Wall clock time and date at job start Tue Mar 31 2020 19:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34675 * 116.99635 * 2 1 4 4 O 1.21422 * 120.00112 * 359.97438 * 3 2 1 5 5 C 1.48061 * 119.99510 * 180.02562 * 3 2 1 6 6 C 1.40019 * 120.89420 * 359.97128 * 5 3 2 7 7 C 1.37992 * 119.15147 * 180.02562 * 6 5 3 8 8 N 1.31886 * 120.99511 * 359.74373 * 7 6 5 9 9 C 1.32263 * 121.97308 * 0.52465 * 8 7 6 10 10 N 1.39411 * 119.63849 * 179.75230 * 9 8 7 11 11 C 1.34782 * 119.99581 * 4.82134 * 10 9 8 12 12 O 1.21580 * 120.00002 * 355.18539 * 11 10 9 13 13 N 1.34779 * 119.99738 * 175.18111 * 11 10 9 14 14 C 1.47419 * 125.64774 * 359.69087 * 13 11 10 15 15 C 1.55137 * 104.72113 * 155.81771 * 14 13 11 16 16 C 1.55159 * 101.48348 * 37.29653 * 15 14 13 17 17 O 1.42903 * 110.72087 * 82.69448 * 16 15 14 18 18 C 1.50698 * 110.87472 * 205.89877 * 16 15 14 19 19 H 1.08001 * 119.99868 * 355.06380 * 18 16 15 20 20 C 1.37877 * 119.99877 * 175.06513 * 18 16 15 21 21 N 1.31509 * 120.00212 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99721 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.47232 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47221 * 119.99863 * 22 20 18 25 25 H 1.48495 * 109.47354 * 240.00210 * 22 20 18 26 26 C 1.47017 * 125.64501 * 180.02562 * 13 11 10 27 27 C 1.39028 * 120.73314 * 359.47905 * 9 8 7 28 28 H 1.08999 * 109.47093 * 300.00231 * 1 2 3 29 29 H 1.08994 * 109.47253 * 60.00289 * 1 2 3 30 30 H 1.08995 * 109.46802 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.42478 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.50028 * 180.02562 * 7 6 5 33 33 H 0.97000 * 120.00670 * 185.10069 * 10 9 8 34 34 H 1.09000 * 110.37120 * 274.74632 * 14 13 11 35 35 H 1.08999 * 110.36824 * 37.07615 * 14 13 11 36 36 H 1.09001 * 111.19338 * 279.19563 * 15 14 13 37 37 H 1.08998 * 110.90778 * 155.26999 * 15 14 13 38 38 H 0.96695 * 114.00039 * 185.02417 * 17 16 15 39 39 H 0.97005 * 119.99992 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.88285 * 300.43894 * 26 13 11 41 41 H 1.09004 * 109.88559 * 61.45416 * 26 13 11 42 42 H 1.08001 * 120.53883 * 180.22544 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5420 1.2775 -0.0006 6 6 4.3228 0.1152 -0.0005 7 6 5.6980 0.2293 -0.0005 8 7 6.2814 1.4121 -0.0056 9 6 5.5850 2.5365 -0.0007 10 7 6.2521 3.7606 -0.0012 11 6 7.5955 3.7958 -0.1049 12 8 8.2322 2.7601 -0.1097 13 7 8.2329 4.9793 -0.2033 14 6 7.5872 6.3045 -0.2165 15 6 8.6848 7.2828 0.2783 16 6 9.9545 6.6808 -0.3796 17 8 10.0795 7.1208 -1.7335 18 6 11.1880 7.0353 0.4102 19 1 11.1136 7.6998 1.2584 20 6 12.4115 6.5115 0.0500 21 7 12.5019 5.7021 -0.9825 22 14 13.9405 6.9516 1.0287 23 1 13.5727 7.8724 2.1343 24 1 14.5397 5.7156 1.5932 25 1 14.9247 7.6162 0.1371 26 6 9.6868 5.1620 -0.3221 27 6 4.1949 2.5113 -0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.8547 -0.8581 -0.0005 32 1 6.3057 -0.6635 -0.0009 33 1 5.7499 4.5868 0.0770 34 1 7.2729 6.5633 -1.2277 35 1 6.7342 6.3176 0.4619 36 1 8.7640 7.2690 1.3653 37 1 8.4980 8.2931 -0.0856 38 1 10.8135 6.7133 -2.2132 39 1 13.3627 5.3332 -1.2357 40 1 10.1868 4.7302 0.5449 41 1 10.0472 4.6848 -1.2335 42 1 3.6294 3.4314 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365495321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:37 Heat of formation + Delta-G solvation = -119.146314 kcal Electronic energy + Delta-G solvation = -28307.525295 eV Core-core repulsion = 24060.071894 eV Total energy + Delta-G solvation = -4247.453400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.20775 -41.47962 -40.53203 -39.05508 -37.62902 -36.12688 -36.00906 -34.22761 -33.88264 -32.05524 -30.88816 -29.53203 -28.89881 -27.13901 -25.98448 -24.67630 -24.10109 -22.59540 -21.46248 -20.94653 -19.96324 -19.14367 -18.86355 -18.41451 -17.65429 -17.49525 -17.19423 -16.92484 -16.76704 -16.57799 -16.12992 -15.98476 -15.53575 -15.17979 -14.80085 -14.72134 -14.70387 -14.56793 -14.28761 -13.87134 -13.51041 -13.32117 -13.28236 -12.90511 -12.86950 -12.53687 -12.35636 -12.25033 -12.10839 -11.97369 -11.96630 -11.85791 -11.49740 -11.17771 -11.10528 -10.66414 -10.35089 -10.21801 -9.72566 -9.27707 -8.26183 -6.41717 -0.54140 -0.01104 1.19625 1.39701 1.40592 1.43850 1.54187 1.58773 2.05939 2.37726 2.71761 2.81243 3.00806 3.43105 3.46732 3.74458 3.78334 3.86358 4.01375 4.09137 4.17604 4.30793 4.35913 4.38038 4.55094 4.56443 4.58280 4.71204 4.75766 4.91802 5.04783 5.08807 5.12679 5.16987 5.20426 5.35046 5.47201 5.61342 5.74696 5.82158 6.07578 6.50332 6.64144 6.71483 7.06628 7.27673 7.35306 7.48789 8.80060 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.002275 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.652647 B =12302.081668 C =12904.360314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.520 3.480 4 O -0.522 6.522 5 C -0.061 4.061 6 C -0.133 4.133 7 C 0.122 3.878 8 N -0.499 5.499 9 C 0.360 3.640 10 N -0.655 5.655 11 C 0.704 3.296 12 O -0.580 6.580 13 N -0.631 5.631 14 C 0.101 3.899 15 C -0.110 4.110 16 C 0.232 3.768 17 O -0.586 6.586 18 C -0.555 4.555 19 H 0.068 0.932 20 C 0.025 3.975 21 N -0.915 5.915 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.278 1.278 26 C 0.144 3.856 27 C -0.141 4.141 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.138 0.862 31 H 0.184 0.816 32 H 0.189 0.811 33 H 0.429 0.571 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.375 0.625 39 H 0.269 0.731 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.495 -9.834 2.414 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.365 3.635 4 O -0.411 6.411 5 C -0.071 4.071 6 C -0.155 4.155 7 C -0.036 4.036 8 N -0.214 5.214 9 C 0.129 3.871 10 N -0.306 5.306 11 C 0.405 3.595 12 O -0.455 6.455 13 N -0.368 5.368 14 C -0.020 4.020 15 C -0.147 4.147 16 C 0.192 3.808 17 O -0.394 6.394 18 C -0.593 4.593 19 H 0.086 0.914 20 C -0.176 4.176 21 N -0.554 5.554 22 Si 0.788 3.212 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.204 1.204 26 C 0.020 3.980 27 C -0.166 4.166 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.201 0.799 32 H 0.206 0.794 33 H 0.270 0.730 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.224 0.776 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -22.732 -9.954 2.452 24.937 hybrid contribution 0.638 0.202 0.106 0.677 sum -22.095 -9.753 2.557 24.286 Atomic orbital electron populations 1.23678 0.73625 1.06261 1.02908 1.86525 1.25620 1.30825 1.83417 1.20953 0.88417 0.81925 0.72218 1.90838 1.67022 1.36966 1.46293 1.19194 0.89902 0.94408 1.03580 1.22637 0.94133 0.99913 0.98775 1.23229 0.92951 0.94472 0.92977 1.67531 1.41761 0.98816 1.13302 1.18168 0.87741 0.85711 0.95496 1.42541 1.05327 1.07767 1.74935 1.15715 0.81791 0.83166 0.78807 1.90978 1.65645 1.32400 1.56503 1.47990 1.08772 1.04880 1.75183 1.22562 0.96479 0.80914 1.02062 1.22758 0.92586 0.99067 1.00325 1.19737 0.93483 0.86834 0.80748 1.86095 1.55678 1.71082 1.26568 1.21852 0.92897 1.29684 1.14893 0.91377 1.25820 1.02230 0.93760 0.95830 1.69811 1.26500 1.31805 1.27306 0.85433 0.79005 0.77917 0.78834 1.18809 1.21104 1.20361 1.22392 0.76764 1.00390 0.98470 1.21500 0.91522 0.99932 1.03606 0.91567 0.91619 0.84445 0.79910 0.79382 0.73047 0.90672 0.87692 0.89661 0.88962 0.77588 0.92127 0.95006 0.95247 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.97 9.92 -55.84 -0.55 -5.53 16 3 C 0.52 9.92 7.92 70.43 0.56 10.47 16 4 O -0.52 -12.33 16.23 20.09 0.33 -12.00 16 5 C -0.06 -1.21 5.90 -19.91 -0.12 -1.32 16 6 C -0.13 -2.22 9.70 22.64 0.22 -2.00 16 7 C 0.12 2.71 11.16 84.63 0.94 3.65 16 8 N -0.50 -16.22 7.85 -193.20 -1.52 -17.74 16 9 C 0.36 10.42 7.42 132.94 0.99 11.41 16 10 N -0.65 -19.54 5.34 -322.25 -1.72 -21.26 16 11 C 0.70 28.69 8.45 179.05 1.51 30.20 16 12 O -0.58 -28.96 14.93 -3.97 -0.06 -29.02 16 13 N -0.63 -25.59 3.32 -829.31 -2.76 -28.34 16 14 C 0.10 3.16 6.62 86.94 0.58 3.73 16 15 C -0.11 -4.02 6.24 32.07 0.20 -3.82 16 16 C 0.23 11.11 0.85 -10.35 -0.01 11.11 16 17 O -0.59 -29.30 13.07 -148.98 -1.95 -31.25 16 18 C -0.56 -28.94 8.13 25.60 0.21 -28.73 16 19 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 20 C 0.02 1.29 5.28 84.66 0.45 1.74 16 21 N -0.92 -50.10 10.96 21.45 0.24 -49.86 16 22 Si 0.96 42.26 29.54 68.60 2.03 44.28 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.14 7.15 5.23 86.73 0.45 7.60 16 27 C -0.14 -3.11 9.51 22.79 0.22 -2.90 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.18 1.74 7.71 -2.91 -0.02 1.72 16 32 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.43 9.19 7.15 -92.71 -0.66 8.52 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.11 2.27 7.21 -2.39 -0.02 2.25 16 36 H 0.08 2.99 8.04 -2.39 -0.02 2.97 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.38 19.71 7.45 -74.06 -0.55 19.15 16 39 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 40 H 0.03 1.76 7.81 -2.39 -0.02 1.74 16 41 H 0.03 1.64 7.92 -2.38 -0.02 1.62 16 42 H 0.17 2.99 7.74 -2.91 -0.02 2.96 16 Total: -1.00 -75.56 361.36 1.30 -74.26 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.13 Total: 33.90 kcal Atomic # 6 Polarization: 35.17 SS G_CDS: 7.39 Total: 42.57 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -5.76 Total: -117.21 kcal Atomic # 8 Polarization: -75.57 SS G_CDS: -2.23 Total: -77.80 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -75.56 1.30 -74.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365495321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.882 kcal (2) G-P(sol) polarization free energy of solvation -75.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds