Wall clock time and date at job start Tue Mar 31 2020 18:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46507 * 2 1 4 4 C 1.35731 * 116.99706 * 179.97438 * 3 2 1 5 5 C 1.41840 * 126.78407 * 180.02562 * 4 3 2 6 6 C 1.36736 * 103.80457 * 179.97438 * 5 4 3 7 7 C 1.47392 * 126.88357 * 179.97438 * 6 5 4 8 8 O 1.21524 * 120.00413 * 0.02562 * 7 6 5 9 9 O 1.34730 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.36174 * 116.99714 * 180.02562 * 9 7 6 11 11 C 1.40189 * 126.07911 * 269.99430 * 10 9 7 12 12 C 1.50695 * 125.89403 * 359.97438 * 11 10 9 13 13 N 1.30862 * 108.21812 * 179.74132 * 11 10 9 14 14 N 1.40074 * 108.31116 * 0.41112 * 13 11 10 15 15 C 1.46491 * 126.01624 * 179.85313 * 14 13 11 16 16 C 1.50702 * 109.46957 * 269.68407 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.35239 * 107.96323 * 359.58578 * 14 13 11 25 25 C 1.50698 * 126.16684 * 180.28303 * 24 14 13 26 26 O 1.34679 * 106.22601 * 0.26536 * 6 5 4 27 27 N 1.20870 * 111.63148 * 359.51835 * 26 6 5 28 28 H 1.08993 * 109.47758 * 300.00013 * 1 2 3 29 29 H 1.08998 * 109.47058 * 60.00681 * 1 2 3 30 30 H 1.09002 * 109.47073 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47258 * 240.00160 * 2 1 3 32 32 H 1.08998 * 109.46315 * 119.99346 * 2 1 3 33 33 H 1.07995 * 128.09692 * 359.97438 * 5 4 3 34 34 H 1.09003 * 109.47144 * 89.99689 * 12 11 10 35 35 H 1.08997 * 109.47341 * 209.99778 * 12 11 10 36 36 H 1.09007 * 109.46644 * 329.99992 * 12 11 10 37 37 H 1.09004 * 109.47166 * 149.68673 * 15 14 13 38 38 H 1.08994 * 109.47507 * 29.68379 * 15 14 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.08991 * 109.47711 * 89.99685 * 25 24 14 41 41 H 1.09008 * 109.47285 * 210.00297 * 25 24 14 42 42 H 1.09005 * 109.46854 * 329.99582 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3518 1.5253 0.0005 5 6 4.0449 2.7628 0.0012 6 6 5.3629 2.3986 0.0021 7 6 6.5296 3.2993 0.0025 8 8 6.3675 4.5037 0.0025 9 8 7.7758 2.7873 0.0030 10 6 8.8087 3.6748 0.0039 11 6 9.4355 4.2132 -1.1286 12 6 9.0830 3.9093 -2.5618 13 7 10.3764 5.0290 -0.7264 14 7 10.3877 5.0314 0.6743 15 6 11.2908 5.8079 1.5272 16 6 12.5265 4.9966 1.8202 17 1 12.6290 4.0021 1.4117 18 6 13.5289 5.5263 2.6049 19 7 13.4042 6.7375 3.1020 20 14 15.0640 4.5236 2.9618 21 1 16.0834 4.7894 1.9151 22 1 15.6071 4.9058 4.2900 23 1 14.7220 3.0785 2.9640 24 6 9.4142 4.1950 1.1007 25 6 9.0643 3.8956 2.5356 26 8 5.3812 1.0519 -0.0040 27 7 4.2638 0.5911 0.0012 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.6290 3.7594 0.0009 34 1 8.3280 4.6153 -2.9078 35 1 9.9749 3.9983 -3.1821 36 1 8.6911 2.8946 -2.6323 37 1 10.7867 6.0528 2.4621 38 1 11.5731 6.7277 1.0149 39 1 14.1093 7.1100 3.6543 40 1 8.3102 4.6027 2.8809 41 1 8.6724 2.8812 2.6101 42 1 9.9575 3.9863 3.1538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433571494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:19 Heat of formation + Delta-G solvation = 27.207219 kcal Electronic energy + Delta-G solvation = -28089.768442 eV Core-core repulsion = 23848.661407 eV Total energy + Delta-G solvation = -4241.107035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.33035 -41.35442 -39.84750 -39.39952 -36.83588 -34.08446 -33.89608 -32.64531 -32.45358 -31.58395 -30.85924 -29.13144 -26.97244 -26.06395 -25.20733 -23.91741 -23.64294 -22.73459 -21.45535 -20.12071 -19.33901 -19.06277 -18.29878 -17.36810 -17.26685 -16.80484 -16.38967 -16.20551 -15.74169 -15.23903 -14.96162 -14.60894 -14.39369 -13.98945 -13.74519 -13.54949 -13.38721 -13.15550 -13.02014 -12.83614 -12.58870 -12.38043 -12.15125 -12.04621 -11.80286 -11.71891 -11.62725 -11.60690 -11.12734 -11.09905 -10.93678 -10.87123 -10.34865 -10.26842 -9.85753 -9.83019 -9.70138 -8.71480 -8.45182 -7.84628 -6.33648 -4.41980 0.31357 1.70537 1.84428 2.18636 2.46105 2.51004 2.81685 3.18351 3.19317 3.25008 3.30888 3.49835 3.75767 4.23944 4.29788 4.42816 4.46989 4.70018 4.76032 4.80100 5.00646 5.03916 5.12364 5.24833 5.27314 5.30417 5.48368 5.52419 5.70888 5.84927 5.87950 6.02069 6.04291 6.24311 6.32445 6.46371 6.54080 6.78905 6.90129 7.09682 7.53406 7.61626 7.73694 7.77067 7.89203 8.34306 8.64068 9.25083 10.74134 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002243 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.866427 B =12479.149357 C =12872.294043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.280 6.280 4 C 0.207 3.793 5 C -0.147 4.147 6 C -0.029 4.029 7 C 0.531 3.469 8 O -0.456 6.456 9 O -0.231 6.231 10 C -0.114 4.114 11 C 0.066 3.934 12 C -0.070 4.070 13 N -0.278 5.278 14 N -0.311 5.311 15 C 0.256 3.744 16 C -0.542 4.542 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.115 3.885 25 C -0.097 4.097 26 O 0.137 5.863 27 N -0.385 5.385 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.194 0.806 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.912 -11.321 -5.107 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.187 6.187 4 C 0.010 3.990 5 C -0.169 4.169 6 C -0.093 4.093 7 C 0.372 3.628 8 O -0.341 6.341 9 O -0.141 6.141 10 C -0.168 4.168 11 C -0.100 4.100 12 C -0.128 4.128 13 N -0.102 5.102 14 N -0.090 5.090 15 C 0.139 3.861 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.196 1.196 24 C -0.020 4.020 25 C -0.155 4.155 26 O 0.068 5.932 27 N -0.107 5.107 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.211 0.789 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.128 -11.008 -5.251 24.396 hybrid contribution 0.065 -0.299 0.542 0.622 sum -21.063 -11.307 -4.710 24.365 Atomic orbital electron populations 1.21802 0.92003 1.03325 1.03767 1.22880 0.96024 0.80319 1.02641 1.86228 1.12688 1.30505 1.89248 1.21735 0.86034 0.90187 1.01058 1.22172 0.89536 0.99642 1.05547 1.22723 0.93924 0.84356 1.08317 1.19907 0.83127 0.85479 0.74319 1.90955 1.85809 1.13903 1.43385 1.84852 1.11610 1.35469 1.82209 1.17594 0.96876 1.10022 0.92282 1.22287 0.95627 0.95982 0.96145 1.20108 1.02069 1.01751 0.88912 1.77423 1.21042 1.21261 0.90427 1.49244 1.24681 1.31091 1.03994 1.19848 0.87156 0.91264 0.87824 1.21288 1.01959 1.02174 1.32570 0.91530 1.24932 0.98622 0.95145 0.94975 1.69919 1.34371 1.14997 1.33367 0.86319 0.82154 0.80262 0.77773 1.20232 1.20833 1.19559 1.20930 0.91728 0.92987 0.96325 1.20497 1.03386 1.02278 0.89361 1.85081 1.22404 1.18085 1.67601 1.74056 0.90462 1.22128 1.24046 0.91258 0.91280 0.89846 0.91375 0.91362 0.78866 0.91018 0.90612 0.90808 0.92556 0.92346 0.92105 0.90503 0.90181 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.16 0.38 -0.32 16 2 C 0.06 0.40 6.38 37.16 0.24 0.64 16 3 O -0.28 -2.73 10.21 -18.90 -0.19 -2.92 16 4 C 0.21 2.26 8.00 -16.72 -0.13 2.13 16 5 C -0.15 -1.56 10.97 -38.75 -0.43 -1.98 16 6 C -0.03 -0.35 7.36 -36.40 -0.27 -0.62 16 7 C 0.53 7.91 7.91 34.46 0.27 8.19 16 8 O -0.46 -7.85 16.69 -19.29 -0.32 -8.17 16 9 O -0.23 -3.80 10.14 -26.40 -0.27 -4.07 16 10 C -0.11 -2.19 5.36 -39.77 -0.21 -2.40 16 11 C 0.07 1.28 7.23 -82.28 -0.59 0.68 16 12 C -0.07 -1.02 10.44 36.00 0.38 -0.64 16 13 N -0.28 -6.29 12.57 33.74 0.42 -5.86 16 14 N -0.31 -7.15 3.60 -58.17 -0.21 -7.36 16 15 C 0.26 6.37 5.83 -5.20 -0.03 6.34 16 16 C -0.54 -14.45 9.39 -34.44 -0.32 -14.78 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.42 13.29 55.43 0.74 -23.69 16 20 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.11 2.32 6.95 -82.02 -0.57 1.75 16 25 C -0.10 -1.61 9.87 36.00 0.36 -1.25 16 26 O 0.14 1.69 11.22 15.45 0.17 1.86 16 27 N -0.38 -4.57 11.50 30.48 0.35 -4.22 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.06 1.38 7.67 -51.93 -0.40 0.98 16 38 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.09 1.61 7.73 -51.93 -0.40 1.21 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -30.67 380.62 -5.04 -35.72 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.42 Total: -2.06 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.03 Total: -0.58 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.30 Total: -41.12 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.61 Total: -13.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.67 -5.04 -35.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433571494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.923 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds