Wall clock time and date at job start Tue Mar 31 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99417 * 2 1 4 4 O 1.20825 * 120.00495 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99836 * 179.97438 * 3 2 1 6 6 F 1.39901 * 110.88526 * 313.87918 * 5 3 2 7 7 C 1.55166 * 111.03482 * 77.78328 * 5 3 2 8 8 C 1.54337 * 103.01560 * 153.39681 * 7 5 3 9 9 N 1.47014 * 107.26735 * 338.13849 * 8 7 5 10 10 C 1.34778 * 125.64825 * 178.84859 * 9 8 7 11 11 O 1.21285 * 120.00226 * 179.68998 * 10 9 8 12 12 C 1.50705 * 119.99867 * 359.69720 * 10 9 8 13 13 H 1.08995 * 109.47142 * 59.99399 * 12 10 9 14 14 C 1.50703 * 109.46575 * 299.99468 * 12 10 9 15 15 H 1.07994 * 120.00519 * 335.15992 * 14 12 10 16 16 C 1.37879 * 119.99282 * 155.16170 * 14 12 10 17 17 N 1.31516 * 120.00303 * 355.26325 * 16 14 12 18 18 Si 1.86800 * 119.99742 * 175.26589 * 16 14 12 19 19 H 1.48502 * 109.46898 * 59.99734 * 18 16 14 20 20 H 1.48498 * 109.47287 * 300.00054 * 18 16 14 21 21 H 1.48494 * 109.47318 * 179.97438 * 18 16 14 22 22 C 1.50700 * 109.46971 * 179.97438 * 12 10 9 23 23 C 1.38235 * 119.99807 * 66.39916 * 22 12 10 24 24 C 1.38242 * 119.99743 * 179.78702 * 23 22 12 25 25 C 1.38238 * 119.99831 * 0.44019 * 24 23 22 26 26 C 1.38234 * 119.99907 * 359.81507 * 25 24 23 27 27 C 1.38226 * 120.00340 * 359.97438 * 26 25 24 28 28 C 1.47423 * 108.70723 * 358.58574 * 9 8 7 29 29 H 1.08996 * 109.47248 * 300.00143 * 1 2 3 30 30 H 1.09000 * 109.47264 * 60.00279 * 1 2 3 31 31 H 1.09001 * 109.46712 * 180.02562 * 1 2 3 32 32 H 1.09001 * 110.71423 * 271.95065 * 7 5 3 33 33 H 1.08996 * 110.72107 * 35.05160 * 7 5 3 34 34 H 1.08996 * 109.98565 * 218.65941 * 8 7 5 35 35 H 1.09001 * 109.77589 * 97.49756 * 8 7 5 36 36 H 0.97001 * 120.00009 * 5.81371 * 17 16 14 37 37 H 1.07997 * 120.00256 * 359.97438 * 23 22 12 38 38 H 1.08006 * 120.00011 * 180.27782 * 24 23 22 39 39 H 1.08001 * 119.99754 * 179.83680 * 25 24 23 40 40 H 1.08002 * 119.99927 * 179.97438 * 26 25 24 41 41 H 1.07995 * 120.00471 * 179.97438 * 27 26 25 42 42 H 1.09007 * 110.37048 * 143.18983 * 28 9 8 43 43 H 1.08993 * 110.37239 * 265.40866 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 9 4.1115 0.3966 0.9431 7 6 4.1391 0.9979 -1.4146 8 6 5.4807 1.7609 -1.4021 9 7 5.3870 2.7913 -0.3577 10 6 6.3633 3.6559 -0.0175 11 8 6.1726 4.4713 0.8599 12 6 7.6919 3.6095 -0.7273 13 1 7.5415 3.7878 -1.7920 14 6 8.3203 2.2542 -0.5287 15 1 8.0552 1.6567 0.3309 16 6 9.2338 1.7772 -1.4447 17 7 9.4873 2.4620 -2.5385 18 14 10.1114 0.1581 -1.1321 19 1 9.1110 -0.9338 -1.0210 20 1 10.8855 0.2506 0.1318 21 1 11.0348 -0.1301 -2.2587 22 6 8.5998 4.6721 -0.1638 23 6 9.0431 4.5809 1.1424 24 6 9.8795 5.5534 1.6579 25 6 10.2652 6.6218 0.8701 26 6 9.8176 6.7158 -0.4344 27 6 8.9848 5.7411 -0.9512 28 6 4.0461 2.7265 0.2515 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.3014 -0.0698 -1.5626 33 1 3.4771 1.3963 -2.1834 34 1 5.6517 2.2296 -2.3712 35 1 6.2942 1.0728 -1.1722 36 1 9.0966 3.3413 -2.6617 37 1 8.7386 3.7483 1.7591 38 1 10.2296 5.4797 2.6770 39 1 10.9165 7.3830 1.2737 40 1 10.1185 7.5507 -1.0497 41 1 8.6347 5.8147 -1.9702 42 1 4.1053 2.9267 1.3214 43 1 3.3756 3.4380 -0.2303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417665830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:07 Heat of formation + Delta-G solvation = -151.837289 kcal Electronic energy + Delta-G solvation = -29612.999255 eV Core-core repulsion = 25344.208306 eV Total energy + Delta-G solvation = -4268.790949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.20243 -41.85767 -41.15096 -39.70001 -38.29470 -37.58505 -35.90884 -32.95264 -32.54627 -31.65230 -30.54881 -29.35304 -28.46118 -26.10311 -25.10489 -23.75101 -23.27100 -22.43638 -21.61504 -20.64393 -19.49219 -19.24392 -18.43824 -17.96998 -17.57955 -17.42078 -16.84867 -16.65812 -16.30993 -16.17133 -15.83417 -15.64283 -15.44367 -15.28203 -14.80098 -14.40113 -14.36253 -14.10386 -14.04852 -14.03172 -13.80302 -13.70501 -13.30474 -13.19638 -12.96603 -12.84915 -12.57594 -12.46764 -12.32058 -11.97493 -11.96064 -11.92599 -11.80613 -11.63148 -10.91711 -10.76952 -10.48516 -9.73535 -9.66428 -9.36644 -8.59044 -6.33759 0.61916 0.63869 0.68292 1.11755 1.57849 1.63357 1.71958 1.83165 2.05213 2.57116 2.63632 2.89243 3.07539 3.11840 3.22699 3.53135 3.86059 3.99823 4.08269 4.14200 4.20367 4.22287 4.29564 4.31501 4.37241 4.38778 4.51441 4.61110 4.63347 4.67949 4.76393 4.81933 4.90312 4.98874 5.00872 5.22715 5.30487 5.33647 5.67838 5.71154 5.72904 6.04385 6.14791 6.27543 6.29198 6.38350 6.58567 7.19881 7.41189 8.79033 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.003925 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.194559 B = 7132.335173 C = 8459.017740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.347 6.347 3 C 0.474 3.526 4 O -0.502 6.502 5 C 0.119 3.881 6 F -0.179 7.179 7 C -0.129 4.129 8 C 0.105 3.895 9 N -0.614 5.614 10 C 0.546 3.454 11 O -0.587 6.587 12 C 0.053 3.947 13 H 0.053 0.947 14 C -0.579 4.579 15 H 0.043 0.957 16 C 0.001 3.999 17 N -0.916 5.916 18 Si 1.100 2.900 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.051 4.051 23 C -0.107 4.107 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.127 4.127 27 C -0.148 4.148 28 C 0.100 3.900 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.263 0.737 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -4.346 0.823 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.262 6.262 3 C 0.314 3.686 4 O -0.390 6.390 5 C 0.099 3.901 6 F -0.159 7.159 7 C -0.167 4.167 8 C -0.017 4.017 9 N -0.347 5.347 10 C 0.338 3.662 11 O -0.468 6.468 12 C 0.032 3.968 13 H 0.071 0.929 14 C -0.617 4.617 15 H 0.062 0.938 16 C -0.201 4.201 17 N -0.551 5.551 18 Si 0.923 3.077 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.052 4.052 23 C -0.125 4.125 24 C -0.152 4.152 25 C -0.157 4.157 26 C -0.144 4.144 27 C -0.166 4.166 28 C -0.023 4.023 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.569 -4.693 0.637 12.501 hybrid contribution -1.166 1.180 0.878 1.877 sum -12.735 -3.513 1.515 13.297 Atomic orbital electron populations 1.23762 0.73377 1.06466 1.03230 1.86556 1.26024 1.30979 1.82662 1.23150 0.90299 0.82473 0.72662 1.90714 1.66352 1.36869 1.45066 1.21661 0.86524 0.89989 0.91956 1.92960 1.86549 1.70064 1.66315 1.23426 0.96068 1.05112 0.92066 1.22206 0.98216 0.90130 0.91162 1.48237 1.12471 1.35596 1.38437 1.21060 0.85146 0.77839 0.82164 1.90576 1.82368 1.39604 1.34225 1.18027 0.87661 0.95711 0.95449 0.92917 1.21470 1.27778 1.00352 1.12063 0.93833 1.26803 0.95141 1.06456 0.91726 1.70894 1.44809 1.13607 1.25834 0.83130 0.76341 0.72450 0.75806 1.18636 1.21035 1.20966 1.20172 0.97007 0.93799 0.94177 1.20834 0.97908 0.98491 0.95309 1.21363 0.98284 0.94879 1.00693 1.21325 1.01366 0.98783 0.94198 1.21327 0.97758 0.98924 0.96428 1.21165 1.00745 0.95091 0.99578 1.22511 0.85353 0.93635 1.00793 0.91608 0.90807 0.84403 0.84961 0.85908 0.90431 0.89784 0.92567 0.88948 0.84538 0.83220 0.83853 0.87147 0.90475 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.56 113.37 1.20 1.50 16 2 O -0.35 -7.14 10.55 -51.42 -0.54 -7.68 16 3 C 0.47 11.78 7.04 71.24 0.50 12.28 16 4 O -0.50 -14.17 15.44 21.97 0.34 -13.84 16 5 C 0.12 3.28 1.59 -10.14 -0.02 3.27 16 6 F -0.18 -5.57 17.00 44.97 0.76 -4.80 16 7 C -0.13 -3.00 6.22 31.79 0.20 -2.80 16 8 C 0.11 3.46 6.09 86.74 0.53 3.99 16 9 N -0.61 -24.00 3.32 -811.77 -2.70 -26.70 16 10 C 0.55 25.74 7.10 87.66 0.62 26.37 16 11 O -0.59 -30.45 15.69 -3.05 -0.05 -30.50 16 12 C 0.05 2.57 1.55 -13.03 -0.02 2.55 16 13 H 0.05 2.67 6.43 -2.39 -0.02 2.65 16 14 C -0.58 -29.23 5.42 25.60 0.14 -29.09 16 15 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 16 C 0.00 0.05 5.45 84.65 0.46 0.51 16 17 N -0.92 -49.72 13.62 21.45 0.29 -49.43 16 18 Si 1.10 46.21 29.91 68.60 2.05 48.27 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 C -0.05 -2.43 4.30 -19.86 -0.09 -2.52 16 23 C -0.11 -4.99 8.33 22.27 0.19 -4.81 16 24 C -0.13 -5.19 10.05 22.27 0.22 -4.96 16 25 C -0.14 -4.78 10.05 22.27 0.22 -4.56 16 26 C -0.13 -4.62 10.05 22.27 0.22 -4.39 16 27 C -0.15 -6.42 9.67 22.27 0.22 -6.20 16 28 C 0.10 3.36 5.93 86.86 0.51 3.88 16 29 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 31 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.12 2.20 8.03 -2.39 -0.02 2.18 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.08 3.16 6.58 -2.39 -0.02 3.14 16 36 H 0.26 14.41 6.67 -92.71 -0.62 13.80 16 37 H 0.09 4.54 7.88 -2.91 -0.02 4.51 16 38 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 41 H 0.11 4.60 7.96 -2.91 -0.02 4.58 16 42 H 0.08 2.81 8.04 -2.38 -0.02 2.79 16 43 H 0.10 3.30 7.27 -2.39 -0.02 3.28 16 Total: -1.00 -68.83 367.76 6.45 -62.38 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.18 Total: 27.29 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.11 Total: -5.00 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -2.40 Total: -76.12 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.25 Total: -52.01 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.76 Total: -4.80 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.05 Total: 48.27 kcal Total: -68.83 6.45 -62.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417665830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.457 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds