Tue Mar 31 2020 19:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00071 * 2 1 4 4 C 1.53007 * 109.47142 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46923 * 65.00222 * 4 3 2 6 6 C 1.36910 * 119.99518 * 264.44301 * 5 4 3 7 7 H 1.08001 * 120.00070 * 37.40730 * 6 5 4 8 8 C 1.39027 * 119.99925 * 217.40040 * 6 5 4 9 9 N 1.31376 * 119.99799 * 22.39933 * 8 6 5 10 10 Si 1.86796 * 120.00120 * 202.39601 * 8 6 5 11 11 H 1.48504 * 109.47148 * 65.00260 * 10 8 6 12 12 H 1.48494 * 109.47183 * 185.00127 * 10 8 6 13 13 H 1.48498 * 109.47206 * 305.00326 * 10 8 6 14 14 C 1.34775 * 120.00358 * 84.44566 * 5 4 3 15 15 O 1.21597 * 120.00469 * 175.91362 * 14 5 4 16 16 C 1.47613 * 119.99799 * 355.91150 * 14 5 4 17 17 C 1.41546 * 126.52479 * 175.12239 * 16 14 5 18 18 C 1.35348 * 105.50214 * 179.97438 * 17 16 14 19 19 N 1.35054 * 107.24368 * 0.26677 * 18 17 16 20 20 C 1.46496 * 124.88171 * 179.69933 * 19 18 17 21 21 C 1.52994 * 109.47386 * 124.51861 * 20 19 18 22 22 C 1.52998 * 109.47247 * 184.96607 * 21 20 19 23 23 F 1.39910 * 109.46955 * 60.00389 * 22 21 20 24 24 F 1.39899 * 109.47394 * 180.02562 * 22 21 20 25 25 F 1.39893 * 109.47383 * 300.00173 * 22 21 20 26 26 N 1.28465 * 110.23737 * 359.54192 * 19 18 17 27 27 H 1.09004 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47597 * 300.00446 * 1 2 3 29 29 H 1.09001 * 109.46954 * 59.99996 * 1 2 3 30 30 H 1.08999 * 109.47138 * 60.00146 * 3 2 1 31 31 H 1.08992 * 109.47368 * 299.99900 * 3 2 1 32 32 H 1.09002 * 109.47343 * 304.99826 * 4 3 2 33 33 H 1.09003 * 109.47151 * 184.99863 * 4 3 2 34 34 H 0.96995 * 120.00054 * 184.94804 * 9 8 6 35 35 H 1.07996 * 127.24470 * 359.94854 * 17 16 14 36 36 H 1.07997 * 126.37831 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47092 * 244.52176 * 20 19 18 38 38 H 1.09003 * 109.46830 * 4.51786 * 20 19 18 39 39 H 1.08994 * 109.47226 * 304.97117 * 21 20 19 40 40 H 1.09000 * 109.47234 * 64.96584 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2072 -0.7846 -1.3020 7 1 3.5704 -1.4626 -0.7532 8 6 5.2611 -1.2813 -2.0607 9 7 6.2772 -0.5047 -2.3614 10 14 5.2325 -3.0529 -2.6522 11 1 4.1092 -3.2383 -3.6058 12 1 6.5150 -3.3691 -3.3306 13 1 5.0503 -3.9598 -1.4905 14 6 4.1555 1.3204 -2.3519 15 8 4.5925 0.8190 -3.3698 16 6 3.8209 2.7578 -2.3221 17 6 4.0420 3.6960 -3.3587 18 6 3.5791 4.8758 -2.8836 19 7 3.1162 4.6507 -1.6350 20 6 2.5323 5.6714 -0.7613 21 6 1.1374 5.2260 -0.3180 22 6 0.4784 6.3441 0.4921 23 9 0.3715 7.4928 -0.2996 24 9 -0.7969 5.9367 0.8979 25 9 1.2581 6.6254 1.6190 26 7 3.2585 3.4122 -1.3249 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 6.9773 -0.8281 -2.9498 35 1 4.4868 3.5096 -4.3249 36 1 3.5839 5.8221 -3.4041 37 1 3.1664 5.8055 0.1150 38 1 2.4575 6.6141 -1.3034 39 1 0.5298 5.0068 -1.1960 40 1 1.2206 4.3311 0.2987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349930051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:54 Heat of formation + Delta-G solvation = -144.348845 kcal Electronic energy + Delta-G solvation = -30328.336286 eV Core-core repulsion = 25537.933281 eV Total energy + Delta-G solvation = -4790.403005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.12967 -48.63223 -48.59809 -43.46124 -40.03065 -38.50772 -36.05760 -35.88926 -34.02662 -31.86553 -31.53630 -30.32864 -27.81091 -27.07766 -26.28147 -24.37509 -23.63064 -22.72733 -22.00000 -20.82322 -19.57207 -19.53907 -18.72832 -18.47845 -17.98044 -17.46268 -17.04521 -16.87906 -16.49580 -16.33561 -15.92862 -15.70553 -15.61439 -15.47517 -15.06963 -14.97023 -14.75609 -14.74815 -14.71575 -14.38260 -14.35532 -13.86338 -13.55787 -13.53980 -13.16954 -12.96364 -12.89910 -12.75764 -12.64588 -12.53827 -12.47900 -12.09251 -11.92248 -11.44218 -10.86092 -10.45854 -10.13647 -9.95605 -9.85436 -9.07887 -8.11132 -5.85500 0.87603 1.35831 1.39977 1.44501 1.51356 1.54235 1.91256 2.42036 2.81773 2.86222 2.96334 3.03026 3.07977 3.22601 3.40434 3.51815 3.72966 3.90748 4.09230 4.16004 4.27993 4.36259 4.48606 4.54297 4.56641 4.61395 4.66222 4.76182 4.82304 4.88977 4.95429 4.97276 5.13686 5.52251 5.60158 6.02181 6.28895 6.45853 7.01386 7.06955 7.32050 7.74058 8.40647 8.93078 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003717 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.227037 B = 7531.347232 C = 8692.371600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.072 3.928 4 C 0.112 3.888 5 N -0.440 5.440 6 C -0.347 4.347 7 H 0.084 0.916 8 C 0.014 3.986 9 N -0.853 5.853 10 Si 0.967 3.033 11 H -0.285 1.285 12 H -0.286 1.286 13 H -0.257 1.257 14 C 0.513 3.487 15 O -0.578 6.578 16 C -0.011 4.011 17 C -0.222 4.222 18 C 0.014 3.986 19 N -0.291 5.291 20 C 0.119 3.881 21 C -0.179 4.179 22 C 0.469 3.531 23 F -0.181 7.181 24 F -0.187 7.187 25 F -0.184 7.184 26 N -0.277 5.277 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.257 0.743 35 H 0.143 0.857 36 H 0.230 0.770 37 H 0.115 0.885 38 H 0.149 0.851 39 H 0.124 0.876 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 18.813 6.473 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.332 6.332 3 C -0.005 4.005 4 C -0.012 4.012 5 N -0.159 5.159 6 C -0.474 4.474 7 H 0.102 0.898 8 C -0.193 4.193 9 N -0.489 5.489 10 Si 0.791 3.209 11 H -0.211 1.211 12 H -0.212 1.212 13 H -0.181 1.181 14 C 0.301 3.699 15 O -0.458 6.458 16 C -0.170 4.170 17 C -0.251 4.251 18 C -0.129 4.129 19 N -0.078 5.078 20 C 0.000 4.000 21 C -0.218 4.218 22 C 0.415 3.585 23 F -0.163 7.163 24 F -0.168 7.168 25 F -0.165 7.165 26 N -0.113 5.113 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.247 0.753 37 H 0.133 0.867 38 H 0.167 0.833 39 H 0.142 0.858 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.033 18.364 7.147 23.626 hybrid contribution 0.345 -0.602 -1.211 1.395 sum -12.688 17.763 5.936 22.622 Atomic orbital electron populations 1.22830 0.80515 1.03151 1.00235 1.88006 1.20671 1.29176 1.95391 1.22847 0.93505 0.83880 1.00249 1.21790 0.93489 0.98609 0.87320 1.43270 1.58630 1.06884 1.07133 1.19342 1.11347 0.82199 1.34557 0.89820 1.25958 0.92987 1.02157 0.98162 1.70059 1.07836 1.39565 1.31410 0.85427 0.76751 0.79839 0.78834 1.21121 1.21154 1.18123 1.17354 0.84064 0.84399 0.84085 1.90564 1.48175 1.73406 1.33657 1.22313 1.05339 0.95271 0.94089 1.21877 1.09199 0.92594 1.01380 1.23289 1.01922 1.01072 0.86604 1.45724 1.43569 1.06065 1.12430 1.22133 0.92475 0.89162 0.96250 1.23124 0.97713 0.97603 1.03382 1.20183 0.76727 0.83061 0.78572 1.93210 1.96054 1.53258 1.73732 1.93207 1.41952 1.90371 1.91311 1.93216 1.74528 1.94467 1.54318 1.73664 1.20466 0.92355 1.24825 0.89409 0.92282 0.94695 0.90771 0.93839 0.91951 0.88616 0.93329 0.83886 0.75320 0.86687 0.83313 0.85779 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -16.07 10.36 -148.98 -1.54 -17.62 16 3 C 0.07 2.55 5.55 71.98 0.40 2.95 16 4 C 0.11 4.78 5.34 86.38 0.46 5.25 16 5 N -0.44 -23.98 2.51 -639.03 -1.60 -25.58 16 6 C -0.35 -20.62 9.08 84.09 0.76 -19.85 16 7 H 0.08 4.90 7.84 -2.91 -0.02 4.88 16 8 C 0.01 0.85 4.27 84.95 0.36 1.22 16 9 N -0.85 -54.67 11.24 21.68 0.24 -54.43 16 10 Si 0.97 48.19 29.61 68.60 2.03 50.22 16 11 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.51 28.83 7.06 86.72 0.61 29.45 16 15 O -0.58 -37.62 13.93 -4.02 -0.06 -37.67 16 16 C -0.01 -0.46 6.53 42.43 0.28 -0.18 16 17 C -0.22 -7.91 10.81 22.42 0.24 -7.67 16 18 C 0.01 0.32 11.40 83.53 0.95 1.27 16 19 N -0.29 -6.57 3.40 -347.97 -1.18 -7.75 16 20 C 0.12 1.40 6.15 86.38 0.53 1.93 16 21 C -0.18 -2.09 5.35 30.59 0.16 -1.93 16 22 C 0.47 5.67 3.16 71.98 0.23 5.89 16 23 F -0.18 -2.15 16.71 44.97 0.75 -1.40 16 24 F -0.19 -2.86 17.32 44.97 0.78 -2.08 16 25 F -0.18 -2.54 16.89 44.97 0.76 -1.78 16 26 N -0.28 -9.12 6.65 -48.19 -0.32 -9.44 16 27 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.59 6.54 -2.39 -0.02 1.57 16 32 H 0.06 2.71 8.00 -2.39 -0.02 2.69 16 33 H 0.10 3.84 5.83 -2.39 -0.01 3.83 16 34 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.14 5.29 8.06 -2.91 -0.02 5.27 16 36 H 0.23 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.12 1.20 7.94 -2.39 -0.02 1.18 16 38 H 0.15 0.68 7.56 -2.39 -0.02 0.66 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -85.33 352.66 7.18 -78.16 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.08 Total: 9.00 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.24 Total: 20.37 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -2.87 Total: -97.20 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -1.60 Total: -55.29 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 2.29 Total: -5.26 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -85.33 7.18 -78.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349930051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.192 kcal (2) G-P(sol) polarization free energy of solvation -85.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds