Wall clock time and date at job start Tue Mar 31 2020 19:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34228 * 116.99534 * 2 1 4 4 O 1.20829 * 120.00223 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00013 * 180.02562 * 3 2 1 6 6 O 1.42893 * 110.91567 * 37.43964 * 5 3 2 7 7 C 1.55156 * 111.00383 * 161.34952 * 5 3 2 8 8 C 1.54336 * 103.01798 * 153.37768 * 7 5 3 9 9 N 1.47020 * 107.26670 * 338.14159 * 8 7 5 10 10 C 1.34777 * 125.65024 * 178.85108 * 9 8 7 11 11 O 1.21573 * 120.00353 * 179.68855 * 10 9 8 12 12 N 1.34781 * 119.99489 * 359.68711 * 10 9 8 13 13 C 1.39464 * 119.99399 * 185.44820 * 12 10 9 14 14 C 1.38646 * 119.64407 * 174.09754 * 13 12 10 15 15 C 1.40827 * 118.67266 * 180.20473 * 14 13 12 16 16 C 1.41547 * 120.99746 * 179.79789 * 15 14 13 17 17 H 1.08001 * 119.99700 * 19.20346 * 16 15 14 18 18 C 1.40020 * 120.00108 * 199.19990 * 16 15 14 19 19 N 1.30741 * 120.00250 * 35.64987 * 18 16 15 20 20 Si 1.86803 * 120.00216 * 215.64722 * 18 16 15 21 21 H 1.48500 * 109.47497 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46946 * 299.99942 * 20 18 16 23 23 H 1.48501 * 109.47231 * 60.00130 * 20 18 16 24 24 C 1.41162 * 118.00274 * 359.53083 * 15 14 13 25 25 C 1.36580 * 119.13056 * 0.24830 * 24 15 14 26 26 N 1.32071 * 121.26039 * 359.97438 * 25 24 15 27 27 C 1.47426 * 108.70317 * 358.58161 * 9 8 7 28 28 H 1.08993 * 109.47072 * 60.00328 * 1 2 3 29 29 H 1.09002 * 109.46427 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47115 * 299.99437 * 1 2 3 31 31 H 0.96696 * 114.00579 * 297.55913 * 6 5 3 32 32 H 1.09000 * 110.71675 * 271.93308 * 7 5 3 33 33 H 1.08996 * 110.72121 * 35.21014 * 7 5 3 34 34 H 1.08990 * 109.99183 * 218.66071 * 8 7 5 35 35 H 1.09001 * 109.77635 * 97.49684 * 8 7 5 36 36 H 0.96993 * 120.00394 * 5.45626 * 12 10 9 37 37 H 1.08004 * 120.66649 * 0.02562 * 14 13 12 38 38 H 0.97001 * 119.99998 * 2.88188 * 19 18 16 39 39 H 1.08003 * 120.42835 * 180.22721 * 24 15 14 40 40 H 1.07998 * 119.37194 * 180.02562 * 25 24 15 41 41 H 1.08993 * 110.36629 * 143.19981 * 27 9 8 42 42 H 1.08998 * 110.36767 * 265.52219 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 8 4.1310 0.2436 -0.8125 7 6 4.0496 2.6748 -0.4637 8 6 5.4240 2.8133 0.2245 9 7 5.4342 1.8901 1.3687 10 6 6.4665 1.6977 2.2135 11 8 6.3607 0.9093 3.1329 12 7 7.6161 2.3793 2.0391 13 6 8.7216 2.0986 2.8416 14 6 9.9351 2.7148 2.5770 15 6 11.0392 2.4132 3.3976 16 6 12.3019 3.0106 3.1693 17 1 12.3734 3.9151 2.5835 18 6 13.4584 2.4290 3.7030 19 7 13.5608 1.1277 3.7780 20 14 14.8550 3.5121 4.3078 21 1 15.9563 2.6589 4.8220 22 1 15.3574 4.3447 3.1853 23 1 14.3620 4.3939 5.3962 24 6 10.8473 1.5017 4.4583 25 6 9.6125 0.9481 4.6440 26 7 8.5998 1.2503 3.8520 27 6 4.1259 1.2146 1.4426 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9364 -0.6516 -0.5029 32 1 4.1537 2.7074 -1.5482 33 1 3.3687 3.4521 -0.1170 34 1 5.5651 3.8365 0.5725 35 1 6.2156 2.5452 -0.4753 36 1 7.6745 3.0649 1.3556 37 1 10.0326 3.4100 1.7562 38 1 12.8540 0.5645 3.4259 39 1 11.6662 1.2452 5.1140 40 1 9.4612 0.2506 5.4545 41 1 4.2512 0.1787 1.7579 42 1 3.4642 1.7433 2.1286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414482683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:22 Heat of formation + Delta-G solvation = -110.426097 kcal Electronic energy + Delta-G solvation = -28372.857139 eV Core-core repulsion = 24125.781876 eV Total energy + Delta-G solvation = -4247.075264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40524 -40.13629 -38.82916 -37.73664 -36.99264 -35.57544 -34.72337 -33.70178 -31.23068 -30.54023 -29.67349 -28.66162 -27.86835 -25.78681 -24.62434 -23.04243 -21.93272 -21.61144 -20.80934 -19.73431 -18.98227 -18.25372 -18.13028 -17.54993 -16.89040 -16.24848 -16.16435 -15.54658 -15.11362 -14.71630 -14.50639 -14.38419 -14.28510 -14.19792 -14.10126 -13.63263 -13.17806 -13.08321 -12.98274 -12.63989 -12.51637 -12.31444 -12.23474 -12.15264 -11.76668 -11.67728 -11.35987 -11.30104 -11.25767 -10.52567 -10.48916 -10.42688 -10.17083 -9.83240 -9.71012 -9.08900 -8.65277 -8.23415 -7.79682 -7.46129 -7.11423 -4.69781 1.54073 2.00783 2.57975 2.70888 2.80608 3.09602 3.25589 3.33010 3.53033 3.68066 3.74936 3.90365 3.97761 4.17393 4.35609 4.53278 4.65401 4.72710 4.74851 4.84961 5.07480 5.18978 5.31049 5.37576 5.43901 5.54176 5.65252 5.76530 5.81538 6.09308 6.47433 6.48150 6.66148 6.78583 6.96698 7.10235 7.18655 7.28804 7.34309 7.48682 7.66842 7.99528 8.04468 8.25486 8.57050 8.69768 8.98134 9.64814 9.82019 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.034254 B = 0.002151 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.224958 B =13013.092374 C =13371.575059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.454 3.546 4 O -0.493 6.493 5 C 0.130 3.870 6 O -0.525 6.525 7 C -0.105 4.105 8 C 0.100 3.900 9 N -0.637 5.637 10 C 0.714 3.286 11 O -0.523 6.523 12 N -0.665 5.665 13 C 0.379 3.621 14 C -0.318 4.318 15 C 0.131 3.869 16 C -0.516 4.516 17 H 0.081 0.919 18 C 0.046 3.954 19 N -0.767 5.767 20 Si 1.064 2.936 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.288 4.288 25 C 0.130 3.870 26 N -0.567 5.567 27 C 0.116 3.884 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.392 0.608 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.100 0.900 38 H 0.302 0.698 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.810 0.606 -9.566 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.295 3.705 4 O -0.379 6.379 5 C 0.086 3.914 6 O -0.332 6.332 7 C -0.143 4.143 8 C -0.023 4.023 9 N -0.379 5.379 10 C 0.416 3.584 11 O -0.393 6.393 12 N -0.313 5.313 13 C 0.152 3.848 14 C -0.345 4.345 15 C 0.123 3.877 16 C -0.544 4.544 17 H 0.099 0.901 18 C -0.180 4.180 19 N -0.388 5.388 20 Si 0.887 3.113 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.312 4.312 25 C -0.021 4.021 26 N -0.287 5.287 27 C -0.009 4.009 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.242 0.758 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.238 0.762 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.193 0.242 -8.298 19.998 hybrid contribution -1.249 0.368 -1.063 1.681 sum -19.443 0.610 -9.361 21.587 Atomic orbital electron populations 1.23349 0.75623 1.04132 1.02786 1.86491 1.24091 1.33016 1.83567 1.24208 0.91979 0.81896 0.72445 1.90689 1.66556 1.36270 1.44383 1.22186 0.83590 0.92277 0.93355 1.86598 1.76142 1.17757 1.52719 1.22702 0.96591 0.92154 1.02827 1.22025 0.97656 0.94238 0.88366 1.47485 1.13456 1.45776 1.31216 1.15519 0.79187 0.81936 0.81784 1.91040 1.80132 1.37331 1.30814 1.42551 1.10192 1.40216 1.38305 1.17783 0.83764 0.93456 0.89789 1.20966 0.93148 1.13422 1.06958 1.17531 0.92467 0.88941 0.88740 1.20525 0.91789 1.11303 1.30817 0.90095 1.27148 1.01827 0.96832 0.92199 1.70462 1.34176 1.05638 1.28521 0.83655 0.74464 0.75414 0.77782 1.19739 1.19942 1.19676 1.21691 0.98453 1.07991 1.03055 1.21507 0.88558 0.96297 0.95715 1.67254 1.32959 1.20695 1.07802 1.22435 0.84759 1.00376 0.93289 0.91664 0.87698 0.91576 0.75781 0.88079 0.87391 0.90720 0.90620 0.76204 0.88159 0.88523 0.87229 0.85939 0.88604 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.00 10.21 -43.71 -0.45 -3.44 16 3 C 0.45 4.48 6.98 36.01 0.25 4.73 16 4 O -0.49 -5.79 15.49 -18.75 -0.29 -6.08 16 5 C 0.13 1.25 1.26 -89.62 -0.11 1.14 16 6 O -0.53 -4.99 13.11 -46.06 -0.60 -5.60 16 7 C -0.11 -0.92 5.98 -24.89 -0.15 -1.06 16 8 C 0.10 1.01 6.16 -3.06 -0.02 1.00 16 9 N -0.64 -8.92 3.33 -176.24 -0.59 -9.51 16 10 C 0.71 13.73 8.45 -86.91 -0.73 13.00 16 11 O -0.52 -12.35 14.86 5.30 0.08 -12.27 16 12 N -0.67 -12.77 5.34 -15.86 -0.08 -12.86 16 13 C 0.38 9.05 7.42 -154.67 -1.15 7.90 16 14 C -0.32 -7.73 9.74 -38.45 -0.37 -8.11 16 15 C 0.13 3.43 5.39 -106.55 -0.57 2.86 16 16 C -0.52 -13.20 8.96 -37.65 -0.34 -13.54 16 17 H 0.08 2.00 8.04 -52.49 -0.42 1.58 16 18 C 0.05 1.13 4.76 -17.35 -0.08 1.05 16 19 N -0.77 -19.54 12.39 55.55 0.69 -18.86 16 20 Si 1.06 20.55 30.05 -169.99 -5.11 15.44 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.29 -7.41 8.24 -39.07 -0.32 -7.73 16 25 C 0.13 3.25 11.10 -18.05 -0.20 3.05 16 26 N -0.57 -14.69 7.86 -12.76 -0.10 -14.79 16 27 C 0.12 1.36 6.09 -2.53 -0.02 1.34 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.39 2.57 8.86 45.56 0.40 2.97 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.90 7.21 -51.93 -0.37 0.53 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 6.15 7.70 -40.82 -0.31 5.84 16 37 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 38 H 0.30 7.96 7.18 -40.82 -0.29 7.66 16 39 H 0.11 2.82 6.59 -52.48 -0.35 2.48 16 40 H 0.12 2.74 8.06 -52.49 -0.42 2.32 16 41 H 0.10 1.16 8.04 -51.93 -0.42 0.74 16 42 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -34.57 361.63 -8.11 -42.68 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -4.36 Total: 12.94 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.75 Total: 6.89 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.08 Total: -56.01 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.26 Total: -27.39 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.11 Total: 15.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.57 -8.11 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414482683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.745 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds