Wall clock time and date at job start Tue Mar 31 2020 18:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.46815 * 2 1 4 4 C 1.34641 * 116.99771 * 179.97438 * 3 2 1 5 5 O 1.21397 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.48372 * 119.99748 * 180.27059 * 4 3 2 7 7 N 1.30690 * 126.41188 * 359.75445 * 6 4 3 8 8 O 1.21289 * 110.10608 * 179.97438 * 7 6 4 9 9 C 1.33692 * 110.02059 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.44329 * 180.02562 * 9 8 7 11 11 N 1.46905 * 109.46875 * 269.97663 * 10 9 8 12 12 C 1.46906 * 110.99823 * 190.00138 * 11 10 9 13 13 C 1.50692 * 109.47214 * 75.64571 * 12 11 10 14 14 H 1.07994 * 120.00454 * 5.04753 * 13 12 11 15 15 C 1.37884 * 119.99819 * 185.05210 * 13 12 11 16 16 N 1.31509 * 119.99863 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99689 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47340 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47122 * 120.00093 * 17 15 13 20 20 H 1.48510 * 109.46838 * 239.99515 * 17 15 13 21 21 C 1.46894 * 110.99964 * 66.04517 * 11 10 9 22 22 C 1.50704 * 109.46927 * 195.90478 * 21 11 10 23 23 C 1.34513 * 125.78747 * 90.00293 * 22 21 11 24 24 C 1.41385 * 106.84194 * 180.02562 * 23 22 21 25 25 C 1.34516 * 106.84055 * 359.97438 * 24 23 22 26 26 O 1.34304 * 125.79249 * 269.69422 * 22 21 11 27 27 N 1.30932 * 107.11350 * 359.72673 * 9 8 7 28 28 H 1.09004 * 109.46764 * 60.00168 * 1 2 3 29 29 H 1.08999 * 109.46774 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47373 * 300.00206 * 1 2 3 31 31 H 1.08996 * 109.47198 * 240.00224 * 2 1 3 32 32 H 1.08990 * 109.47195 * 119.99536 * 2 1 3 33 33 H 1.09002 * 109.47100 * 29.97421 * 10 9 8 34 34 H 1.09002 * 109.47366 * 149.98016 * 10 9 8 35 35 H 1.09002 * 109.46718 * 195.64412 * 12 11 10 36 36 H 1.09000 * 109.46763 * 315.64006 * 12 11 10 37 37 H 0.97000 * 119.99698 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47531 * 315.90396 * 21 11 10 39 39 H 1.08998 * 109.47370 * 75.91061 * 21 11 10 40 40 H 1.07998 * 126.58426 * 0.03005 * 23 22 21 41 41 H 1.08002 * 126.58320 * 179.97438 * 24 23 22 42 42 H 1.08000 * 125.79146 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5455 0.0005 5 8 4.0883 0.5828 0.0005 6 6 3.9158 2.9166 0.0066 7 7 3.2404 4.0354 0.0073 8 8 3.9999 4.9810 0.0134 9 6 5.2659 4.5511 0.0168 10 6 6.5032 5.4112 0.0250 11 7 6.9110 5.6955 -1.3574 12 6 8.2369 6.3271 -1.3958 13 6 9.2964 5.2868 -1.1390 14 1 9.0208 4.2468 -1.0458 15 6 10.6179 5.6628 -1.0230 16 7 10.9537 6.9292 -1.1370 17 14 11.9315 4.3731 -0.7054 18 1 11.2984 3.0326 -0.6192 19 1 12.9163 4.3854 -1.8167 20 1 12.6239 4.6762 0.5729 21 6 5.9116 6.5275 -2.0406 22 6 6.1483 6.4773 -3.5281 23 6 5.6069 5.5893 -4.3812 24 6 6.0971 5.9069 -5.6687 25 6 6.9084 6.9703 -5.5255 26 8 6.9310 7.3150 -4.2276 27 7 5.2284 3.2424 0.0182 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 6.2914 6.3476 0.5412 34 1 7.3074 4.8860 0.5403 35 1 8.3976 6.7750 -2.3765 36 1 8.2933 7.1002 -0.6296 37 1 11.8834 7.1936 -1.0557 38 1 4.9128 6.1515 -1.8188 39 1 5.9976 7.5572 -1.6937 40 1 4.9279 4.7877 -4.1308 41 1 5.8649 5.3942 -6.5905 42 1 7.4471 7.4654 -6.3199 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412950392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:37 Heat of formation + Delta-G solvation = 20.297001 kcal Electronic energy + Delta-G solvation = -28507.695741 eV Core-core repulsion = 24266.289056 eV Total energy + Delta-G solvation = -4241.406685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.78884 -42.10763 -40.64988 -37.36994 -37.07177 -35.72253 -33.20139 -32.75012 -32.41472 -31.95101 -30.30799 -27.95748 -26.64942 -26.49838 -24.28968 -23.52886 -22.93811 -21.69102 -21.29014 -20.95954 -19.83939 -18.43130 -18.27570 -17.68636 -17.00296 -16.86855 -16.56251 -16.48692 -15.83516 -15.14661 -14.76076 -14.53899 -14.48410 -14.08607 -14.06821 -13.46062 -13.20507 -13.04823 -12.59659 -12.43688 -12.41431 -12.25114 -12.15285 -12.01859 -11.82972 -11.79254 -11.46828 -11.34420 -11.21856 -11.06985 -10.92499 -10.74200 -10.66765 -10.30508 -9.97155 -9.51500 -9.33159 -8.50228 -8.09759 -7.70599 -6.08820 -4.11038 0.58799 1.46423 1.77647 2.15378 2.63714 2.67546 3.01039 3.30339 3.38777 3.42244 3.45827 3.63750 3.88456 4.38471 4.55434 4.56257 4.69177 4.74970 4.88713 5.03807 5.24070 5.26970 5.30769 5.34323 5.38681 5.39484 5.43339 5.56443 5.61553 5.69161 5.79925 5.93742 5.99993 6.16495 6.28833 6.48624 6.82256 6.91476 7.04785 7.23887 7.56589 7.64514 7.73880 7.91102 7.97062 8.30993 8.98115 9.54416 11.01223 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.003417 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.134059 B = 8193.385523 C = 9845.065244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.341 6.341 4 C 0.567 3.433 5 O -0.462 6.462 6 C 0.140 3.860 7 N -0.329 5.329 8 O 0.096 5.904 9 C 0.215 3.785 10 C 0.149 3.851 11 N -0.525 5.525 12 C 0.193 3.807 13 C -0.512 4.512 14 H 0.069 0.931 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.123 3.877 22 C 0.018 3.982 23 C -0.203 4.203 24 C -0.218 4.218 25 C -0.042 4.042 26 O -0.167 6.167 27 N -0.420 5.420 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.044 0.956 36 H 0.008 0.992 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -4.393 -0.197 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.257 6.257 4 C 0.405 3.595 5 O -0.343 6.343 6 C -0.131 4.131 7 N -0.034 5.034 8 O 0.025 5.975 9 C -0.007 4.007 10 C 0.020 3.980 11 N -0.253 5.253 12 C 0.069 3.931 13 C -0.551 4.551 14 H 0.087 0.913 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.005 4.005 22 C -0.033 4.033 23 C -0.223 4.223 24 C -0.237 4.237 25 C -0.111 4.111 26 O -0.062 6.062 27 N -0.154 5.154 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -18.366 -5.346 -0.294 19.130 hybrid contribution 0.865 -0.155 0.192 0.900 sum -17.501 -5.501 -0.102 18.345 Atomic orbital electron populations 1.21823 0.91993 1.03231 1.03886 1.23220 0.95718 0.78819 1.03301 1.86566 1.21801 1.33420 1.83868 1.18683 0.81285 0.85410 0.74125 1.90918 1.60455 1.40002 1.42955 1.24101 0.87563 0.93404 1.08055 1.75019 1.17000 0.95557 1.15795 1.85350 1.16362 1.31509 1.64301 1.29468 0.88031 0.89781 0.93381 1.20781 0.87625 0.96104 0.93517 1.62199 1.04475 1.47205 1.11381 1.19938 0.81080 0.93994 0.98068 1.21182 0.90765 0.94342 1.48762 0.91305 1.24959 0.98661 0.95381 0.95283 1.69959 1.17988 1.15366 1.50184 0.86460 0.81496 0.81977 0.77698 1.19397 1.21065 1.21046 1.20580 0.96257 0.97676 0.85948 1.22058 0.94794 0.92511 0.93968 1.21384 1.06314 1.02010 0.92609 1.21710 1.03051 1.00318 0.98654 1.23904 1.03250 0.99884 0.84024 1.84074 1.54723 1.48616 1.18785 1.72139 1.15125 1.10595 1.17544 0.91209 0.89785 0.91243 0.90531 0.90574 0.90772 0.84183 0.93817 0.97421 0.92870 0.89609 0.92599 0.84422 0.84049 0.78616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.34 -4.29 10.23 -40.33 -0.41 -4.71 16 4 C 0.57 8.69 7.99 34.90 0.28 8.97 16 5 O -0.46 -7.98 16.89 -19.19 -0.32 -8.31 16 6 C 0.14 2.28 8.04 -156.18 -1.26 1.03 16 7 N -0.33 -4.97 12.20 30.93 0.38 -4.60 16 8 O 0.10 1.36 10.33 17.98 0.19 1.55 16 9 C 0.21 3.36 7.08 -13.00 -0.09 3.26 16 10 C 0.15 2.40 5.42 -4.97 -0.03 2.37 16 11 N -0.53 -10.10 4.36 -238.96 -1.04 -11.14 16 12 C 0.19 4.54 4.59 -4.98 -0.02 4.52 16 13 C -0.51 -13.54 8.55 -34.44 -0.29 -13.83 16 14 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -25.39 13.29 55.43 0.74 -24.66 16 17 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.12 2.04 5.37 -4.98 -0.03 2.01 16 22 C 0.02 0.32 6.12 -35.62 -0.22 0.10 16 23 C -0.20 -3.43 10.81 -39.70 -0.43 -3.86 16 24 C -0.22 -3.32 10.91 -39.70 -0.43 -3.76 16 25 C -0.04 -0.65 12.09 29.42 0.36 -0.30 16 26 O -0.17 -3.11 9.80 5.70 0.06 -3.05 16 27 N -0.42 -7.48 11.57 -9.94 -0.12 -7.60 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 34 H 0.14 2.42 7.43 -51.93 -0.39 2.04 16 35 H 0.04 1.14 6.46 -51.93 -0.34 0.80 16 36 H 0.01 0.19 8.00 -51.93 -0.42 -0.22 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.09 1.24 6.17 -51.93 -0.32 0.91 16 39 H 0.06 0.86 8.05 -51.93 -0.42 0.45 16 40 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.20 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -32.27 373.68 -6.80 -39.07 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.22 Total: -0.66 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.65 Total: 2.27 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.04 Total: -48.00 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.49 Total: -14.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.27 -6.80 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412950392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.370 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds