Wall clock time and date at job start Tue Mar 31 2020 19:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99947 * 2 1 4 4 O 1.20826 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00066 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.51496 * 305.00105 * 5 3 2 7 7 C 1.53298 * 109.51029 * 65.10132 * 5 3 2 8 8 N 1.47153 * 108.38299 * 172.27851 * 7 5 3 9 9 C 1.34774 * 120.98728 * 129.48756 * 8 7 5 10 10 O 1.21577 * 119.99573 * 354.66870 * 9 8 7 11 11 N 1.34778 * 120.00366 * 174.66924 * 9 8 7 12 12 C 1.39245 * 119.99694 * 185.27074 * 11 9 8 13 13 C 1.39689 * 119.57308 * 185.41830 * 12 11 9 14 14 C 1.38641 * 119.49498 * 179.70094 * 13 12 11 15 15 C 1.38358 * 118.67207 * 0.56024 * 14 13 12 16 16 C 1.40576 * 119.12984 * 359.72121 * 15 14 13 17 17 C 1.41329 * 119.78546 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.40026 * 119.99534 * 179.97438 * 17 16 15 20 20 N 1.30738 * 120.00339 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99726 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47187 * 90.00042 * 21 19 17 23 23 H 1.48504 * 109.46983 * 209.99686 * 21 19 17 24 24 H 1.48497 * 109.46836 * 329.99799 * 21 19 17 25 25 N 1.31904 * 119.58058 * 5.68682 * 12 11 9 26 26 C 1.47163 * 118.03532 * 309.46498 * 8 7 5 27 27 C 1.53291 * 108.38142 * 50.53501 * 26 8 7 28 28 O 1.42962 * 109.51461 * 184.90078 * 5 3 2 29 29 H 1.09002 * 109.46842 * 299.99728 * 1 2 3 30 30 H 1.08995 * 109.47386 * 59.99752 * 1 2 3 31 31 H 1.09002 * 109.46806 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.68466 * 291.99832 * 7 5 3 33 33 H 1.08997 * 109.68544 * 52.55764 * 7 5 3 34 34 H 0.96999 * 120.00031 * 5.26543 * 11 9 8 35 35 H 1.07997 * 120.24831 * 359.97438 * 13 12 11 36 36 H 1.07998 * 120.66698 * 180.26204 * 14 13 12 37 37 H 1.07994 * 120.43563 * 179.75511 * 15 14 13 38 38 H 0.96999 * 119.99911 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.68174 * 170.25786 * 26 8 7 40 40 H 1.09000 * 109.67739 * 290.77284 * 26 8 7 41 41 H 1.09004 * 109.51505 * 67.62842 * 27 26 8 42 42 H 1.09004 * 109.51065 * 187.72236 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9611 0.7053 0.8408 7 6 4.1089 0.6945 -1.3116 8 7 5.5568 0.9512 -1.3687 9 6 6.4273 -0.0412 -1.6401 10 8 6.0306 -1.1855 -1.7464 11 7 7.7375 0.2349 -1.7938 12 6 8.6198 -0.7700 -2.1819 13 6 9.9904 -0.5039 -2.2286 14 6 10.8680 -1.5074 -2.6093 15 6 10.3535 -2.7472 -2.9448 16 6 8.9639 -2.9508 -2.8837 17 6 8.4235 -4.2118 -3.2229 18 1 9.0775 -5.0151 -3.5283 19 6 7.0400 -4.4196 -3.1630 20 7 6.2483 -3.4473 -2.7928 21 14 6.3258 -6.0867 -3.6107 22 1 6.2557 -6.9377 -2.3957 23 1 4.9612 -5.9069 -4.1684 24 1 7.1925 -6.7406 -4.6238 25 7 8.1504 -1.9593 -2.5060 26 6 6.0261 2.3239 -1.1211 27 6 5.3900 2.8248 0.1806 28 8 3.9730 2.6406 0.1146 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9252 -0.3794 -1.3415 33 1 3.6173 1.1752 -2.1573 34 1 8.0658 1.1336 -1.6341 35 1 10.3638 0.4748 -1.9658 36 1 11.9315 -1.3237 -2.6478 37 1 11.0108 -3.5481 -3.2492 38 1 5.2899 -3.5912 -2.7517 39 1 7.1118 2.3288 -1.0248 40 1 5.7280 2.9685 -1.9479 41 1 5.7915 2.2609 1.0226 42 1 5.6143 3.8835 0.3115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365076163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:19 Heat of formation + Delta-G solvation = -91.303789 kcal Electronic energy + Delta-G solvation = -29418.417475 eV Core-core repulsion = 25172.171417 eV Total energy + Delta-G solvation = -4246.246058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03049 -41.31277 -40.09171 -39.05765 -37.58823 -36.01512 -35.66920 -34.88878 -33.07359 -32.18602 -30.90428 -29.51960 -28.28746 -27.38621 -25.99195 -24.26767 -23.37408 -22.95321 -22.00935 -20.64353 -19.92609 -19.09898 -18.69466 -18.10903 -18.03139 -17.64763 -17.05744 -16.59381 -16.49551 -16.27221 -16.17909 -15.89442 -15.61394 -15.40304 -14.87982 -14.75650 -14.61014 -14.30849 -13.97923 -13.83303 -13.66106 -13.22934 -13.02181 -12.87685 -12.72099 -12.69902 -12.53091 -12.28435 -12.02562 -11.89431 -11.74455 -11.61581 -11.51625 -11.31574 -10.86603 -10.84082 -9.87585 -9.57743 -9.13456 -8.77432 -8.01364 -6.38616 0.85338 0.97794 1.21169 1.29995 1.41723 1.52952 1.53548 1.56113 2.28779 2.46340 2.85083 2.91262 3.04349 3.42510 3.57973 3.72683 3.91731 4.07857 4.09597 4.21036 4.24972 4.30257 4.37041 4.39845 4.57590 4.66385 4.67766 4.76905 4.85293 4.86613 4.99307 5.07195 5.16010 5.29789 5.41737 5.65730 5.78465 5.81735 5.91754 5.97751 6.25470 6.41442 6.53406 6.83355 7.02300 7.11820 7.88936 8.38585 8.59974 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003939 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.797752 B = 7107.267247 C = 9414.519589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.478 3.522 4 O -0.512 6.512 5 C 0.097 3.903 6 H 0.111 0.889 7 C 0.121 3.879 8 N -0.635 5.635 9 C 0.669 3.331 10 O -0.509 6.509 11 N -0.658 5.658 12 C 0.365 3.635 13 C -0.343 4.343 14 C -0.033 4.033 15 C -0.330 4.330 16 C 0.239 3.761 17 C -0.467 4.467 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.686 5.686 21 Si 0.972 3.028 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.257 1.257 25 N -0.508 5.508 26 C 0.070 3.930 27 C 0.051 3.949 28 O -0.371 6.371 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.270 0.730 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 12.058 6.330 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.400 6.400 5 C 0.037 3.963 6 H 0.128 0.872 7 C -0.004 4.004 8 N -0.378 5.378 9 C 0.369 3.631 10 O -0.376 6.376 11 N -0.310 5.310 12 C 0.125 3.875 13 C -0.369 4.369 14 C -0.058 4.058 15 C -0.353 4.353 16 C 0.113 3.887 17 C -0.497 4.497 18 H 0.103 0.897 19 C -0.213 4.213 20 N -0.305 5.305 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.181 1.181 25 N -0.227 5.227 26 C -0.053 4.053 27 C -0.026 4.026 28 O -0.290 6.290 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.256 0.744 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.477 11.540 6.313 15.649 hybrid contribution 0.707 -0.260 -0.224 0.786 sum -7.770 11.280 6.089 14.990 Atomic orbital electron populations 1.23651 0.73750 1.06003 1.03036 1.86528 1.25751 1.31739 1.83462 1.23048 0.90925 0.81735 0.72299 1.90662 1.67158 1.37064 1.45128 1.21661 0.87778 0.86455 1.00434 0.87200 1.21692 0.80095 1.02941 0.95629 1.47372 1.05144 1.08758 1.76510 1.16457 0.81679 0.85107 0.79862 1.91352 1.76235 1.18284 1.51708 1.42494 1.05595 1.12198 1.70750 1.18811 0.86973 0.88953 0.92764 1.20902 0.91098 1.01927 1.22961 1.21029 0.99128 0.91907 0.93694 1.21810 0.95877 0.99249 1.18401 1.18833 0.88658 0.92415 0.88753 1.19890 0.93231 0.96483 1.40136 0.89740 1.26988 0.97752 1.01681 0.94893 1.70513 1.04170 1.31386 1.24456 0.85372 0.77956 0.78102 0.79253 1.19206 1.19798 1.18052 1.68586 1.36494 0.98688 1.18971 1.22625 1.01136 0.81969 0.99531 1.23370 0.78337 1.04726 0.96118 1.88016 1.24606 1.21809 1.94520 0.91157 0.91511 0.85050 0.88600 0.90541 0.74435 0.84874 0.84444 0.87841 0.91968 0.87338 0.89310 0.91488 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.61 10.56 -51.44 -0.54 -9.16 16 3 C 0.48 12.62 7.29 71.24 0.52 13.14 16 4 O -0.51 -15.75 16.26 28.37 0.46 -15.29 16 5 C 0.10 2.40 3.30 29.95 0.10 2.50 16 6 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 7 C 0.12 3.45 5.92 86.35 0.51 3.96 16 8 N -0.64 -18.57 3.02 -835.35 -2.52 -21.09 16 9 C 0.67 26.93 8.26 179.05 1.48 28.41 16 10 O -0.51 -26.23 11.72 -3.96 -0.05 -26.28 16 11 N -0.66 -24.71 5.29 -322.12 -1.71 -26.42 16 12 C 0.36 17.31 7.41 133.26 0.99 18.30 16 13 C -0.34 -14.18 9.95 22.72 0.23 -13.95 16 14 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 15 C -0.33 -16.53 9.83 22.87 0.22 -16.31 16 16 C 0.24 13.73 6.55 40.19 0.26 13.99 16 17 C -0.47 -26.55 9.14 23.46 0.21 -26.33 16 18 H 0.08 4.51 7.85 -2.92 -0.02 4.49 16 19 C 0.01 0.68 5.50 85.29 0.47 1.15 16 20 N -0.69 -39.38 9.09 21.84 0.20 -39.18 16 21 Si 0.97 40.65 29.56 68.60 2.03 42.68 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 25 N -0.51 -28.99 5.74 -186.37 -1.07 -30.06 16 26 C 0.07 1.29 6.57 86.35 0.57 1.86 16 27 C 0.05 0.81 6.98 72.08 0.50 1.31 16 28 O -0.37 -8.67 9.93 -129.98 -1.29 -9.96 16 29 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 3.23 7.06 -2.39 -0.02 3.21 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.42 11.17 6.25 -92.71 -0.58 10.59 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 38 H 0.27 14.58 8.29 -92.71 -0.77 13.81 16 39 H 0.11 1.56 5.78 -2.39 -0.01 1.54 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -80.52 354.43 3.49 -77.03 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.49 Total: 29.23 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 7.49 Total: 28.49 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.10 Total: -116.75 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -1.42 Total: -60.68 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -80.52 3.49 -77.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365076163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.279 kcal (2) G-P(sol) polarization free energy of solvation -80.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds