Wall clock time and date at job start Tue Mar 31 2020 19:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36009 * 117.00235 * 2 1 4 4 C 1.35855 * 120.31433 * 359.97438 * 3 2 1 5 5 N 1.35434 * 120.77950 * 180.02562 * 4 3 2 6 6 H 0.96996 * 119.29731 * 179.97438 * 5 4 3 7 7 C 1.36429 * 121.40752 * 359.97438 * 5 4 3 8 8 C 1.48080 * 119.71621 * 179.97438 * 7 5 4 9 9 O 1.21510 * 119.99455 * 152.72294 * 8 7 5 10 10 N 1.34769 * 119.99839 * 332.72510 * 8 7 5 11 11 C 1.46965 * 120.59895 * 353.24313 * 10 8 7 12 12 C 1.53377 * 108.63411 * 235.20569 * 11 10 8 13 13 N 1.46969 * 108.63323 * 310.57508 * 12 11 10 14 14 C 1.34779 * 120.58746 * 235.22505 * 13 12 11 15 15 O 1.21690 * 119.99267 * 185.14866 * 14 13 12 16 16 C 1.46371 * 120.00458 * 5.14907 * 14 13 12 17 17 H 1.08001 * 119.99927 * 5.49899 * 16 14 13 18 18 C 1.40046 * 120.00040 * 185.50395 * 16 14 13 19 19 N 1.30667 * 120.00188 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99848 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47295 * 59.99829 * 20 18 16 22 22 H 1.48504 * 109.46812 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46830 * 299.99582 * 20 18 16 24 24 C 1.46955 * 118.81278 * 55.22676 * 13 12 11 25 25 C 1.46974 * 120.59042 * 173.22270 * 10 8 7 26 26 C 1.36174 * 120.56315 * 0.25972 * 7 5 4 27 27 C 1.41576 * 120.31675 * 180.02562 * 3 2 1 28 28 O 1.22263 * 120.65360 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46683 * 300.00233 * 1 2 3 31 31 H 1.08996 * 109.46946 * 59.99984 * 1 2 3 32 32 H 1.08001 * 119.60646 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.60652 * 354.94558 * 11 10 8 34 34 H 1.08996 * 109.61377 * 115.46022 * 11 10 8 35 35 H 1.09004 * 109.60564 * 70.31790 * 12 11 10 36 36 H 1.08992 * 109.60712 * 190.82899 * 12 11 10 37 37 H 0.96999 * 120.00284 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.61134 * 185.02971 * 24 13 12 39 39 H 1.08994 * 109.75392 * 64.60248 * 24 13 12 40 40 H 1.09006 * 109.60691 * 244.53790 * 25 10 8 41 41 H 1.08995 * 109.60813 * 5.04606 * 25 10 8 42 42 H 1.08003 * 120.40582 * 179.72467 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5669 -0.0010 6 1 1.3733 4.3695 -0.0018 7 6 3.2774 3.6827 -0.0006 8 6 3.8996 5.0265 -0.0017 9 8 5.0034 5.1852 0.4809 10 7 3.2416 6.0732 -0.5380 11 6 1.9747 5.8725 -1.2554 12 6 2.1057 6.4757 -2.6595 13 7 2.6420 7.8385 -2.5369 14 6 1.9838 8.8854 -3.0729 15 8 2.4823 9.9952 -3.0473 16 6 0.6694 8.6875 -3.6858 17 1 0.1875 7.7225 -3.6304 18 6 0.0366 9.7494 -4.3441 19 7 0.6194 10.9170 -4.4107 20 14 -1.6412 9.4969 -5.1256 21 1 -2.6166 9.0889 -4.0829 22 1 -2.0899 10.7649 -5.7549 23 1 -1.5504 8.4361 -6.1608 24 6 3.9088 8.0393 -1.8196 25 6 3.7779 7.4361 -0.4156 26 6 4.0669 2.5732 -0.0048 27 6 3.4599 1.2937 -0.0005 28 8 4.1431 0.2797 -0.0015 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2345 2.2973 -0.0005 33 1 1.7638 4.8060 -1.3337 34 1 1.1671 6.3692 -0.7178 35 1 2.7850 5.8676 -3.2569 36 1 1.1260 6.5096 -3.1358 37 1 0.1813 11.6524 -4.8670 38 1 4.1199 9.1058 -1.7413 39 1 4.7184 7.5447 -2.3561 40 1 3.0987 8.0442 0.1820 41 1 4.7577 7.4022 0.0609 42 1 5.1427 2.6679 -0.0089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362118634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:21 Heat of formation + Delta-G solvation = -87.269271 kcal Electronic energy + Delta-G solvation = -29120.161164 eV Core-core repulsion = 24874.090056 eV Total energy + Delta-G solvation = -4246.071108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83275 -41.20721 -39.82331 -39.08250 -38.86013 -37.71479 -34.92649 -34.51544 -32.94362 -32.82142 -31.51750 -29.29104 -28.47332 -27.95767 -25.65986 -24.99626 -24.13955 -23.44909 -22.16454 -20.90186 -19.84735 -19.35988 -18.69101 -18.03758 -17.74294 -17.48764 -17.26030 -17.01489 -16.58368 -16.44099 -16.24072 -15.92346 -15.70180 -15.54794 -15.31532 -15.25124 -14.74767 -14.61206 -14.47695 -14.24274 -13.86281 -13.58753 -13.41744 -13.14806 -12.88517 -12.66925 -12.47181 -12.37900 -12.32896 -12.23275 -12.01504 -11.99027 -11.51116 -10.88915 -10.73687 -10.57350 -10.25555 -9.78563 -9.07900 -8.77451 -8.26703 -6.81845 -0.51283 0.12465 1.30605 1.32945 1.45913 1.47984 1.59743 1.76895 2.26018 2.31548 2.48498 2.52661 2.74963 2.90497 3.53300 3.59877 3.64746 3.69517 3.84177 3.86292 4.03630 4.21478 4.31222 4.34795 4.41344 4.43576 4.51454 4.57093 4.59791 4.72305 4.85062 4.86076 4.99540 4.99719 5.13385 5.40582 5.41895 5.69868 5.72724 5.98292 6.11941 6.27887 6.33553 6.62150 6.89845 6.90813 7.40020 8.47411 8.69026 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.003144 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.617796 B = 8903.105980 C =10560.846098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.323 6.323 3 C -0.057 4.057 4 C 0.069 3.931 5 N -0.542 5.542 6 H 0.446 0.554 7 C 0.148 3.852 8 C 0.561 3.439 9 O -0.541 6.541 10 N -0.593 5.593 11 C 0.062 3.938 12 C 0.103 3.897 13 N -0.644 5.644 14 C 0.542 3.458 15 O -0.631 6.631 16 C -0.563 4.563 17 H 0.106 0.894 18 C 0.029 3.971 19 N -0.825 5.825 20 Si 0.993 3.007 21 H -0.247 1.247 22 H -0.286 1.286 23 H -0.253 1.253 24 C 0.106 3.894 25 C 0.113 3.887 26 C -0.229 4.229 27 C 0.381 3.619 28 O -0.566 6.566 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.272 0.728 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 -15.775 8.377 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.236 6.236 3 C -0.107 4.107 4 C -0.059 4.059 5 N -0.161 5.161 6 H 0.294 0.706 7 C 0.034 3.966 8 C 0.348 3.652 9 O -0.418 6.418 10 N -0.325 5.325 11 C -0.061 4.061 12 C -0.021 4.021 13 N -0.381 5.381 14 C 0.349 3.651 15 O -0.518 6.518 16 C -0.599 4.599 17 H 0.124 0.876 18 C -0.186 4.186 19 N -0.455 5.455 20 Si 0.813 3.187 21 H -0.170 1.170 22 H -0.212 1.212 23 H -0.177 1.177 24 C -0.018 4.018 25 C -0.010 4.010 26 C -0.257 4.257 27 C 0.276 3.724 28 O -0.456 6.456 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.147 0.853 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.002 -15.608 8.600 19.534 hybrid contribution -0.321 0.813 -0.534 1.024 sum -8.322 -14.795 8.065 18.794 Atomic orbital electron populations 1.23525 0.76195 1.06058 1.03165 1.86239 1.23420 1.24556 1.89414 1.20148 0.93585 0.86330 1.10652 1.22364 1.00793 0.82287 1.00474 1.41896 1.04132 1.10250 1.59861 0.70610 1.19875 0.84199 0.93808 0.98737 1.18110 0.84969 0.83159 0.78993 1.90843 1.19709 1.83722 1.47492 1.48110 1.24268 1.06791 1.53374 1.23153 0.85357 1.03834 0.93770 1.22017 1.01849 0.82334 0.95870 1.48031 1.23271 1.07525 1.59270 1.18741 0.86336 0.82322 0.77741 1.90574 1.71000 1.26541 1.63723 1.21464 1.01815 0.99366 1.37250 0.87586 1.26992 1.03199 0.93727 0.94725 1.70185 1.39065 1.02726 1.33504 0.85128 0.76211 0.78279 0.79100 1.17037 1.21160 1.17692 1.21527 0.87291 1.01026 0.92001 1.22001 1.01452 0.80733 0.96802 1.22236 1.01845 0.90786 1.10807 1.17252 0.88003 0.89308 0.77792 1.90816 1.67242 1.39126 1.48462 0.87162 0.90390 0.90255 0.75604 0.85347 0.87110 0.92415 0.86729 0.91784 0.91173 0.92985 0.89784 0.87935 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.14 16 2 O -0.32 -6.63 10.33 -78.52 -0.81 -7.44 16 3 C -0.06 -1.13 6.71 22.54 0.15 -0.98 16 4 C 0.07 0.60 10.22 83.58 0.85 1.46 16 5 N -0.54 -5.22 3.81 -184.21 -0.70 -5.92 16 6 H 0.45 1.74 5.60 -92.71 -0.52 1.22 16 7 C 0.15 2.78 6.18 40.56 0.25 3.03 16 8 C 0.56 12.97 7.52 86.86 0.65 13.62 16 9 O -0.54 -16.58 16.01 -3.75 -0.06 -16.64 16 10 N -0.59 -12.68 2.95 -821.16 -2.42 -15.10 16 11 C 0.06 0.99 4.98 86.42 0.43 1.42 16 12 C 0.10 2.68 6.51 86.42 0.56 3.24 16 13 N -0.64 -24.52 2.95 -823.12 -2.43 -26.94 16 14 C 0.54 27.75 7.61 86.36 0.66 28.41 16 15 O -0.63 -39.18 14.47 -4.32 -0.06 -39.24 16 16 C -0.56 -27.20 8.84 24.83 0.22 -26.98 16 17 H 0.11 4.19 5.69 -2.91 -0.02 4.18 16 18 C 0.03 1.44 5.50 85.30 0.47 1.91 16 19 N -0.83 -47.09 11.84 21.83 0.26 -46.84 16 20 Si 0.99 35.74 29.56 68.60 2.03 37.77 16 21 H -0.25 -8.00 7.11 99.48 0.71 -7.30 16 22 H -0.29 -10.49 7.11 99.48 0.71 -9.78 16 23 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 24 C 0.11 3.66 6.58 86.42 0.57 4.23 16 25 C 0.11 2.96 6.60 86.41 0.57 3.53 16 26 C -0.23 -5.76 9.52 22.62 0.22 -5.55 16 27 C 0.38 11.00 6.78 23.93 0.16 11.17 16 28 O -0.57 -22.05 17.71 8.95 0.16 -21.89 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.17 7.66 -2.39 -0.02 0.15 16 31 H 0.08 0.19 7.66 -2.39 -0.02 0.17 16 32 H 0.23 -0.42 6.21 -2.91 -0.02 -0.44 16 33 H 0.13 1.14 4.31 -2.39 -0.01 1.13 16 34 H 0.11 1.40 8.13 -2.39 -0.02 1.38 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 36 H 0.11 2.91 5.30 -2.39 -0.01 2.90 16 37 H 0.27 14.26 8.29 -92.71 -0.77 13.50 16 38 H 0.07 2.85 7.02 -2.39 -0.02 2.83 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.10 2.66 6.99 -2.39 -0.02 2.64 16 42 H 0.15 4.15 7.82 -2.91 -0.02 4.13 16 Total: -1.00 -91.19 347.56 3.43 -87.76 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.58 Total: 14.82 kcal Atomic # 6 Polarization: 32.77 SS G_CDS: 6.88 Total: 39.65 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -5.29 Total: -94.80 kcal Atomic # 8 Polarization: -84.43 SS G_CDS: -0.77 Total: -85.21 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -91.19 3.43 -87.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362118634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.495 kcal (2) G-P(sol) polarization free energy of solvation -91.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds