Wall clock time and date at job start Tue Mar 31 2020 18:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.46815 * 2 1 4 4 C 1.34641 * 116.99771 * 179.97438 * 3 2 1 5 5 O 1.21397 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.48372 * 119.99748 * 180.27059 * 4 3 2 7 7 N 1.30690 * 126.41188 * 359.75445 * 6 4 3 8 8 O 1.21289 * 110.10608 * 179.97438 * 7 6 4 9 9 C 1.33692 * 110.02059 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.44329 * 180.02562 * 9 8 7 11 11 N 1.46905 * 109.46875 * 269.97663 * 10 9 8 12 12 C 1.46906 * 110.99823 * 190.00138 * 11 10 9 13 13 C 1.50692 * 109.47214 * 75.64571 * 12 11 10 14 14 H 1.07994 * 120.00454 * 5.04753 * 13 12 11 15 15 C 1.37884 * 119.99819 * 185.05210 * 13 12 11 16 16 N 1.31509 * 119.99863 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99689 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47340 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47122 * 120.00093 * 17 15 13 20 20 H 1.48510 * 109.46838 * 239.99515 * 17 15 13 21 21 C 1.46894 * 110.99964 * 66.04517 * 11 10 9 22 22 C 1.50704 * 109.46927 * 195.90478 * 21 11 10 23 23 C 1.34513 * 125.78747 * 90.00293 * 22 21 11 24 24 C 1.41385 * 106.84194 * 180.02562 * 23 22 21 25 25 C 1.34516 * 106.84055 * 359.97438 * 24 23 22 26 26 O 1.34304 * 125.79249 * 269.69422 * 22 21 11 27 27 N 1.30932 * 107.11350 * 359.72673 * 9 8 7 28 28 H 1.09004 * 109.46764 * 60.00168 * 1 2 3 29 29 H 1.08999 * 109.46774 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47373 * 300.00206 * 1 2 3 31 31 H 1.08996 * 109.47198 * 240.00224 * 2 1 3 32 32 H 1.08990 * 109.47195 * 119.99536 * 2 1 3 33 33 H 1.09002 * 109.47100 * 29.97421 * 10 9 8 34 34 H 1.09002 * 109.47366 * 149.98016 * 10 9 8 35 35 H 1.09002 * 109.46718 * 195.64412 * 12 11 10 36 36 H 1.09000 * 109.46763 * 315.64006 * 12 11 10 37 37 H 0.97000 * 119.99698 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47531 * 315.90396 * 21 11 10 39 39 H 1.08998 * 109.47370 * 75.91061 * 21 11 10 40 40 H 1.07998 * 126.58426 * 0.03005 * 23 22 21 41 41 H 1.08002 * 126.58320 * 179.97438 * 24 23 22 42 42 H 1.08000 * 125.79146 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5455 0.0005 5 8 4.0883 0.5828 0.0005 6 6 3.9158 2.9166 0.0066 7 7 3.2404 4.0354 0.0073 8 8 3.9999 4.9810 0.0134 9 6 5.2659 4.5511 0.0168 10 6 6.5032 5.4112 0.0250 11 7 6.9110 5.6955 -1.3574 12 6 8.2369 6.3271 -1.3958 13 6 9.2964 5.2868 -1.1390 14 1 9.0208 4.2468 -1.0458 15 6 10.6179 5.6628 -1.0230 16 7 10.9537 6.9292 -1.1370 17 14 11.9315 4.3731 -0.7054 18 1 11.2984 3.0326 -0.6192 19 1 12.9163 4.3854 -1.8167 20 1 12.6239 4.6762 0.5729 21 6 5.9116 6.5275 -2.0406 22 6 6.1483 6.4773 -3.5281 23 6 5.6069 5.5893 -4.3812 24 6 6.0971 5.9069 -5.6687 25 6 6.9084 6.9703 -5.5255 26 8 6.9310 7.3150 -4.2276 27 7 5.2284 3.2424 0.0182 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 6.2914 6.3476 0.5412 34 1 7.3074 4.8860 0.5403 35 1 8.3976 6.7750 -2.3765 36 1 8.2933 7.1002 -0.6296 37 1 11.8834 7.1936 -1.0557 38 1 4.9128 6.1515 -1.8188 39 1 5.9976 7.5572 -1.6937 40 1 4.9279 4.7877 -4.1308 41 1 5.8649 5.3942 -6.5905 42 1 7.4471 7.4654 -6.3199 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412950392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:37 Heat of formation + Delta-G solvation = -1.691596 kcal Electronic energy + Delta-G solvation = -28508.649238 eV Core-core repulsion = 24266.289056 eV Total energy + Delta-G solvation = -4242.360182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.04946 -43.38561 -41.75445 -38.84727 -38.16330 -37.00584 -34.89343 -34.20851 -33.79020 -32.68676 -31.65129 -29.66249 -28.05687 -27.66797 -25.87180 -24.61596 -24.05612 -23.08152 -22.52798 -22.25440 -21.17051 -19.69002 -19.47219 -18.84359 -18.55608 -18.17708 -17.83985 -17.70540 -17.24792 -16.79863 -16.21034 -15.95654 -15.70071 -15.34897 -15.06476 -14.78549 -14.45176 -14.17274 -13.78492 -13.72506 -13.67056 -13.47811 -13.34778 -13.25178 -13.17718 -13.00327 -12.80484 -12.66216 -12.58363 -12.52642 -12.41042 -12.29780 -12.03098 -11.71623 -11.51718 -11.28542 -10.76023 -10.56285 -9.40724 -9.20344 -8.15963 -6.23918 -0.63855 0.19709 0.71586 0.87667 1.35537 1.42246 1.43507 1.45626 1.57856 1.77238 2.21984 2.42992 2.44285 2.74196 3.17844 3.26544 3.57149 3.78372 3.92732 3.93724 4.03801 4.11834 4.16459 4.22370 4.25399 4.37071 4.43074 4.52440 4.63557 4.66306 4.86742 4.92357 4.95331 5.04710 5.14964 5.20374 5.23762 5.27427 5.66838 5.70113 6.02957 6.07971 6.12822 6.32845 6.41345 6.67526 6.90977 7.45179 8.93791 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.003417 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.134059 B = 8193.385523 C = 9845.065244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.339 6.339 4 C 0.571 3.429 5 O -0.489 6.489 6 C 0.128 3.872 7 N -0.321 5.321 8 O 0.116 5.884 9 C 0.225 3.775 10 C 0.152 3.848 11 N -0.540 5.540 12 C 0.213 3.787 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.276 1.276 21 C 0.126 3.874 22 C -0.012 4.012 23 C -0.211 4.211 24 C -0.224 4.224 25 C -0.048 4.048 26 O -0.194 6.194 27 N -0.451 5.451 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.016 0.984 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.527 -4.987 -0.399 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.254 6.254 4 C 0.410 3.590 5 O -0.373 6.373 6 C -0.142 4.142 7 N -0.023 5.023 8 O 0.043 5.957 9 C 0.004 3.996 10 C 0.023 3.977 11 N -0.267 5.267 12 C 0.088 3.912 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.567 5.567 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.001 4.001 22 C -0.063 4.063 23 C -0.231 4.231 24 C -0.243 4.243 25 C -0.115 4.115 26 O -0.090 6.090 27 N -0.185 5.185 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.035 0.965 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -19.758 -5.958 -0.490 20.643 hybrid contribution 1.159 0.011 0.203 1.176 sum -18.600 -5.947 -0.287 19.529 Atomic orbital electron populations 1.21867 0.89511 1.04944 1.03930 1.23655 0.97558 0.77112 1.03816 1.86581 1.20016 1.35785 1.83051 1.18656 0.82024 0.84750 0.73536 1.90897 1.61254 1.40598 1.44529 1.24287 0.87217 0.94182 1.08560 1.74999 1.16797 0.95379 1.15168 1.85351 1.15731 1.30985 1.63673 1.29151 0.88189 0.89160 0.93069 1.20734 0.87436 0.97494 0.92075 1.61941 1.03583 1.47615 1.13525 1.19460 0.82937 0.92881 0.95925 1.21433 0.91819 0.94436 1.48072 0.92340 1.25668 1.00632 0.97009 0.95288 1.70049 1.18454 1.16869 1.51331 0.85553 0.79054 0.79606 0.77743 1.19496 1.20990 1.20140 1.20657 0.96234 0.97932 0.85295 1.22377 0.95766 0.93376 0.94748 1.21666 1.06191 1.01788 0.93427 1.22086 1.02678 1.00390 0.99124 1.24727 1.03087 1.00052 0.83619 1.84057 1.55317 1.49390 1.20237 1.72118 1.16252 1.11699 1.18470 0.91236 0.87177 0.91088 0.90213 0.89996 0.87228 0.85640 0.96546 0.98592 0.92738 0.87446 0.91620 0.83741 0.81260 0.75167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.34 -8.21 10.23 -55.50 -0.57 -8.77 16 4 C 0.57 17.29 7.99 70.52 0.56 17.85 16 5 O -0.49 -16.92 16.89 20.17 0.34 -16.58 16 6 C 0.13 4.10 8.04 137.29 1.10 5.21 16 7 N -0.32 -9.26 12.20 -59.34 -0.72 -9.99 16 8 O 0.12 3.11 10.33 74.40 0.77 3.87 16 9 C 0.23 6.82 7.08 88.36 0.63 7.45 16 10 C 0.15 4.76 5.42 85.55 0.46 5.22 16 11 N -0.54 -20.68 4.36 -909.94 -3.97 -24.65 16 12 C 0.21 10.20 4.59 85.55 0.39 10.59 16 13 C -0.52 -27.81 8.55 25.60 0.22 -27.59 16 14 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 15 C 0.01 0.70 5.46 84.66 0.46 1.17 16 16 N -0.93 -53.04 13.29 21.45 0.28 -52.76 16 17 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.13 4.08 5.37 85.56 0.46 4.54 16 22 C -0.01 -0.44 6.12 24.83 0.15 -0.29 16 23 C -0.21 -6.94 10.81 22.19 0.24 -6.70 16 24 C -0.22 -6.49 10.91 22.19 0.24 -6.24 16 25 C -0.05 -1.41 12.09 66.97 0.81 -0.60 16 26 O -0.19 -7.22 9.80 -2.52 -0.02 -7.25 16 27 N -0.45 -15.91 11.57 -302.78 -3.50 -19.41 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 2.67 8.12 -2.39 -0.02 2.65 16 34 H 0.13 4.36 7.43 -2.39 -0.02 4.34 16 35 H 0.02 0.88 6.46 -2.39 -0.02 0.87 16 36 H 0.00 -0.18 8.00 -2.39 -0.02 -0.20 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.11 2.93 6.17 -2.39 -0.01 2.92 16 39 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.23 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -69.93 373.68 2.61 -67.33 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.05 Total: 11.24 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.92 Total: 11.19 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -7.91 Total: -106.80 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: 0.52 Total: -28.73 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.93 2.61 -67.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412950392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.635 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds