Wall clock time and date at job start Tue Mar 31 2020 19:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99417 * 2 1 4 4 O 1.20825 * 120.00495 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99836 * 179.97438 * 3 2 1 6 6 F 1.39901 * 110.88526 * 313.87918 * 5 3 2 7 7 C 1.55166 * 111.03482 * 77.78328 * 5 3 2 8 8 C 1.54337 * 103.01560 * 153.39681 * 7 5 3 9 9 N 1.47014 * 107.26735 * 338.13849 * 8 7 5 10 10 C 1.34778 * 125.64825 * 178.84859 * 9 8 7 11 11 O 1.21285 * 120.00226 * 179.68998 * 10 9 8 12 12 C 1.50705 * 119.99867 * 359.69720 * 10 9 8 13 13 H 1.08995 * 109.47142 * 59.99399 * 12 10 9 14 14 C 1.50703 * 109.46575 * 299.99468 * 12 10 9 15 15 H 1.07994 * 120.00519 * 335.15992 * 14 12 10 16 16 C 1.37879 * 119.99282 * 155.16170 * 14 12 10 17 17 N 1.31516 * 120.00303 * 355.26325 * 16 14 12 18 18 Si 1.86800 * 119.99742 * 175.26589 * 16 14 12 19 19 H 1.48502 * 109.46898 * 59.99734 * 18 16 14 20 20 H 1.48498 * 109.47287 * 300.00054 * 18 16 14 21 21 H 1.48494 * 109.47318 * 179.97438 * 18 16 14 22 22 C 1.50700 * 109.46971 * 179.97438 * 12 10 9 23 23 C 1.38235 * 119.99807 * 66.39916 * 22 12 10 24 24 C 1.38242 * 119.99743 * 179.78702 * 23 22 12 25 25 C 1.38238 * 119.99831 * 0.44019 * 24 23 22 26 26 C 1.38234 * 119.99907 * 359.81507 * 25 24 23 27 27 C 1.38226 * 120.00340 * 359.97438 * 26 25 24 28 28 C 1.47423 * 108.70723 * 358.58574 * 9 8 7 29 29 H 1.08996 * 109.47248 * 300.00143 * 1 2 3 30 30 H 1.09000 * 109.47264 * 60.00279 * 1 2 3 31 31 H 1.09001 * 109.46712 * 180.02562 * 1 2 3 32 32 H 1.09001 * 110.71423 * 271.95065 * 7 5 3 33 33 H 1.08996 * 110.72107 * 35.05160 * 7 5 3 34 34 H 1.08996 * 109.98565 * 218.65941 * 8 7 5 35 35 H 1.09001 * 109.77589 * 97.49756 * 8 7 5 36 36 H 0.97001 * 120.00009 * 5.81371 * 17 16 14 37 37 H 1.07997 * 120.00256 * 359.97438 * 23 22 12 38 38 H 1.08006 * 120.00011 * 180.27782 * 24 23 22 39 39 H 1.08001 * 119.99754 * 179.83680 * 25 24 23 40 40 H 1.08002 * 119.99927 * 179.97438 * 26 25 24 41 41 H 1.07995 * 120.00471 * 179.97438 * 27 26 25 42 42 H 1.09007 * 110.37048 * 143.18983 * 28 9 8 43 43 H 1.08993 * 110.37239 * 265.40866 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 9 4.1115 0.3966 0.9431 7 6 4.1391 0.9979 -1.4146 8 6 5.4807 1.7609 -1.4021 9 7 5.3870 2.7913 -0.3577 10 6 6.3633 3.6559 -0.0175 11 8 6.1726 4.4713 0.8599 12 6 7.6919 3.6095 -0.7273 13 1 7.5415 3.7878 -1.7920 14 6 8.3203 2.2542 -0.5287 15 1 8.0552 1.6567 0.3309 16 6 9.2338 1.7772 -1.4447 17 7 9.4873 2.4620 -2.5385 18 14 10.1114 0.1581 -1.1321 19 1 9.1110 -0.9338 -1.0210 20 1 10.8855 0.2506 0.1318 21 1 11.0348 -0.1301 -2.2587 22 6 8.5998 4.6721 -0.1638 23 6 9.0431 4.5809 1.1424 24 6 9.8795 5.5534 1.6579 25 6 10.2652 6.6218 0.8701 26 6 9.8176 6.7158 -0.4344 27 6 8.9848 5.7411 -0.9512 28 6 4.0461 2.7265 0.2515 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.3014 -0.0698 -1.5626 33 1 3.4771 1.3963 -2.1834 34 1 5.6517 2.2296 -2.3712 35 1 6.2942 1.0728 -1.1722 36 1 9.0966 3.3413 -2.6617 37 1 8.7386 3.7483 1.7591 38 1 10.2296 5.4797 2.6770 39 1 10.9165 7.3830 1.2737 40 1 10.1185 7.5507 -1.0497 41 1 8.6347 5.8147 -1.9702 42 1 4.1053 2.9267 1.3214 43 1 3.3756 3.4380 -0.2303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417665830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:08 Heat of formation + Delta-G solvation = -135.434919 kcal Electronic energy + Delta-G solvation = -29612.287995 eV Core-core repulsion = 25344.208306 eV Total energy + Delta-G solvation = -4268.079689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -47.97759 -40.80143 -39.54185 -38.18042 -37.04684 -36.29491 -34.06570 -31.47812 -30.88471 -30.05692 -29.27109 -28.27280 -27.07844 -24.53194 -23.52414 -22.49963 -21.66168 -20.94632 -20.42108 -19.08327 -18.30549 -17.55784 -17.34565 -16.73458 -16.16028 -15.94331 -15.34266 -15.21972 -15.06232 -14.83828 -14.40210 -14.14770 -13.89404 -13.69120 -13.49551 -13.31123 -12.93518 -12.80088 -12.54278 -12.49469 -12.40292 -12.18768 -12.03480 -11.87247 -11.57390 -11.38201 -11.15048 -11.14541 -10.93569 -10.85108 -10.54760 -10.33942 -10.23378 -10.16356 -9.06712 -8.96066 -8.57393 -8.17120 -8.05504 -7.71273 -6.59581 -4.35342 1.67205 2.10747 2.25421 2.30070 3.31938 3.35979 3.46498 3.51482 3.53804 3.84598 4.07961 4.17406 4.35678 4.60638 4.71047 4.78521 4.87222 5.02860 5.13770 5.19323 5.24740 5.51847 5.59981 5.63589 5.68079 5.76748 5.79974 5.92132 5.97985 6.03755 6.06968 6.35811 6.36564 6.42586 6.59042 6.74535 6.85373 6.94195 7.25720 7.26324 7.32156 7.53965 7.78274 7.88917 8.04733 8.15948 8.56392 8.94500 9.34739 10.77927 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.003925 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.194559 B = 7132.335173 C = 8459.017740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.346 6.346 3 C 0.462 3.538 4 O -0.484 6.484 5 C 0.118 3.882 6 F -0.168 7.168 7 C -0.145 4.145 8 C 0.110 3.890 9 N -0.614 5.614 10 C 0.552 3.448 11 O -0.556 6.556 12 C 0.050 3.950 13 H 0.067 0.933 14 C -0.589 4.589 15 H 0.059 0.941 16 C 0.035 3.965 17 N -0.893 5.893 18 Si 1.064 2.936 19 H -0.284 1.284 20 H -0.285 1.285 21 H -0.281 1.281 22 C -0.023 4.023 23 C -0.078 4.078 24 C -0.132 4.132 25 C -0.145 4.145 26 C -0.129 4.129 27 C -0.126 4.126 28 C 0.104 3.896 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.272 0.728 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 -3.861 0.953 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.261 6.261 3 C 0.302 3.698 4 O -0.370 6.370 5 C 0.097 3.903 6 F -0.148 7.148 7 C -0.183 4.183 8 C -0.013 4.013 9 N -0.349 5.349 10 C 0.345 3.655 11 O -0.434 6.434 12 C 0.029 3.971 13 H 0.084 0.916 14 C -0.627 4.627 15 H 0.077 0.923 16 C -0.172 4.172 17 N -0.526 5.526 18 Si 0.891 3.109 19 H -0.211 1.211 20 H -0.211 1.211 21 H -0.206 1.206 22 C -0.024 4.024 23 C -0.096 4.096 24 C -0.151 4.151 25 C -0.163 4.163 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.020 4.020 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.012 -4.167 0.775 11.800 hybrid contribution -1.255 0.984 0.786 1.778 sum -12.267 -3.183 1.561 12.769 Atomic orbital electron populations 1.23374 0.75755 1.04119 1.02823 1.86575 1.23823 1.32401 1.83324 1.23607 0.91097 0.82105 0.72953 1.90713 1.66177 1.36156 1.43999 1.21743 0.85260 0.91916 0.91386 1.92980 1.86203 1.69956 1.65683 1.23407 0.98290 1.04106 0.92518 1.22126 0.96266 0.90898 0.92026 1.48254 1.12179 1.36246 1.38259 1.21174 0.84571 0.77393 0.82398 1.90619 1.81710 1.38103 1.32961 1.18125 0.86962 0.95849 0.96209 0.91567 1.21510 1.28114 1.00002 1.13045 0.92318 1.25802 0.94833 1.04392 0.92177 1.70810 1.43559 1.13515 1.24751 0.83593 0.76686 0.74355 0.76231 1.21057 1.21135 1.20607 1.20081 0.96154 0.92762 0.93360 1.20815 0.95854 0.97557 0.95355 1.20998 0.99455 0.95455 0.99146 1.20837 1.01956 0.98719 0.94755 1.20885 0.99275 0.98940 0.95608 1.20961 0.99572 0.94492 0.99398 1.22429 0.86522 0.91267 1.01802 0.91604 0.91550 0.87669 0.87417 0.88769 0.90571 0.87600 0.91604 0.86898 0.87341 0.87470 0.87355 0.87292 0.88911 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.97 10.55 -39.26 -0.41 -4.39 16 3 C 0.46 6.13 7.04 36.01 0.25 6.38 16 4 O -0.48 -7.15 15.44 -18.75 -0.29 -7.44 16 5 C 0.12 1.67 1.59 -89.61 -0.14 1.53 16 6 F -0.17 -2.66 17.00 2.25 0.04 -2.62 16 7 C -0.15 -1.81 6.22 -24.88 -0.15 -1.97 16 8 C 0.11 1.79 6.09 -3.06 -0.02 1.77 16 9 N -0.61 -11.62 3.32 -170.52 -0.57 -12.19 16 10 C 0.55 12.41 7.10 -10.98 -0.08 12.33 16 11 O -0.56 -13.74 15.69 5.55 0.09 -13.66 16 12 C 0.05 1.15 1.55 -94.07 -0.15 1.01 16 13 H 0.07 1.58 6.43 -51.93 -0.33 1.24 16 14 C -0.59 -14.32 5.42 -34.44 -0.19 -14.51 16 15 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 16 C 0.04 0.88 5.45 -17.82 -0.10 0.78 16 17 N -0.89 -23.66 13.62 55.43 0.76 -22.91 16 18 Si 1.06 22.81 29.91 -169.99 -5.08 17.73 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.02 -0.52 4.30 -104.62 -0.45 -0.97 16 23 C -0.08 -1.76 8.33 -39.58 -0.33 -2.09 16 24 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 25 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 26 C -0.13 -2.47 10.05 -39.59 -0.40 -2.86 16 27 C -0.13 -2.70 9.67 -39.59 -0.38 -3.08 16 28 C 0.10 1.71 5.93 -2.53 -0.01 1.69 16 29 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 1.95 6.58 -51.93 -0.34 1.60 16 36 H 0.27 7.18 6.67 -40.82 -0.27 6.91 16 37 H 0.11 2.62 7.88 -52.49 -0.41 2.20 16 38 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.11 2.19 7.96 -52.49 -0.42 1.78 16 42 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 43 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -30.66 367.76 -7.38 -38.04 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.58 Total: 6.66 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.87 Total: -4.77 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.19 Total: -35.10 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.62 Total: -25.48 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.08 Total: 17.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.66 -7.38 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417665830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.392 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds