Wall clock time and date at job start Tue Mar 31 2020 19:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34676 * 117.00349 * 2 1 4 4 O 1.21439 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.48050 * 120.00281 * 179.97438 * 3 2 1 6 6 C 1.39211 * 119.68886 * 179.97438 * 5 3 2 7 7 C 1.38763 * 119.20680 * 180.02562 * 6 5 3 8 8 C 1.38342 * 118.56993 * 0.02562 * 7 6 5 9 9 C 1.39386 * 119.30443 * 0.02562 * 8 7 6 10 10 N 1.39375 * 119.62723 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00101 * 174.90876 * 10 9 8 12 12 O 1.21578 * 119.99816 * 5.08831 * 11 10 9 13 13 N 1.34769 * 119.99675 * 185.09505 * 11 10 9 14 14 C 1.47426 * 125.65354 * 0.02562 * 13 11 10 15 15 C 1.54905 * 104.83426 * 204.09543 * 14 13 11 16 16 C 1.55163 * 101.58289 * 322.98976 * 15 14 13 17 17 O 1.42896 * 110.72245 * 277.13831 * 16 15 14 18 18 C 1.50702 * 110.72027 * 154.03990 * 16 15 14 19 19 H 1.08004 * 120.00107 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99821 * 180.02562 * 18 16 15 21 21 N 1.31507 * 120.00469 * 0.02562 * 20 18 16 22 22 Si 1.86806 * 119.99746 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46626 * 60.00370 * 22 20 18 24 24 H 1.48495 * 109.47077 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47273 * 300.00322 * 22 20 18 26 26 C 1.47027 * 125.64599 * 179.71357 * 13 11 10 27 27 N 1.32009 * 120.74468 * 359.97384 * 9 8 7 28 28 H 1.09000 * 109.47259 * 300.00598 * 1 2 3 29 29 H 1.09007 * 109.46981 * 60.00286 * 1 2 3 30 30 H 1.08996 * 109.47474 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.39716 * 0.02562 * 6 5 3 32 32 H 1.08002 * 120.71536 * 180.02562 * 7 6 5 33 33 H 1.08004 * 120.34692 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99736 * 354.90618 * 10 9 8 35 35 H 1.09001 * 110.36644 * 322.93844 * 14 13 11 36 36 H 1.09005 * 110.36291 * 85.25983 * 14 13 11 37 37 H 1.08999 * 111.00791 * 81.06407 * 15 14 13 38 38 H 1.09002 * 111.00561 * 204.87801 * 15 14 13 39 39 H 0.96693 * 113.99913 * 179.97438 * 17 16 15 40 40 H 0.96997 * 120.00809 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.88407 * 298.39667 * 26 13 11 42 42 H 1.09006 * 109.88042 * 59.55826 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4021 2.2184 -0.0005 5 6 3.5420 1.2774 0.0006 6 6 4.1672 2.5212 0.0000 7 6 5.5535 2.5821 0.0000 8 6 6.2679 1.3974 0.0000 9 6 5.5792 0.1855 -0.0005 10 7 6.2921 -1.0121 0.0000 11 6 5.6377 -2.1859 0.1031 12 8 4.4221 -2.2062 0.1024 13 7 6.3310 -3.3369 0.2071 14 6 7.8003 -3.4568 0.2215 15 6 8.0852 -4.9001 -0.2634 16 6 6.9175 -5.6848 0.3910 17 8 7.2265 -6.0137 1.7469 18 6 6.6024 -6.9290 -0.3988 19 1 7.1684 -7.1615 -1.2888 20 6 5.5916 -7.7706 0.0148 21 7 4.9021 -7.4874 1.0982 22 14 5.2016 -9.3132 -0.9639 23 1 6.4010 -10.1877 -1.0081 24 1 4.0822 -10.0415 -0.3145 25 1 4.8120 -8.9369 -2.3465 26 6 5.7471 -4.6805 0.3314 27 7 4.2594 0.1594 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.5804 3.4279 -0.0004 32 1 6.0639 3.5340 0.0000 33 1 7.3478 1.4113 -0.0004 34 1 7.2592 -1.0008 -0.0738 35 1 8.2467 -2.7326 -0.4600 36 1 8.1826 -3.3137 1.2322 37 1 8.0377 -4.9637 -1.3505 38 1 9.0486 -5.2530 0.1048 39 1 6.5283 -6.5045 2.2014 40 1 4.1908 -8.0792 1.3890 41 1 5.1544 -4.7442 1.2440 42 1 5.1214 -4.8944 -0.5351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364399239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:50 Heat of formation + Delta-G solvation = -118.084846 kcal Electronic energy + Delta-G solvation = -28873.637163 eV Core-core repulsion = 24626.229792 eV Total energy + Delta-G solvation = -4247.407372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17067 -41.44940 -40.48495 -39.02781 -37.64512 -36.11084 -35.94449 -34.16383 -33.68069 -32.13328 -31.00629 -29.57098 -28.88673 -27.13177 -25.97508 -24.84127 -23.70707 -22.53547 -21.45615 -21.10602 -19.86293 -19.15527 -18.69912 -18.61659 -17.61354 -17.55325 -17.16610 -17.00342 -16.88317 -16.53543 -16.09889 -15.93522 -15.50708 -14.90045 -14.78734 -14.74138 -14.67058 -14.21654 -14.13396 -13.82983 -13.48198 -13.32459 -13.20735 -13.04589 -12.82788 -12.52985 -12.33225 -12.29540 -12.14054 -12.06354 -11.93874 -11.87784 -11.45387 -11.18975 -10.95527 -10.63485 -10.35938 -10.21010 -9.71626 -9.27577 -8.26704 -6.42678 -0.56795 0.25384 1.24413 1.34260 1.43761 1.44090 1.51723 1.59168 2.11075 2.37594 2.69855 2.84561 3.00043 3.20535 3.74476 3.81510 3.88794 4.00771 4.10426 4.14358 4.17236 4.20605 4.24116 4.39641 4.41782 4.59323 4.60930 4.71636 4.86888 5.03218 5.04276 5.14493 5.18141 5.20148 5.23637 5.37660 5.48343 5.67081 5.75656 5.82056 6.05495 6.41298 6.63757 6.74871 7.08777 7.29536 7.38642 7.55354 8.79213 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.003094 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.568426 B = 9048.421813 C =10607.344112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.520 3.480 4 O -0.517 6.517 5 C 0.082 3.918 6 C -0.131 4.131 7 C -0.038 4.038 8 C -0.149 4.149 9 C 0.351 3.649 10 N -0.651 5.651 11 C 0.698 3.302 12 O -0.580 6.580 13 N -0.630 5.630 14 C 0.103 3.897 15 C -0.111 4.111 16 C 0.234 3.766 17 O -0.589 6.589 18 C -0.558 4.558 19 H 0.070 0.930 20 C 0.025 3.975 21 N -0.918 5.918 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.141 3.859 27 N -0.483 5.483 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.165 0.835 32 H 0.204 0.796 33 H 0.194 0.806 34 H 0.433 0.567 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.023 0.977 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 20.721 -2.690 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.365 3.635 4 O -0.407 6.407 5 C -0.054 4.054 6 C -0.153 4.153 7 C -0.063 4.063 8 C -0.172 4.172 9 C 0.116 3.884 10 N -0.303 5.303 11 C 0.399 3.601 12 O -0.455 6.455 13 N -0.368 5.368 14 C -0.018 4.018 15 C -0.148 4.148 16 C 0.193 3.807 17 O -0.398 6.398 18 C -0.596 4.596 19 H 0.088 0.912 20 C -0.176 4.176 21 N -0.557 5.557 22 Si 0.788 3.212 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.017 3.983 27 N -0.200 5.200 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.183 0.817 32 H 0.221 0.779 33 H 0.211 0.789 34 H 0.274 0.726 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.338 20.371 -2.706 21.003 hybrid contribution -1.018 -1.061 -0.107 1.474 sum 3.320 19.310 -2.813 19.794 Atomic orbital electron populations 1.23604 0.74504 1.05371 1.03171 1.86819 1.25133 1.32165 1.82633 1.21261 0.88843 0.81457 0.71969 1.90778 1.66373 1.36161 1.47365 1.20002 0.90204 0.90440 1.04754 1.22292 0.97082 0.96778 0.99158 1.21963 0.91597 1.00201 0.92536 1.22256 1.03842 0.89241 1.01870 1.18632 0.87661 0.86385 0.95758 1.42511 1.10959 1.01801 1.75076 1.15858 0.84942 0.80368 0.78937 1.91039 1.12893 1.85322 1.56211 1.47948 1.08666 1.04892 1.75284 1.22515 0.78568 0.98582 1.02141 1.22730 0.98752 0.93033 1.00318 1.19709 0.89662 0.90543 0.80751 1.86050 1.48352 1.78232 1.27169 1.21855 1.18203 1.07775 1.11803 0.91228 1.25824 0.94851 1.01016 0.95861 1.69672 1.22500 1.39112 1.24465 0.85525 0.77881 0.79104 0.78651 1.19062 1.21074 1.19899 1.22410 0.97968 0.79989 0.97962 1.67387 1.07883 1.31314 1.13447 0.90965 0.90830 0.86499 0.81709 0.77886 0.78911 0.72581 0.87251 0.90700 0.89750 0.88909 0.77152 0.91991 0.95800 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.35 -12.59 10.38 -55.85 -0.58 -13.17 16 3 C 0.52 17.18 7.95 70.43 0.56 17.74 16 4 O -0.52 -16.56 16.10 20.03 0.32 -16.23 16 5 C 0.08 2.48 6.74 41.83 0.28 2.76 16 6 C -0.13 -2.50 9.63 22.63 0.22 -2.28 16 7 C -0.04 -0.42 10.16 22.42 0.23 -0.19 16 8 C -0.15 -2.05 9.94 22.57 0.22 -1.83 16 9 C 0.35 9.43 7.42 133.11 0.99 10.42 16 10 N -0.65 -17.93 5.34 -322.18 -1.72 -19.65 16 11 C 0.70 28.23 8.45 179.06 1.51 29.74 16 12 O -0.58 -29.77 14.93 -3.96 -0.06 -29.83 16 13 N -0.63 -25.22 3.33 -829.73 -2.76 -27.98 16 14 C 0.10 3.07 6.61 86.85 0.57 3.64 16 15 C -0.11 -3.96 6.23 31.99 0.20 -3.76 16 16 C 0.23 11.18 0.86 -10.34 -0.01 11.17 16 17 O -0.59 -29.69 13.07 -148.98 -1.95 -31.63 16 18 C -0.56 -29.08 8.12 25.60 0.21 -28.88 16 19 H 0.07 3.49 7.76 -2.91 -0.02 3.47 16 20 C 0.03 1.32 5.28 84.66 0.45 1.77 16 21 N -0.92 -50.44 10.97 21.45 0.24 -50.21 16 22 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.14 7.04 5.54 86.73 0.48 7.52 16 27 N -0.48 -17.16 7.64 -182.21 -1.39 -18.55 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.17 2.54 7.63 -2.91 -0.02 2.52 16 32 H 0.20 0.13 8.06 -2.91 -0.02 0.11 16 33 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.43 7.48 7.15 -92.71 -0.66 6.81 16 35 H 0.11 2.10 7.22 -2.39 -0.02 2.08 16 36 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.38 20.26 6.98 -74.06 -0.52 19.74 16 40 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.02 1.34 8.07 -2.39 -0.02 1.33 16 42 H 0.03 1.63 7.82 -2.38 -0.02 1.61 16 Total: -1.00 -82.22 361.90 1.14 -81.08 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.09 Total: 32.31 kcal Atomic # 6 Polarization: 42.57 SS G_CDS: 7.11 Total: 49.68 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.64 Total: -116.39 kcal Atomic # 8 Polarization: -88.60 SS G_CDS: -2.26 Total: -90.86 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -82.22 1.14 -81.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364399239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.009 kcal (2) G-P(sol) polarization free energy of solvation -82.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds