Wall clock time and date at job start Tue Mar 31 2020 18:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99701 * 2 1 4 4 O 1.21506 * 120.00394 * 357.54852 * 3 2 1 5 5 C 1.48225 * 119.99759 * 177.55356 * 3 2 1 6 6 C 1.39610 * 119.65152 * 186.58258 * 5 3 2 7 7 C 1.38580 * 119.26348 * 179.74803 * 6 5 3 8 8 C 1.38535 * 118.56838 * 0.52104 * 7 6 5 9 9 C 1.39690 * 119.23778 * 359.74807 * 8 7 6 10 10 C 1.48059 * 119.65964 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00258 * 14.32422 * 10 9 8 12 12 N 1.34779 * 119.99543 * 194.32869 * 10 9 8 13 13 C 1.36785 * 119.99899 * 174.83732 * 12 10 9 14 14 H 1.07999 * 119.99764 * 228.50161 * 13 12 10 15 15 C 1.39114 * 119.99691 * 48.50294 * 13 12 10 16 16 N 1.31323 * 119.99764 * 33.50035 * 15 13 12 17 17 Si 1.86796 * 119.99843 * 213.49919 * 15 13 12 18 18 H 1.48497 * 109.47340 * 4.99682 * 17 15 13 19 19 H 1.48491 * 109.47307 * 125.00618 * 17 15 13 20 20 H 1.48507 * 109.46841 * 245.00365 * 17 15 13 21 21 C 1.46504 * 120.00300 * 354.83997 * 12 10 9 22 22 C 1.52999 * 109.46878 * 81.21395 * 21 12 10 23 23 C 1.50705 * 109.46641 * 172.56901 * 22 21 12 24 24 O 1.20819 * 120.00493 * 353.66708 * 23 22 21 25 25 O 1.34234 * 119.99361 * 173.66242 * 23 22 21 26 26 C 1.45204 * 116.99614 * 180.02562 * 25 23 22 27 27 N 1.32365 * 119.65026 * 6.86254 * 5 3 2 28 28 H 1.08994 * 109.47565 * 300.00500 * 1 2 3 29 29 H 1.09004 * 109.46448 * 60.00309 * 1 2 3 30 30 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99962 * 179.97438 * 2 1 3 32 32 H 1.07999 * 120.36794 * 0.02848 * 6 5 3 33 33 H 1.07997 * 120.71839 * 180.27038 * 7 6 5 34 34 H 1.07993 * 120.38371 * 179.76952 * 8 7 6 35 35 H 0.97003 * 119.99432 * 184.96168 * 16 15 13 36 36 H 1.08994 * 109.47103 * 201.21268 * 21 12 10 37 37 H 1.09004 * 109.46825 * 321.21568 * 21 12 10 38 38 H 1.09004 * 109.47010 * 292.56298 * 22 21 12 39 39 H 1.08995 * 109.47720 * 52.57196 * 22 21 12 40 40 H 1.08998 * 109.47512 * 180.02562 * 26 25 23 41 41 H 1.09006 * 109.47198 * 300.00460 * 26 25 23 42 42 H 1.09001 * 109.47277 * 59.99724 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5322 2.2190 -0.0450 5 6 3.6201 1.1678 0.0548 6 6 4.3057 2.3761 0.1936 7 6 5.6903 2.3668 0.2492 8 6 6.3490 1.1519 0.1536 9 6 5.6021 -0.0198 0.0102 10 6 6.2965 -1.3235 -0.0923 11 8 7.4719 -1.4111 0.2048 12 7 5.6253 -2.4130 -0.5152 13 6 6.2899 -3.5924 -0.7111 14 1 6.1472 -4.1470 -1.6268 15 6 7.1495 -4.0775 0.2693 16 7 6.8848 -3.8654 1.5380 17 14 8.6801 -5.0304 -0.2190 18 1 8.8138 -5.0282 -1.6980 19 1 9.8755 -4.3913 0.3871 20 1 8.5675 -6.4297 0.2656 21 6 4.1839 -2.3342 -0.7652 22 6 3.9385 -1.7260 -2.1475 23 6 2.4713 -1.8119 -2.4808 24 8 1.7192 -2.4090 -1.7477 25 8 2.0002 -1.2247 -3.5921 26 6 0.5764 -1.3477 -3.8497 27 7 4.2791 0.0233 -0.0339 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9501 -0.8401 0.0004 32 1 3.7627 3.3072 0.2614 33 1 6.2441 3.2872 0.3606 34 1 7.4276 1.1110 0.1897 35 1 7.5195 -4.1401 2.2182 36 1 3.7533 -3.3348 -0.7269 37 1 3.7169 -1.7083 -0.0047 38 1 4.2501 -0.6814 -2.1453 39 1 4.5132 -2.2750 -2.8933 40 1 0.3287 -0.8301 -4.7763 41 1 0.3134 -2.4016 -3.9411 42 1 0.0184 -0.9043 -3.0250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438602442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:43 Heat of formation + Delta-G solvation = -86.698949 kcal Electronic energy + Delta-G solvation = -30597.564905 eV Core-core repulsion = 26351.518527 eV Total energy + Delta-G solvation = -4246.046377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76014 -40.14543 -39.09471 -37.80893 -36.42660 -34.90984 -34.53811 -32.80292 -32.16956 -31.16680 -30.36584 -27.60342 -27.12056 -25.62118 -24.31883 -23.76975 -22.87470 -20.85868 -20.46178 -19.91023 -17.95425 -17.58190 -17.44576 -16.45532 -16.42346 -15.98752 -15.93549 -15.48873 -15.34559 -15.18425 -14.83524 -14.34788 -14.10483 -13.86918 -13.68416 -13.44388 -13.25776 -13.01798 -12.71993 -12.62348 -12.26069 -12.20840 -12.11598 -11.87261 -11.56630 -11.54207 -10.97935 -10.86314 -10.74286 -10.70684 -10.32355 -10.28901 -10.11169 -9.77882 -9.18973 -9.14181 -8.85777 -8.76974 -8.42456 -7.43937 -6.38602 -4.05360 0.76240 1.17396 2.41558 2.75517 2.87500 3.21146 3.25669 3.39000 3.40769 3.67868 4.05583 4.27355 4.51745 4.60094 4.86692 4.96913 5.08342 5.11668 5.14409 5.15002 5.19638 5.27677 5.34928 5.46416 5.49083 5.51903 5.64382 5.70096 5.77284 5.86401 6.02181 6.13604 6.26576 6.40351 6.50265 6.53001 6.65098 6.95729 7.44754 7.49005 7.84678 7.92679 8.08717 8.22563 8.78977 8.89597 9.37215 9.97123 10.65618 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.005147 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.808495 B = 5438.852684 C = 6946.963062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.715 5.715 3 C 0.573 3.427 4 O -0.541 6.541 5 C 0.063 3.937 6 C -0.114 4.114 7 C -0.087 4.087 8 C -0.103 4.103 9 C 0.112 3.888 10 C 0.511 3.489 11 O -0.542 6.542 12 N -0.412 5.412 13 C -0.365 4.365 14 H 0.087 0.913 15 C 0.094 3.906 16 N -0.812 5.812 17 Si 0.902 3.098 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.286 1.286 21 C 0.106 3.894 22 C -0.126 4.126 23 C 0.470 3.530 24 O -0.509 6.509 25 O -0.363 6.363 26 C 0.035 3.965 27 N -0.438 5.438 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.416 0.584 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.269 0.731 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 8.392 -5.974 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.369 5.369 3 C 0.358 3.642 4 O -0.418 6.418 5 C -0.077 4.077 6 C -0.135 4.135 7 C -0.112 4.112 8 C -0.124 4.124 9 C -0.029 4.029 10 C 0.298 3.702 11 O -0.421 6.421 12 N -0.130 5.130 13 C -0.490 4.490 14 H 0.105 0.895 15 C -0.120 4.120 16 N -0.443 5.443 17 Si 0.727 3.273 18 H -0.191 1.191 19 H -0.203 1.203 20 H -0.212 1.212 21 C -0.018 4.018 22 C -0.165 4.165 23 C 0.314 3.686 24 O -0.396 6.396 25 O -0.280 6.280 26 C -0.058 4.058 27 N -0.154 5.154 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.254 0.746 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.171 7.994 -5.525 14.067 hybrid contribution 1.113 -0.022 -0.009 1.113 sum -9.059 7.972 -5.534 13.276 Atomic orbital electron populations 1.21555 0.79437 1.02625 1.01833 1.45870 1.07908 1.09448 1.73625 1.17970 0.85916 0.83970 0.76316 1.90740 1.69040 1.31378 1.50600 1.21191 0.94040 0.90338 1.02092 1.22074 0.94705 0.98867 0.97877 1.21565 0.93842 0.98469 0.97349 1.22329 1.02593 0.91712 0.95763 1.22054 0.88338 0.96495 0.96031 1.17638 0.86167 0.81650 0.84787 1.90633 1.15756 1.83823 1.51927 1.43079 1.04565 1.07834 1.57535 1.19000 1.27811 0.99938 1.02294 0.89543 1.25257 0.98492 0.94580 0.93701 1.70043 1.32883 1.41022 1.00347 0.86373 0.83199 0.78171 0.79555 1.19123 1.20331 1.21234 1.21953 0.85125 1.01566 0.93185 1.21977 0.87624 1.04817 1.02101 1.23987 0.92275 0.74484 0.77873 1.90598 1.59557 1.40011 1.49478 1.86551 1.27214 1.70620 1.43598 1.23198 0.78278 1.02480 1.01892 1.68141 1.09789 1.26543 1.10936 0.92187 0.92463 0.90200 0.74557 0.83805 0.83922 0.83239 0.92053 0.90250 0.88099 0.88695 0.87695 0.88612 0.92004 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 10.71 59.85 0.64 1.69 16 2 N -0.72 -10.53 5.61 -67.92 -0.38 -10.92 16 3 C 0.57 9.27 7.80 -12.16 -0.09 9.18 16 4 O -0.54 -9.50 16.34 5.36 0.09 -9.41 16 5 C 0.06 1.02 6.75 -83.02 -0.56 0.46 16 6 C -0.11 -1.58 9.63 -38.94 -0.38 -1.96 16 7 C -0.09 -1.12 10.16 -39.35 -0.40 -1.52 16 8 C -0.10 -1.67 9.63 -38.93 -0.37 -2.04 16 9 C 0.11 2.17 6.12 -83.03 -0.51 1.66 16 10 C 0.51 12.26 7.15 -12.23 -0.09 12.17 16 11 O -0.54 -14.74 14.87 5.32 0.08 -14.67 16 12 N -0.41 -9.81 2.49 -115.81 -0.29 -10.10 16 13 C -0.36 -9.48 8.95 -15.02 -0.13 -9.61 16 14 H 0.09 2.15 8.02 -52.49 -0.42 1.73 16 15 C 0.09 2.52 3.89 -17.44 -0.07 2.45 16 16 N -0.81 -22.87 13.16 55.50 0.73 -22.14 16 17 Si 0.90 20.93 29.67 -169.99 -5.04 15.88 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 21 C 0.11 2.11 4.43 -4.04 -0.02 2.09 16 22 C -0.13 -2.11 5.57 -27.88 -0.16 -2.27 16 23 C 0.47 7.30 7.50 36.01 0.27 7.57 16 24 O -0.51 -8.31 14.22 -18.74 -0.27 -8.57 16 25 O -0.36 -5.06 10.57 -39.27 -0.41 -5.48 16 26 C 0.04 0.37 10.56 101.05 1.07 1.43 16 27 N -0.44 -7.78 3.94 -6.39 -0.03 -7.81 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.42 6.52 4.95 -40.82 -0.20 6.31 16 32 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.15 2.36 7.71 -52.49 -0.40 1.95 16 35 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.08 1.64 7.60 -51.93 -0.39 1.25 16 37 H 0.10 1.99 3.85 -51.93 -0.20 1.79 16 38 H 0.09 1.60 6.28 -51.93 -0.33 1.27 16 39 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 42 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -32.37 360.41 -5.76 -38.12 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.87 Total: 8.35 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: -0.80 Total: 21.30 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.04 Total: -50.97 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.51 Total: -38.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.04 Total: 15.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.37 -5.76 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438602442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.578 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds