Wall clock time and date at job start Tue Mar 31 2020 19:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34748 * 116.99964 * 2 1 4 4 O 1.21503 * 119.99743 * 359.97438 * 3 2 1 5 5 C 1.47463 * 120.00285 * 179.97438 * 3 2 1 6 6 C 1.40347 * 120.48687 * 179.97438 * 5 3 2 7 7 C 1.36915 * 118.47673 * 179.97438 * 6 5 3 8 8 C 1.39291 * 119.38741 * 0.02562 * 7 6 5 9 9 N 1.38904 * 119.52665 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00572 * 174.63392 * 9 8 7 11 11 O 1.21577 * 119.99390 * 4.68886 * 10 9 8 12 12 N 1.34775 * 120.00402 * 184.68966 * 10 9 8 13 13 C 1.47424 * 125.64476 * 0.02562 * 12 10 9 14 14 C 1.54910 * 104.82812 * 204.09197 * 13 12 10 15 15 C 1.55154 * 101.58637 * 322.99054 * 14 13 12 16 16 O 1.42901 * 110.72181 * 277.14487 * 15 14 13 17 17 C 1.50697 * 110.72182 * 154.04027 * 15 14 13 18 18 H 1.08004 * 120.00312 * 266.48202 * 17 15 14 19 19 C 1.37876 * 119.99967 * 86.48747 * 17 15 14 20 20 N 1.31517 * 120.00490 * 174.01517 * 19 17 15 21 21 Si 1.86803 * 119.99849 * 354.01421 * 19 17 15 22 22 H 1.48510 * 109.46753 * 87.05380 * 21 19 17 23 23 H 1.48499 * 109.47320 * 207.04762 * 21 19 17 24 24 H 1.48498 * 109.47256 * 327.05473 * 21 19 17 25 25 C 1.47014 * 125.64868 * 179.71399 * 12 10 9 26 26 N 1.32552 * 120.95283 * 0.25199 * 8 7 6 27 27 C 1.31667 * 121.64805 * 359.47418 * 26 8 7 28 28 H 1.08993 * 109.47389 * 299.99748 * 1 2 3 29 29 H 1.09005 * 109.47132 * 60.00403 * 1 2 3 30 30 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.76400 * 359.96188 * 6 5 3 32 32 H 1.07993 * 120.30802 * 180.02562 * 7 6 5 33 33 H 0.96999 * 119.99779 * 354.35089 * 9 8 7 34 34 H 1.08991 * 110.37005 * 322.92880 * 13 12 10 35 35 H 1.09002 * 110.36832 * 85.25547 * 13 12 10 36 36 H 1.08999 * 111.00793 * 81.06948 * 14 13 12 37 37 H 1.09008 * 111.00461 * 204.88069 * 14 13 12 38 38 H 0.96700 * 113.99774 * 184.61319 * 16 15 14 39 39 H 0.96996 * 120.00073 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88583 * 298.39568 * 25 12 10 41 41 H 1.09001 * 109.88569 * 59.55829 * 25 12 10 42 42 H 1.07999 * 119.74347 * 180.24306 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5363 1.2779 0.0006 6 6 4.1840 2.5230 0.0000 7 6 5.5529 2.5467 0.0011 8 6 6.2574 1.3450 0.0022 9 7 7.6462 1.3657 0.0028 10 6 8.3375 0.2139 0.1130 11 8 7.7484 -0.8495 0.1260 12 7 9.6815 0.2410 0.2087 13 6 10.5187 1.4545 0.2063 14 6 11.9088 0.9762 -0.2821 15 6 12.0099 -0.4208 0.3853 16 8 12.4569 -0.3039 1.7376 17 6 12.9261 -1.3225 -0.4011 18 1 12.5193 -1.9829 -1.1527 19 6 14.2837 -1.3045 -0.1612 20 7 15.0692 -2.1720 -0.7612 21 14 15.0074 -0.0478 1.0164 22 1 14.9577 -0.5813 2.4014 23 1 16.4180 0.2264 0.6420 24 1 14.2219 1.2102 0.9419 25 6 10.5551 -0.9342 0.3393 26 7 5.6215 0.1820 -0.0028 27 6 4.3066 0.1135 0.0013 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6157 3.4413 -0.0014 32 1 6.0817 3.4883 0.0012 33 1 8.1187 2.2088 -0.0803 34 1 10.1100 2.1960 -0.4800 35 1 10.5915 1.8672 1.2126 36 1 11.9338 0.8928 -1.3686 37 1 12.6976 1.6384 0.0750 38 1 12.6045 -1.1522 2.1777 39 1 16.0242 -2.1595 -0.5921 40 1 10.3199 -1.4707 1.2585 41 1 10.4231 -1.5916 -0.5201 42 1 3.8204 -0.8508 0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414480453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:44 Heat of formation + Delta-G solvation = -117.150311 kcal Electronic energy + Delta-G solvation = -28172.650638 eV Core-core repulsion = 23925.283790 eV Total energy + Delta-G solvation = -4247.366847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.24217 -41.47568 -40.58752 -39.28607 -37.53692 -36.38775 -36.14233 -34.43911 -33.68975 -32.34767 -31.34256 -29.98060 -28.59204 -27.26654 -25.35240 -25.10486 -23.95771 -22.35781 -21.60057 -21.16067 -19.97427 -19.37672 -19.15697 -18.55681 -18.15265 -17.42033 -17.18591 -17.05809 -16.92054 -16.45646 -16.13407 -15.60737 -15.59086 -15.22765 -14.96657 -14.76039 -14.61096 -14.25120 -14.18073 -14.09675 -13.94186 -13.80739 -13.23512 -13.22344 -13.01985 -12.76128 -12.34600 -12.22313 -12.01591 -11.83128 -11.81530 -11.81106 -11.48508 -11.22010 -11.08689 -10.63189 -10.43566 -10.25350 -9.79912 -9.37452 -8.33915 -6.49378 -0.58099 0.22977 1.22122 1.35580 1.52612 1.54873 1.67586 1.74393 2.03115 2.43198 2.63123 2.80365 2.97832 3.32919 3.50123 3.63175 3.78279 3.79866 3.83217 3.99835 4.06825 4.29811 4.31240 4.36175 4.45188 4.53083 4.58782 4.70605 4.74403 4.83883 4.94855 4.97130 5.06666 5.12368 5.21875 5.27596 5.39691 5.52020 5.57942 5.73732 6.03116 6.56709 6.58984 6.63814 6.94010 6.98377 7.27543 7.41959 8.79437 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.036994 B = 0.002140 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.688031 B =13079.324215 C =13530.784914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.525 3.475 4 O -0.534 6.534 5 C -0.232 4.232 6 C 0.021 3.979 7 C -0.199 4.199 8 C 0.398 3.602 9 N -0.648 5.648 10 C 0.705 3.295 11 O -0.574 6.574 12 N -0.625 5.625 13 C 0.102 3.898 14 C -0.122 4.122 15 C 0.219 3.781 16 O -0.562 6.562 17 C -0.552 4.552 18 H 0.037 0.963 19 C 0.024 3.976 20 N -0.936 5.936 21 Si 0.999 3.001 22 H -0.280 1.280 23 H -0.333 1.333 24 H -0.240 1.240 25 C 0.122 3.878 26 N -0.527 5.527 27 C 0.193 3.807 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.173 0.827 32 H 0.189 0.811 33 H 0.434 0.566 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.160 14.062 3.269 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.371 3.629 4 O -0.425 6.425 5 C -0.237 4.237 6 C -0.004 4.004 7 C -0.222 4.222 8 C 0.166 3.834 9 N -0.297 5.297 10 C 0.406 3.594 11 O -0.448 6.448 12 N -0.362 5.362 13 C -0.020 4.020 14 C -0.160 4.160 15 C 0.178 3.822 16 O -0.370 6.370 17 C -0.590 4.590 18 H 0.055 0.945 19 C -0.176 4.176 20 N -0.574 5.574 21 Si 0.830 3.170 22 H -0.207 1.207 23 H -0.265 1.265 24 H -0.164 1.164 25 C -0.002 4.002 26 N -0.242 5.242 27 C 0.033 3.967 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.190 0.810 32 H 0.206 0.794 33 H 0.276 0.724 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.231 0.769 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -23.157 13.322 3.114 26.896 hybrid contribution 0.417 0.053 0.183 0.458 sum -22.740 13.374 3.296 26.587 Atomic orbital electron populations 1.23594 0.74032 1.05867 1.02810 1.86552 1.25478 1.31820 1.83842 1.20878 0.88681 0.81556 0.71819 1.90817 1.67190 1.36644 1.47839 1.20092 0.90283 0.96589 1.16747 1.21435 0.93649 0.97475 0.87830 1.21445 0.94230 0.98026 1.08463 1.18886 0.83958 0.90653 0.89944 1.42566 1.03540 1.10148 1.73422 1.15684 0.80667 0.84261 0.78760 1.91017 1.68006 1.29813 1.55978 1.47709 1.03027 1.10144 1.75327 1.22585 0.90177 0.86569 1.02654 1.23064 0.96510 0.95880 1.00582 1.19940 0.88110 0.94084 0.80064 1.86118 1.87239 1.36420 1.27263 1.21390 0.92277 1.23379 1.21957 0.94501 1.25938 0.97297 0.96930 0.97446 1.70090 1.05460 1.36864 1.44982 0.84968 0.73549 0.80862 0.77624 1.20710 1.26532 1.16412 1.22376 0.90356 0.87227 1.00196 1.67845 1.10890 1.27644 1.17830 1.23262 0.87270 0.98943 0.87195 0.91601 0.91612 0.85093 0.80962 0.79362 0.72423 0.87579 0.89648 0.90198 0.89041 0.76865 0.92316 0.92526 0.93620 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.42 9.83 -56.59 -0.56 -6.98 16 3 C 0.52 10.74 7.90 70.25 0.55 11.30 16 4 O -0.53 -12.69 16.20 19.82 0.32 -12.37 16 5 C -0.23 -4.58 5.89 -20.00 -0.12 -4.70 16 6 C 0.02 0.33 9.65 22.47 0.22 0.54 16 7 C -0.20 -2.81 9.86 22.21 0.22 -2.59 16 8 C 0.40 9.26 7.41 133.09 0.99 10.25 16 9 N -0.65 -14.84 5.32 -322.26 -1.72 -16.56 16 10 C 0.70 23.58 8.45 179.05 1.51 25.09 16 11 O -0.57 -24.52 14.91 -3.96 -0.06 -24.58 16 12 N -0.62 -20.41 3.33 -829.76 -2.76 -23.17 16 13 C 0.10 2.56 6.61 86.86 0.57 3.13 16 14 C -0.12 -4.12 5.81 31.99 0.19 -3.94 16 15 C 0.22 8.95 0.70 -10.35 -0.01 8.95 16 16 O -0.56 -21.60 9.17 -148.98 -1.37 -22.96 16 17 C -0.55 -28.77 8.75 25.60 0.22 -28.55 16 18 H 0.04 2.20 7.79 -2.91 -0.02 2.18 16 19 C 0.02 1.28 5.46 84.65 0.46 1.75 16 20 N -0.94 -55.45 13.96 21.45 0.30 -55.15 16 21 Si 1.00 43.89 24.71 68.60 1.70 45.58 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.33 -15.34 7.11 99.48 0.71 -14.63 16 24 H -0.24 -9.48 5.00 99.48 0.50 -8.98 16 25 C 0.12 4.86 6.23 86.74 0.54 5.40 16 26 N -0.53 -15.49 7.85 -192.05 -1.51 -17.00 16 27 C 0.19 4.51 10.79 85.05 0.92 5.42 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.17 1.90 7.73 -2.91 -0.02 1.88 16 32 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 33 H 0.43 5.99 7.14 -92.71 -0.66 5.33 16 34 H 0.11 1.73 7.23 -2.39 -0.02 1.72 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.78 8.04 -2.39 -0.02 2.77 16 37 H 0.09 3.01 6.00 -2.38 -0.01 3.00 16 38 H 0.38 13.66 8.65 -74.06 -0.64 13.02 16 39 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 41 H 0.05 2.05 7.65 -2.39 -0.02 2.03 16 42 H 0.18 3.65 7.61 -2.91 -0.02 3.62 16 Total: -1.00 -78.86 353.39 1.40 -77.46 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.42 Total: 22.15 kcal Atomic # 6 Polarization: 26.12 SS G_CDS: 7.47 Total: 33.58 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -5.68 Total: -111.88 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -1.66 Total: -66.89 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.70 Total: 45.58 kcal Total: -78.86 1.40 -77.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414480453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.693 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds