Wall clock time and date at job start Tue Mar 31 2020 19:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99947 * 2 1 4 4 O 1.20826 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00066 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.51496 * 305.00105 * 5 3 2 7 7 C 1.53298 * 109.51029 * 65.10132 * 5 3 2 8 8 N 1.47153 * 108.38299 * 172.27851 * 7 5 3 9 9 C 1.34774 * 120.98728 * 129.48756 * 8 7 5 10 10 O 1.21577 * 119.99573 * 354.66870 * 9 8 7 11 11 N 1.34778 * 120.00366 * 174.66924 * 9 8 7 12 12 C 1.39245 * 119.99694 * 185.27074 * 11 9 8 13 13 C 1.39689 * 119.57308 * 185.41830 * 12 11 9 14 14 C 1.38641 * 119.49498 * 179.70094 * 13 12 11 15 15 C 1.38358 * 118.67207 * 0.56024 * 14 13 12 16 16 C 1.40576 * 119.12984 * 359.72121 * 15 14 13 17 17 C 1.41329 * 119.78546 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.40026 * 119.99534 * 179.97438 * 17 16 15 20 20 N 1.30738 * 120.00339 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99726 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47187 * 90.00042 * 21 19 17 23 23 H 1.48504 * 109.46983 * 209.99686 * 21 19 17 24 24 H 1.48497 * 109.46836 * 329.99799 * 21 19 17 25 25 N 1.31904 * 119.58058 * 5.68682 * 12 11 9 26 26 C 1.47163 * 118.03532 * 309.46498 * 8 7 5 27 27 C 1.53291 * 108.38142 * 50.53501 * 26 8 7 28 28 O 1.42962 * 109.51461 * 184.90078 * 5 3 2 29 29 H 1.09002 * 109.46842 * 299.99728 * 1 2 3 30 30 H 1.08995 * 109.47386 * 59.99752 * 1 2 3 31 31 H 1.09002 * 109.46806 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.68466 * 291.99832 * 7 5 3 33 33 H 1.08997 * 109.68544 * 52.55764 * 7 5 3 34 34 H 0.96999 * 120.00031 * 5.26543 * 11 9 8 35 35 H 1.07997 * 120.24831 * 359.97438 * 13 12 11 36 36 H 1.07998 * 120.66698 * 180.26204 * 14 13 12 37 37 H 1.07994 * 120.43563 * 179.75511 * 15 14 13 38 38 H 0.96999 * 119.99911 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.68174 * 170.25786 * 26 8 7 40 40 H 1.09000 * 109.67739 * 290.77284 * 26 8 7 41 41 H 1.09004 * 109.51505 * 67.62842 * 27 26 8 42 42 H 1.09004 * 109.51065 * 187.72236 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9611 0.7053 0.8408 7 6 4.1089 0.6945 -1.3116 8 7 5.5568 0.9512 -1.3687 9 6 6.4273 -0.0412 -1.6401 10 8 6.0306 -1.1855 -1.7464 11 7 7.7375 0.2349 -1.7938 12 6 8.6198 -0.7700 -2.1819 13 6 9.9904 -0.5039 -2.2286 14 6 10.8680 -1.5074 -2.6093 15 6 10.3535 -2.7472 -2.9448 16 6 8.9639 -2.9508 -2.8837 17 6 8.4235 -4.2118 -3.2229 18 1 9.0775 -5.0151 -3.5283 19 6 7.0400 -4.4196 -3.1630 20 7 6.2483 -3.4473 -2.7928 21 14 6.3258 -6.0867 -3.6107 22 1 6.2557 -6.9377 -2.3957 23 1 4.9612 -5.9069 -4.1684 24 1 7.1925 -6.7406 -4.6238 25 7 8.1504 -1.9593 -2.5060 26 6 6.0261 2.3239 -1.1211 27 6 5.3900 2.8248 0.1806 28 8 3.9730 2.6406 0.1146 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9252 -0.3794 -1.3415 33 1 3.6173 1.1752 -2.1573 34 1 8.0658 1.1336 -1.6341 35 1 10.3638 0.4748 -1.9658 36 1 11.9315 -1.3237 -2.6478 37 1 11.0108 -3.5481 -3.2492 38 1 5.2899 -3.5912 -2.7517 39 1 7.1118 2.3288 -1.0248 40 1 5.7280 2.9685 -1.9479 41 1 5.7915 2.2609 1.0226 42 1 5.6143 3.8835 0.3115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365076163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:20 Heat of formation + Delta-G solvation = -68.606044 kcal Electronic energy + Delta-G solvation = -29417.433227 eV Core-core repulsion = 25172.171417 eV Total energy + Delta-G solvation = -4245.261810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94897 -39.99083 -38.70006 -37.52126 -36.54695 -34.43662 -34.25585 -33.11874 -32.01197 -30.31683 -29.17377 -28.55474 -27.24929 -25.61448 -24.84793 -23.06963 -21.78251 -21.25867 -20.90666 -19.19821 -18.42147 -17.91641 -17.32062 -16.98865 -16.68995 -16.37066 -16.00807 -15.38363 -15.13402 -14.85606 -14.55573 -14.53769 -14.40056 -13.80429 -13.49501 -13.41517 -13.33811 -13.02643 -12.80705 -12.34081 -12.14178 -12.04080 -11.93520 -11.73812 -11.16933 -11.11465 -10.99921 -10.95647 -10.66149 -10.49647 -10.46648 -10.36155 -9.93585 -9.72981 -9.21912 -9.05163 -8.34219 -7.97484 -7.27813 -6.97687 -6.13623 -4.40321 1.92082 2.11202 2.80452 2.84014 3.10299 3.17486 3.19730 3.26795 3.75745 4.01884 4.06695 4.19423 4.45961 4.53360 4.71384 4.83089 4.90728 4.92355 4.96371 4.99097 5.02728 5.32137 5.38419 5.48470 5.64811 5.78810 6.03392 6.06146 6.10007 6.35042 6.48252 6.67313 6.70745 6.74596 6.83607 7.15245 7.27108 7.53815 7.58717 7.66023 7.79744 8.12822 8.23533 8.52590 8.76721 9.04359 9.42424 10.23972 10.48122 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003939 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.797752 B = 7107.267247 C = 9414.519589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.474 3.526 4 O -0.487 6.487 5 C 0.088 3.912 6 H 0.104 0.896 7 C 0.118 3.882 8 N -0.643 5.643 9 C 0.674 3.326 10 O -0.455 6.455 11 N -0.671 5.671 12 C 0.385 3.615 13 C -0.357 4.357 14 C -0.035 4.035 15 C -0.305 4.305 16 C 0.272 3.728 17 C -0.424 4.424 18 H 0.082 0.918 19 C 0.058 3.942 20 N -0.652 5.652 21 Si 0.895 3.105 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 N -0.473 5.473 26 C 0.075 3.925 27 C 0.051 3.949 28 O -0.358 6.358 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.394 0.606 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.272 0.728 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 10.365 5.761 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.266 6.266 3 C 0.314 3.686 4 O -0.373 6.373 5 C 0.027 3.973 6 H 0.121 0.879 7 C -0.007 4.007 8 N -0.387 5.387 9 C 0.374 3.626 10 O -0.319 6.319 11 N -0.321 5.321 12 C 0.146 3.854 13 C -0.383 4.383 14 C -0.060 4.060 15 C -0.328 4.328 16 C 0.147 3.853 17 C -0.455 4.455 18 H 0.100 0.900 19 C -0.172 4.172 20 N -0.271 5.271 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.191 5.191 26 C -0.049 4.049 27 C -0.026 4.026 28 O -0.277 6.277 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.148 9.761 5.722 14.550 hybrid contribution 0.834 0.068 -0.098 0.842 sum -8.315 9.829 5.625 14.049 Atomic orbital electron populations 1.23326 0.75644 1.04074 1.02604 1.86529 1.23790 1.32331 1.83972 1.22962 0.90737 0.81800 0.73064 1.90681 1.66605 1.36285 1.43728 1.21803 0.88064 0.86054 1.01341 0.87866 1.21753 0.80402 1.04150 0.94367 1.47496 1.05544 1.07856 1.77782 1.16241 0.81230 0.84861 0.80260 1.91365 1.75302 1.15641 1.49544 1.42689 1.06057 1.12009 1.71345 1.18319 0.85201 0.88946 0.92935 1.20412 0.92056 1.00238 1.25628 1.20546 0.96874 0.93068 0.95477 1.21630 0.96684 0.97482 1.17051 1.18363 0.87107 0.91769 0.88065 1.19584 0.92133 0.95898 1.37857 0.89955 1.26171 0.97838 0.97796 0.95369 1.70317 1.04329 1.29321 1.23088 0.86526 0.78843 0.83137 0.79501 1.19656 1.20331 1.18793 1.68626 1.35265 0.97301 1.17956 1.22277 0.99792 0.84637 0.98204 1.23111 0.80067 1.02536 0.96886 1.88010 1.22692 1.22367 1.94601 0.91819 0.91671 0.87651 0.86218 0.90970 0.77028 0.89183 0.88577 0.88542 0.91627 0.89316 0.90645 0.92015 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.22 10.56 -39.26 -0.41 -4.63 16 3 C 0.47 6.31 7.29 36.01 0.26 6.57 16 4 O -0.49 -7.60 16.26 -25.46 -0.41 -8.01 16 5 C 0.09 1.11 3.30 -27.73 -0.09 1.02 16 6 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 7 C 0.12 1.67 5.92 -3.53 -0.02 1.65 16 8 N -0.64 -9.65 3.02 -178.00 -0.54 -10.18 16 9 C 0.67 13.51 8.26 -86.92 -0.72 12.79 16 10 O -0.46 -11.28 11.72 5.30 0.06 -11.22 16 11 N -0.67 -12.99 5.29 -15.78 -0.08 -13.08 16 12 C 0.39 9.26 7.41 -154.99 -1.15 8.11 16 13 C -0.36 -7.86 9.95 -38.89 -0.39 -8.25 16 14 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 15 C -0.31 -7.61 9.83 -38.66 -0.38 -7.99 16 16 C 0.27 7.57 6.55 -85.00 -0.56 7.02 16 17 C -0.42 -11.58 9.14 -37.74 -0.34 -11.92 16 18 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 19 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 20 N -0.65 -17.85 9.09 55.55 0.50 -17.35 16 21 Si 0.90 19.09 29.56 -169.99 -5.02 14.07 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 25 N -0.47 -13.15 5.74 -10.26 -0.06 -13.21 16 26 C 0.08 0.80 6.57 -3.53 -0.02 0.78 16 27 C 0.05 0.49 6.98 37.31 0.26 0.75 16 28 O -0.36 -4.53 9.93 -55.11 -0.55 -5.08 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.12 1.91 7.06 -51.93 -0.37 1.54 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.39 5.85 6.25 -40.82 -0.26 5.60 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 39 H 0.09 0.80 5.78 -51.93 -0.30 0.50 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -35.21 354.43 -8.87 -44.08 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.12 Total: 7.14 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -2.58 Total: 12.12 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.18 Total: -53.81 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.31 Total: -28.94 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.21 -8.87 -44.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365076163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.526 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds