Wall clock time and date at job start Tue Mar 31 2020 19:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34676 * 117.00349 * 2 1 4 4 O 1.21439 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.48050 * 120.00281 * 179.97438 * 3 2 1 6 6 C 1.39211 * 119.68886 * 179.97438 * 5 3 2 7 7 C 1.38763 * 119.20680 * 180.02562 * 6 5 3 8 8 C 1.38342 * 118.56993 * 0.02562 * 7 6 5 9 9 C 1.39386 * 119.30443 * 0.02562 * 8 7 6 10 10 N 1.39375 * 119.62723 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00101 * 174.90876 * 10 9 8 12 12 O 1.21578 * 119.99816 * 5.08831 * 11 10 9 13 13 N 1.34769 * 119.99675 * 185.09505 * 11 10 9 14 14 C 1.47426 * 125.65354 * 0.02562 * 13 11 10 15 15 C 1.54905 * 104.83426 * 204.09543 * 14 13 11 16 16 C 1.55163 * 101.58289 * 322.98976 * 15 14 13 17 17 O 1.42896 * 110.72245 * 277.13831 * 16 15 14 18 18 C 1.50702 * 110.72027 * 154.03990 * 16 15 14 19 19 H 1.08004 * 120.00107 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99821 * 180.02562 * 18 16 15 21 21 N 1.31507 * 120.00469 * 0.02562 * 20 18 16 22 22 Si 1.86806 * 119.99746 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46626 * 60.00370 * 22 20 18 24 24 H 1.48495 * 109.47077 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47273 * 300.00322 * 22 20 18 26 26 C 1.47027 * 125.64599 * 179.71357 * 13 11 10 27 27 N 1.32009 * 120.74468 * 359.97384 * 9 8 7 28 28 H 1.09000 * 109.47259 * 300.00598 * 1 2 3 29 29 H 1.09007 * 109.46981 * 60.00286 * 1 2 3 30 30 H 1.08996 * 109.47474 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.39716 * 0.02562 * 6 5 3 32 32 H 1.08002 * 120.71536 * 180.02562 * 7 6 5 33 33 H 1.08004 * 120.34692 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99736 * 354.90618 * 10 9 8 35 35 H 1.09001 * 110.36644 * 322.93844 * 14 13 11 36 36 H 1.09005 * 110.36291 * 85.25983 * 14 13 11 37 37 H 1.08999 * 111.00791 * 81.06407 * 15 14 13 38 38 H 1.09002 * 111.00561 * 204.87801 * 15 14 13 39 39 H 0.96693 * 113.99913 * 179.97438 * 17 16 15 40 40 H 0.96997 * 120.00809 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.88407 * 298.39667 * 26 13 11 42 42 H 1.09006 * 109.88042 * 59.55826 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4021 2.2184 -0.0005 5 6 3.5420 1.2774 0.0006 6 6 4.1672 2.5212 0.0000 7 6 5.5535 2.5821 0.0000 8 6 6.2679 1.3974 0.0000 9 6 5.5792 0.1855 -0.0005 10 7 6.2921 -1.0121 0.0000 11 6 5.6377 -2.1859 0.1031 12 8 4.4221 -2.2062 0.1024 13 7 6.3310 -3.3369 0.2071 14 6 7.8003 -3.4568 0.2215 15 6 8.0852 -4.9001 -0.2634 16 6 6.9175 -5.6848 0.3910 17 8 7.2265 -6.0137 1.7469 18 6 6.6024 -6.9290 -0.3988 19 1 7.1684 -7.1615 -1.2888 20 6 5.5916 -7.7706 0.0148 21 7 4.9021 -7.4874 1.0982 22 14 5.2016 -9.3132 -0.9639 23 1 6.4010 -10.1877 -1.0081 24 1 4.0822 -10.0415 -0.3145 25 1 4.8120 -8.9369 -2.3465 26 6 5.7471 -4.6805 0.3314 27 7 4.2594 0.1594 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.5804 3.4279 -0.0004 32 1 6.0639 3.5340 0.0000 33 1 7.3478 1.4113 -0.0004 34 1 7.2592 -1.0008 -0.0738 35 1 8.2467 -2.7326 -0.4600 36 1 8.1826 -3.3137 1.2322 37 1 8.0377 -4.9637 -1.3505 38 1 9.0486 -5.2530 0.1048 39 1 6.5283 -6.5045 2.2014 40 1 4.1908 -8.0792 1.3890 41 1 5.1544 -4.7442 1.2440 42 1 5.1214 -4.8944 -0.5351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364399239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:51 Heat of formation + Delta-G solvation = -92.964895 kcal Electronic energy + Delta-G solvation = -28872.547881 eV Core-core repulsion = 24626.229792 eV Total energy + Delta-G solvation = -4246.318089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.08749 -40.17874 -39.19803 -37.42800 -36.47716 -34.68651 -34.32854 -32.80335 -32.18198 -30.79404 -29.65845 -27.96032 -27.80177 -25.39929 -24.92527 -23.55679 -22.42132 -21.44766 -19.90819 -19.56725 -18.69635 -17.54689 -17.39116 -17.11728 -16.43484 -16.40335 -16.24782 -15.61332 -15.45840 -15.12995 -14.49618 -14.39614 -14.18104 -13.88290 -13.42621 -13.41371 -13.07015 -12.92438 -12.85570 -12.45303 -12.27324 -12.07159 -11.70271 -11.53377 -11.06707 -10.96896 -10.86753 -10.77615 -10.75660 -10.70765 -10.53733 -10.18441 -10.10147 -10.05553 -9.38198 -9.08708 -8.68330 -8.46403 -8.34967 -7.84157 -6.30766 -4.39700 0.36559 1.11385 2.30300 2.52313 2.66795 3.22139 3.27892 3.29557 3.47194 3.87306 3.93728 4.24438 4.31914 4.55337 4.70645 4.79917 4.95940 5.02061 5.08398 5.16082 5.16277 5.28338 5.50333 5.56846 5.62621 5.74814 5.83673 5.93565 5.99651 6.05966 6.25856 6.44955 6.56714 6.67488 6.81894 6.86176 7.04529 7.26198 7.36924 7.56537 7.71901 7.88700 7.99268 8.35074 8.63086 8.99649 9.29158 9.41201 10.77039 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.003094 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.568426 B = 9048.421813 C =10607.344112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.319 6.319 3 C 0.527 3.473 4 O -0.507 6.507 5 C 0.124 3.876 6 C -0.149 4.149 7 C -0.053 4.053 8 C -0.183 4.183 9 C 0.387 3.613 10 N -0.670 5.670 11 C 0.699 3.301 12 O -0.525 6.525 13 N -0.625 5.625 14 C 0.099 3.901 15 C -0.116 4.116 16 C 0.250 3.750 17 O -0.587 6.587 18 C -0.539 4.539 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.895 5.895 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.121 3.879 27 N -0.426 5.426 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.412 0.588 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.387 0.613 40 H 0.272 0.728 41 H 0.064 0.936 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 17.966 -1.845 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.233 6.233 3 C 0.370 3.630 4 O -0.395 6.395 5 C -0.014 4.014 6 C -0.172 4.172 7 C -0.079 4.079 8 C -0.207 4.207 9 C 0.152 3.848 10 N -0.319 5.319 11 C 0.401 3.599 12 O -0.395 6.395 13 N -0.364 5.364 14 C -0.024 4.024 15 C -0.154 4.154 16 C 0.209 3.791 17 O -0.397 6.397 18 C -0.577 4.577 19 H 0.085 0.915 20 C -0.132 4.132 21 N -0.534 5.534 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.001 4.001 27 N -0.143 5.143 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.239 0.761 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.119 17.546 -1.851 17.679 hybrid contribution -0.028 -0.328 -0.373 0.498 sum 1.091 17.219 -2.224 17.396 Atomic orbital electron populations 1.23358 0.76319 1.04178 1.02179 1.86839 1.22904 1.31043 1.82476 1.20847 0.87934 0.81850 0.72399 1.90821 1.65935 1.36300 1.46450 1.19882 0.90861 0.89322 1.01356 1.21919 0.95368 0.98003 1.01901 1.21303 0.93027 0.98384 0.95157 1.21742 1.01586 0.91372 1.06007 1.18160 0.88000 0.85277 0.93382 1.42951 1.10190 1.03312 1.75453 1.15641 0.85446 0.79250 0.79590 1.91073 1.10234 1.84222 1.54005 1.48051 1.07070 1.06168 1.75072 1.22312 0.81034 0.98874 1.00173 1.22734 1.00178 0.92252 1.00232 1.19475 0.87573 0.90748 0.81296 1.86064 1.48774 1.78394 1.26468 1.21469 1.18082 1.06764 1.11428 0.91514 1.25069 0.94866 0.98259 0.94988 1.69555 1.22212 1.38326 1.23283 0.86441 0.77992 0.82255 0.80116 1.19996 1.21038 1.19992 1.22978 0.98364 0.77045 1.01706 1.67696 1.05629 1.29201 1.11803 0.91900 0.91918 0.87677 0.83379 0.83377 0.83835 0.75086 0.92659 0.91712 0.90489 0.90445 0.76118 0.91773 0.91804 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.32 -5.28 10.38 -40.43 -0.42 -5.70 16 3 C 0.53 8.30 7.95 34.76 0.28 8.58 16 4 O -0.51 -7.94 16.10 -19.22 -0.31 -8.25 16 5 C 0.12 1.86 6.74 -83.04 -0.56 1.30 16 6 C -0.15 -1.63 9.63 -39.03 -0.38 -2.01 16 7 C -0.05 -0.44 10.16 -39.35 -0.40 -0.84 16 8 C -0.18 -1.73 9.94 -39.12 -0.39 -2.12 16 9 C 0.39 5.57 7.42 -154.89 -1.15 4.42 16 10 N -0.67 -9.84 5.34 -15.81 -0.08 -9.92 16 11 C 0.70 13.95 8.45 -86.92 -0.73 13.22 16 12 O -0.52 -12.69 14.93 5.30 0.08 -12.62 16 13 N -0.63 -12.46 3.33 -176.23 -0.59 -13.04 16 14 C 0.10 1.60 6.61 -2.53 -0.02 1.59 16 15 C -0.12 -2.18 6.23 -24.58 -0.15 -2.33 16 16 C 0.25 5.87 0.86 -89.93 -0.08 5.79 16 17 O -0.59 -14.48 13.07 -35.23 -0.46 -14.94 16 18 C -0.54 -13.80 8.12 -34.44 -0.28 -14.08 16 19 H 0.07 1.67 7.76 -52.48 -0.41 1.26 16 20 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 21 N -0.89 -23.56 10.97 55.43 0.61 -22.95 16 22 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.12 2.88 5.54 -3.06 -0.02 2.86 16 27 N -0.43 -7.44 7.64 -8.94 -0.07 -7.51 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.15 1.37 7.63 -52.48 -0.40 0.97 16 32 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.41 4.39 7.15 -40.82 -0.29 4.09 16 35 H 0.06 0.67 7.22 -51.93 -0.38 0.29 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.39 8.03 -51.93 -0.42 0.98 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.39 9.92 6.98 45.56 0.32 10.24 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.06 1.68 8.07 -51.93 -0.42 1.26 16 42 H 0.07 1.71 7.82 -51.93 -0.41 1.31 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -33.61 361.90 -8.20 -41.81 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.49 Total: 12.88 kcal Atomic # 6 Polarization: 22.50 SS G_CDS: -2.90 Total: 19.59 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.13 Total: -53.43 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.11 Total: -41.51 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.61 -8.20 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364399239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.152 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds