Wall clock time and date at job start Tue Mar 31 2020 19:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36009 * 117.00235 * 2 1 4 4 C 1.35855 * 120.31433 * 359.97438 * 3 2 1 5 5 N 1.35434 * 120.77950 * 180.02562 * 4 3 2 6 6 H 0.96996 * 119.29731 * 179.97438 * 5 4 3 7 7 C 1.36429 * 121.40752 * 359.97438 * 5 4 3 8 8 C 1.48080 * 119.71621 * 179.97438 * 7 5 4 9 9 O 1.21510 * 119.99455 * 152.72294 * 8 7 5 10 10 N 1.34769 * 119.99839 * 332.72510 * 8 7 5 11 11 C 1.46965 * 120.59895 * 353.24313 * 10 8 7 12 12 C 1.53377 * 108.63411 * 235.20569 * 11 10 8 13 13 N 1.46969 * 108.63323 * 310.57508 * 12 11 10 14 14 C 1.34779 * 120.58746 * 235.22505 * 13 12 11 15 15 O 1.21690 * 119.99267 * 185.14866 * 14 13 12 16 16 C 1.46371 * 120.00458 * 5.14907 * 14 13 12 17 17 H 1.08001 * 119.99927 * 5.49899 * 16 14 13 18 18 C 1.40046 * 120.00040 * 185.50395 * 16 14 13 19 19 N 1.30667 * 120.00188 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99848 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47295 * 59.99829 * 20 18 16 22 22 H 1.48504 * 109.46812 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46830 * 299.99582 * 20 18 16 24 24 C 1.46955 * 118.81278 * 55.22676 * 13 12 11 25 25 C 1.46974 * 120.59042 * 173.22270 * 10 8 7 26 26 C 1.36174 * 120.56315 * 0.25972 * 7 5 4 27 27 C 1.41576 * 120.31675 * 180.02562 * 3 2 1 28 28 O 1.22263 * 120.65360 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46683 * 300.00233 * 1 2 3 31 31 H 1.08996 * 109.46946 * 59.99984 * 1 2 3 32 32 H 1.08001 * 119.60646 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.60652 * 354.94558 * 11 10 8 34 34 H 1.08996 * 109.61377 * 115.46022 * 11 10 8 35 35 H 1.09004 * 109.60564 * 70.31790 * 12 11 10 36 36 H 1.08992 * 109.60712 * 190.82899 * 12 11 10 37 37 H 0.96999 * 120.00284 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.61134 * 185.02971 * 24 13 12 39 39 H 1.08994 * 109.75392 * 64.60248 * 24 13 12 40 40 H 1.09006 * 109.60691 * 244.53790 * 25 10 8 41 41 H 1.08995 * 109.60813 * 5.04606 * 25 10 8 42 42 H 1.08003 * 120.40582 * 179.72467 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5669 -0.0010 6 1 1.3733 4.3695 -0.0018 7 6 3.2774 3.6827 -0.0006 8 6 3.8996 5.0265 -0.0017 9 8 5.0034 5.1852 0.4809 10 7 3.2416 6.0732 -0.5380 11 6 1.9747 5.8725 -1.2554 12 6 2.1057 6.4757 -2.6595 13 7 2.6420 7.8385 -2.5369 14 6 1.9838 8.8854 -3.0729 15 8 2.4823 9.9952 -3.0473 16 6 0.6694 8.6875 -3.6858 17 1 0.1875 7.7225 -3.6304 18 6 0.0366 9.7494 -4.3441 19 7 0.6194 10.9170 -4.4107 20 14 -1.6412 9.4969 -5.1256 21 1 -2.6166 9.0889 -4.0829 22 1 -2.0899 10.7649 -5.7549 23 1 -1.5504 8.4361 -6.1608 24 6 3.9088 8.0393 -1.8196 25 6 3.7779 7.4361 -0.4156 26 6 4.0669 2.5732 -0.0048 27 6 3.4599 1.2937 -0.0005 28 8 4.1431 0.2797 -0.0015 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2345 2.2973 -0.0005 33 1 1.7638 4.8060 -1.3337 34 1 1.1671 6.3692 -0.7178 35 1 2.7850 5.8676 -3.2569 36 1 1.1260 6.5096 -3.1358 37 1 0.1813 11.6524 -4.8670 38 1 4.1199 9.1058 -1.7413 39 1 4.7184 7.5447 -2.3561 40 1 3.0987 8.0442 0.1820 41 1 4.7577 7.4022 0.0609 42 1 5.1427 2.6679 -0.0089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362118634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:22 Heat of formation + Delta-G solvation = -58.817192 kcal Electronic energy + Delta-G solvation = -29118.927390 eV Core-core repulsion = 24874.090056 eV Total energy + Delta-G solvation = -4244.837333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.91155 -40.19337 -38.51662 -38.09954 -37.86679 -36.20334 -33.39420 -32.67921 -31.90978 -31.76859 -30.55834 -28.02454 -27.77640 -26.39681 -24.54560 -23.87553 -23.27333 -22.16936 -21.02523 -19.60353 -18.87448 -18.29866 -17.62940 -16.68862 -16.58067 -16.36032 -16.22996 -15.81816 -15.54036 -15.47976 -14.82155 -14.70287 -14.55324 -14.43481 -14.35359 -14.19621 -13.75830 -13.47412 -13.27312 -13.03133 -12.73394 -12.17604 -11.91172 -11.82108 -11.74852 -11.62162 -11.39946 -11.27500 -11.13751 -10.96401 -10.42938 -10.40201 -10.29754 -9.73145 -9.69250 -9.13925 -8.99717 -7.92725 -7.83113 -7.50705 -6.40124 -4.87875 0.46769 0.90720 2.20102 2.40139 2.70692 2.94332 2.99894 3.05873 3.08119 3.45706 3.80701 3.88982 4.13164 4.18904 4.34344 4.36981 4.61601 4.72226 4.78041 4.79478 4.94800 5.11177 5.13011 5.21705 5.27941 5.34961 5.45458 5.58674 5.69067 5.73400 5.87297 6.02309 6.07485 6.25017 6.29457 6.37786 6.41792 6.89435 7.01786 7.22768 7.27701 7.67359 7.80353 7.84698 8.06994 8.80467 9.15098 10.34312 10.53072 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.003144 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.617796 B = 8903.105980 C =10560.846098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.024 3.976 5 N -0.567 5.567 6 H 0.429 0.571 7 C 0.131 3.869 8 C 0.555 3.445 9 O -0.510 6.510 10 N -0.597 5.597 11 C 0.054 3.946 12 C 0.112 3.888 13 N -0.643 5.643 14 C 0.558 3.442 15 O -0.572 6.572 16 C -0.547 4.547 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.764 5.764 20 Si 0.907 3.093 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.106 3.894 25 C 0.099 3.901 26 C -0.216 4.216 27 C 0.402 3.598 28 O -0.498 6.498 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.111 0.889 37 H 0.272 0.728 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 -14.318 8.037 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.083 4.083 4 C -0.103 4.103 5 N -0.188 5.188 6 H 0.274 0.726 7 C 0.019 3.981 8 C 0.340 3.660 9 O -0.384 6.384 10 N -0.330 5.330 11 C -0.070 4.070 12 C -0.014 4.014 13 N -0.382 5.382 14 C 0.365 3.635 15 O -0.454 6.454 16 C -0.583 4.583 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.392 5.392 20 Si 0.732 3.268 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.019 4.019 25 C -0.023 4.023 26 C -0.243 4.243 27 C 0.291 3.709 28 O -0.381 6.381 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.188 0.812 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.715 -14.118 8.236 16.762 hybrid contribution -1.635 0.320 -0.433 1.721 sum -5.349 -13.798 7.804 16.730 Atomic orbital electron populations 1.23148 0.79051 1.04555 1.01049 1.86277 1.20413 1.24300 1.89005 1.20425 0.94784 0.84708 1.08375 1.21728 0.98950 0.84303 1.05322 1.41783 1.05312 1.08998 1.62659 0.72636 1.20341 0.82988 0.95691 0.99080 1.17991 0.85520 0.82782 0.79663 1.90842 1.18186 1.83234 1.46151 1.48128 1.23753 1.07640 1.53478 1.23041 0.85759 1.01827 0.96390 1.21755 1.01823 0.84924 0.92886 1.48232 1.23150 1.06558 1.60221 1.18305 0.85524 0.82026 0.77658 1.90617 1.69558 1.23705 1.61521 1.20866 1.01754 0.97855 1.37816 0.90971 1.25724 0.98529 0.94436 0.94577 1.69975 1.36450 1.01182 1.31605 0.86435 0.82149 0.78480 0.79750 1.19225 1.20429 1.19181 1.21521 0.88032 1.02357 0.89977 1.22265 1.00711 0.79976 0.99390 1.22422 1.02080 0.90392 1.09387 1.16777 0.86144 0.89750 0.78205 1.90858 1.65733 1.37531 1.44022 0.87897 0.92734 0.92540 0.81176 0.88767 0.89576 0.93002 0.87125 0.91757 0.88212 0.93123 0.90496 0.88335 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.29 -3.23 10.33 -35.59 -0.37 -3.60 16 3 C -0.03 -0.35 6.71 -39.16 -0.26 -0.62 16 4 C 0.02 0.17 10.22 -16.82 -0.17 0.00 16 5 N -0.57 -4.27 3.81 -9.58 -0.04 -4.31 16 6 H 0.43 2.35 5.60 -40.82 -0.23 2.12 16 7 C 0.13 1.42 6.18 -82.53 -0.51 0.91 16 8 C 0.56 7.07 7.52 -12.23 -0.09 6.98 16 9 O -0.51 -8.04 16.01 5.36 0.09 -7.95 16 10 N -0.60 -7.30 2.95 -173.51 -0.51 -7.81 16 11 C 0.05 0.56 4.98 -3.59 -0.02 0.55 16 12 C 0.11 1.63 6.51 -3.59 -0.02 1.61 16 13 N -0.64 -12.50 2.95 -174.15 -0.51 -13.01 16 14 C 0.56 14.17 7.61 -12.99 -0.10 14.07 16 15 O -0.57 -17.01 14.47 5.20 0.08 -16.94 16 16 C -0.55 -13.53 8.84 -35.63 -0.32 -13.84 16 17 H 0.07 1.55 5.69 -52.49 -0.30 1.25 16 18 C 0.09 2.23 5.50 -17.37 -0.10 2.13 16 19 N -0.76 -21.24 11.84 55.55 0.66 -20.58 16 20 Si 0.91 18.09 29.56 -169.99 -5.02 13.06 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 C 0.11 1.82 6.58 -3.60 -0.02 1.79 16 25 C 0.10 1.37 6.60 -3.59 -0.02 1.34 16 26 C -0.22 -2.73 9.52 -39.03 -0.37 -3.10 16 27 C 0.40 5.73 6.78 -37.02 -0.25 5.48 16 28 O -0.50 -9.05 17.71 -11.15 -0.20 -9.25 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 32 H 0.17 0.56 6.21 -52.49 -0.33 0.23 16 33 H 0.09 0.72 4.31 -51.93 -0.22 0.50 16 34 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.64 5.30 -51.93 -0.28 1.36 16 37 H 0.27 6.88 8.29 -40.82 -0.34 6.55 16 38 H 0.10 1.92 7.02 -51.93 -0.36 1.55 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.32 6.99 -51.93 -0.36 0.96 16 42 H 0.17 2.16 7.82 -52.48 -0.41 1.75 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -37.36 347.56 -6.39 -43.75 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.53 Total: 3.02 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: -1.27 Total: 18.38 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.40 Total: -45.71 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.40 Total: -37.74 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.36 -6.39 -43.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362118634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.068 kcal (2) G-P(sol) polarization free energy of solvation -37.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds